Best Alignments for T0379

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jud/T0379-1jud-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jud/T0379-1jud-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5500e-228.57e-86 1qq5A c.108.1.1
2fdrA/T0379-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fdrA/T0379-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4817e-226.52e-94
1te2A/T0379-1te2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1te2A/T0379-1te2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1577e-218.46e-94 c.108.1.6
2ah5A/T0379-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ah5A/T0379-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2308e-211.19e-88
2gfhA/T0379-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfhA/T0379-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8127e-212.47e-96
1x42A/T0379-1x42A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x42A/T0379-1x42A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4944e-203.69e-90
1swvA/T0379-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1swvA/T0379-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6624e-198.61e-72
1fezA/T0379-1fezA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fezA/T0379-1fezA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7764e-198.44e-77 1fezA c.108.1.3
2go7A/T0379-2go7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2go7A/T0379-2go7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1095e-186.66e-87
2fi1A/T0379-2fi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fi1A/T0379-2fi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3210e-181.06e-80

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001