Best Alignments for T0379

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2b0cA/T0379-2b0cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b0cA/T0379-2b0cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8043e+006.09e-07
1cb6A/T0379-1cb6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cb6A/T0379-1cb6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8700e+004.42e+01 1cb6A c.94.1.2
c.94.1.2
1lcf/T0379-1lcf-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lcf/T0379-1lcf-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8700e+006.91e+00 1cb6A c.94.1.2
c.94.1.2
2fhpA/T0379-2fhpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fhpA/T0379-2fhpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8941e+002.27e+00
2c1vA/T0379-2c1vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1vA/T0379-2c1vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9574e+003.79e-01
1c24A/T0379-1c24A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c24A/T0379-1c24A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9969e+004.18e-02 1c24A d.127.1.1
1hz8A/T0379-1hz8A-t04-global-adpstyle1.a2m 1hz8A/T0379-1hz8A-t04-global-adpstyle1.al 5.1116e+004.34e+00 1i0uA g.3.11.1
g.3.11.1
1hj7A/T0379-1hj7A-t04-local-adpstyle1.a2m 1hj7A/T0379-1hj7A-t04-local-adpstyle1.al 5.1592e+002.19e+01 1emn g.3.11.1
g.3.11.1
2ggcA/T0379-2ggcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ggcA/T0379-2ggcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2850e+001.84e-01
1zip/T0379-1zip-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zip/T0379-1zip-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5947e+003.92e-04 1zin c.37.1.1
g.41.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001