Best Alignments for T0378

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1gz0A/T0378-1gz0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gz0A/T0378-1gz0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0927e-257.04e-129 c.116.1.1
d.79.3.3
1x7oA/T0378-1x7oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x7oA/T0378-1x7oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6455e-242.85e-117
1v2xA/T0378-1v2xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v2xA/T0378-1v2xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2834e-192.33e-80 c.116.1.1
1zjrA/T0378-1zjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zjrA/T0378-1zjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7774e-187.51e-82
1z85A/T0378-1z85A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z85A/T0378-1z85A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3845e-028.92e-30
1v6zA/T0378-1v6zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6zA/T0378-1v6zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8797e-019.63e-23
1qwgA/T0378-1qwgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qwgA/T0378-1qwgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4401e-011.92e-21 c.1.27.1
1vhyA/T0378-1vhyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vhyA/T0378-1vhyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4538e-013.50e-24 b.122.1.2
c.116.1.5
2as0A/T0378-2as0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2as0A/T0378-2as0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3076e-013.32e-26
1zxxA/T0378-1zxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zxxA/T0378-1zxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7367e-013.25e-13

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001