# List of top-scoring protein chains for T0378.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz0A 253 9.25e-26 c.116.1.1,d.79.3.3 76391,76392 1ipaA 274 1.22e-22 c.116.1.1,d.79.3.3 71254,71255 1x7oA 287 1.37e-21 1v2xA 194 5.07e-19 c.116.1.1 100274 1zjrA 211 1.56e-17 1mxiA 160 2.44e-11 c.116.1.1 79646 1h1yA 228 5.03e-01 c.1.2.2 76506 2atvA 196 4.27e+00 1z8rA 166 4.37e+00 2aqjA 538 4.48e+00 1yzkA 184 5.05e+00 2ar0A 541 5.67e+00 1wlsA 328 5.73e+00 1szqA 483 6.16e+00 e.44.1.1 99045 1tc5A 194 6.76e+00 c.110.1.1 106752 1cdoA 374 8.63e+00 2ohxA b.35.1.2,c.2.1.1 24747,29763 1bct 69 8.65e+00 1bct j.35.1.1 46237 1mc5A 374 9.00e+00 b.35.1.2,c.2.1.1 84929,84930 2fzeA 373 9.19e+00 1pe1A 267 9.20e+00 c.1.10.4 94591 1zhaA 267 9.92e+00 1knwA 425 9.93e+00 b.49.2.3,c.1.6.1 90969,90970 1lroA 267 9.97e+00 c.1.10.4 78161 1csyA 112 1.01e+01 1lckA d.93.1.1 40519 1qtwA 285 1.01e+01 1qumA c.1.15.1 29392 1z85A 234 1.08e+01 1oivA 191 1.39e+01 c.37.1.8 93076 1o60A 292 1.41e+01 c.1.10.4 92532 1c8rA 249 1.54e+01 1c3wA f.13.1.1 43407 2cwlA 302 1.56e+01 1s51A 227 1.58e+01 f.13.1.1 98517 1fbkA 248 1.59e+01 1c3wA f.13.1.1 43426 1l0mA 212 1.59e+01 f.13.1.1 73402 1kgbA 231 1.59e+01 f.13.1.1 68581 1s54A 227 1.60e+01 f.13.1.1 98523 1e0pA 228 1.60e+01 1c3wA f.13.1.1 43416 1r84A 232 1.60e+01 f.13.1.1 97218 1s52A 227 1.64e+01 f.13.1.1 98519 1s53A 227 1.65e+01 f.13.1.1 98521 1p8iA 249 1.69e+01 f.13.1.1 87945 1c8sA 196 1.70e+01 1c3wA f.13.1.1 43410 1brrA 247 1.71e+01 1c3wA f.13.1.1 43421 1cwqA 248 1.71e+01 1c3wA f.13.1.1 43412 1xjiA 247 1.72e+01 1qhjA 248 1.72e+01 1c3wA f.13.1.1 43409 1p8hA 249 1.72e+01 f.13.1.1 87944 1pxrA 249 1.73e+01 f.13.1.1 95297 1m0kA 262 1.73e+01 f.13.1.1 78344 1tn5A 249 1.80e+01 1oixA 191 1.80e+01 1pxsA 249 1.84e+01 f.13.1.1 95299 1q5jA 249 1.84e+01 f.13.1.1 95898 1p8uA 249 1.84e+01 f.13.1.1 87983 1tn0A 249 1.93e+01 1jv6A 249 1.93e+01 f.13.1.1 67346 1mgyA 249 1.97e+01 f.13.1.1 84959 1u08A 386 2.02e+01 c.67.1.1 107543 1f50A 227 2.04e+01 1c3wA f.13.1.1 43406 1puc 105 2.07e+01 1puc d.97.1.1 40675 1q9jA 422 2.09e+01 c.43.1.2,c.43.1.2 104590,104591 1jztA 246 2.12e+01 c.104.1.1 63319 1zemA 262 2.20e+01 1j8yF 297 2.27e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1d8cA 723 2.34e+01 1d8cA c.1.13.1 29325 1p7tA 731 2.36e+01 c.1.13.1 94319 1j8mF 297 2.49e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1f8fA 371 2.59e+01 b.35.1.2,c.2.1.1 83246,83247 1spiA 358 2.61e+01 1frpA e.7.1.1 42939 1a53 247 2.62e+01 1a53 c.1.2.4 28564 1jul 248 2.63e+01 1a53 c.1.2.4 28566 1op0A 234 2.75e+01 b.47.1.2 104019 1op2A 234 2.76e+01 b.47.1.2 104020 1jpc 109 2.86e+01 1b2pA b.78.1.1 27986 1el6A 219 2.90e+01 1el6B d.182.1.1 42606 1c3wA 222 2.92e+01 1c3wA f.13.1.1 43405 1sceA 112 2.96e+01 1puc d.97.1.1 40676 1k3rA 268 3.04e+01 b.40.4.10,c.116.1.2 72018,72019 1u9cA 224 3.11e+01 1zjjA 263 3.22e+01 1swvA 267 3.29e+01 2f4lA 297 3.50e+01 1fezA 256 3.67e+01 1fezA c.108.1.3 43343 1hzjA 348 3.73e+01 1xel c.2.1.2 61450 1f4qA 165 3.94e+01 1alvA a.39.1.8 17360 2ac5A 316 4.05e+01 1zm8A 259 4.17e+01 1rqlA 267 4.17e+01 c.108.1.3 97750 1k94A 165 4.22e+01 a.39.1.8 68333 1fybA 111 4.22e+01 4sgbI g.69.1.1,g.69.1.1 44726,44727 1qndA 123 4.32e+01 1qndA d.106.1.1 40794 2c3zA 222 4.35e+01 1ek6A 348 4.48e+01 1xel c.2.1.2 29800 1eaqA 140 4.55e+01 b.2.5.6 76144 2f1dA 207 4.58e+01 1c44A 123 4.65e+01 1qndA d.106.1.1 40795 1rjaA 100 4.69e+01 d.93.1.1 104962 1tz1A 80 4.72e+01 1iiuA 174 4.73e+01 b.60.1.1 66151 1bcfA 158 4.78e+01 1bcfA a.25.1.1 16648 2c1hA 328 4.82e+01 1d5sA 334 4.90e+01 e.1.1.1 42635 1ezxA 335 4.92e+01 1ovaA e.1.1.1 42629 2ac3A 316 4.94e+01 7apiA 347 4.94e+01 1ovaA e.1.1.1 42631 1dppA 507 4.99e+01 1dpe c.94.1.1 35800 1i3kA 348 5.03e+01 1xel c.2.1.2 61595 1dpe 507 5.04e+01 1dpe c.94.1.1 35799 1m93B 245 5.08e+01 1dcuA 357 5.12e+01 1frpA e.7.1.1 42943 1rdfA 267 5.19e+01 c.108.1.3 104884 1yobA 179 5.19e+01 1vddA 228 5.20e+01 e.49.1.1 108519 1ophA 394 5.21e+01 e.1.1.1 93404 1atu 374 5.32e+01 1ovaA e.1.1.1 42636 1bqyA 234 5.34e+01 5ptp b.47.1.2 26332 2d26A 358 5.34e+01 1qlpA 394 5.35e+01 1ovaA e.1.1.1 42628 1c8oA 300 5.36e+01 1c8oA e.1.1.1 42677 1psi 394 5.36e+01 1ovaA e.1.1.1 42634 1kct 394 5.37e+01 1ovaA e.1.1.1 42637 2f9lA 199 5.39e+01 1zba1 212 5.54e+01 2aiqA 231 5.58e+01 2madL 124 5.60e+01 2bbkL g.21.1.1 44887 1qmbA 326 5.65e+01 1ovaA e.1.1.1 42633 1zn8A 180 5.65e+01 1tih 53 5.71e+01 4sgbI g.69.1.1 44725 1ao5A 237 5.85e+01 5ptp b.47.1.2 26334 1iz2A 394 5.96e+01 e.1.1.1 76975 1dboA 506 6.00e+01 1dbgA b.80.1.4 28034 2c6qA 351 6.02e+01 1x53A 145 6.09e+01 2a7rA 366 6.09e+01 1qcwA 410 6.11e+01 1gox c.1.4.1 28622 1px5A 349 6.17e+01 a.160.1.2,d.218.1.6 95277,95278 1hp7A 394 6.17e+01 1ovaA e.1.1.1 61117 1zxxA 319 6.20e+01 1wm1A 317 6.27e+01 c.69.1.7 109405 1oflA 481 6.27e+01 b.80.1.4 103934 1hqmC 1119 6.38e+01 i.8.1.1 45974 1ynjC 1119 6.39e+01 1kbjA 412 6.42e+01 c.1.4.1 72280 1i6vC 1118 6.44e+01 e.29.1.1 61856 1l9uC 1118 6.46e+01 i.8.1.1 73750 2f15A 96 6.55e+01 2fgeA 995 6.68e+01 1ytpA 53 6.79e+01 1dbzA 357 6.98e+01 1frpA e.7.1.1 42951 2a6hC 1119 7.28e+01 1p57A 114 7.37e+01 d.170.1.2 94125 2ajgA 196 7.38e+01 2h6nA 312 7.45e+01 2gnqA 336 7.55e+01 1ppjE 196 7.58e+01 b.33.1.1,f.23.12.1 104260,104261 1x94A 191 7.78e+01 c.80.1.3 109522 1vheA 373 7.80e+01 b.49.3.1,c.56.5.4 100669,100670 1o5zA 442 7.86e+01 c.59.1.2,c.72.2.2 92530,92531 1zwhA 240 7.91e+01 1uazA 254 8.06e+01 f.13.1.1 88392 1u7zA 226 8.12e+01 1u0tA 307 8.13e+01 e.52.1.1 107567 1y3hA 307 8.14e+01 1bccE 196 8.21e+01 1rie b.33.1.1,f.23.12.1 24431,43699 1rie 129 8.25e+01 1rie b.33.1.1 24427 2bvyA 475 8.32e+01 1q5iA 249 8.65e+01 f.13.1.1 95896 1xq1A 266 8.67e+01 1cc1L 498 8.71e+01 1h2rL e.18.1.1 43301 1bmtA 246 8.74e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235