# List of top-scoring protein chains for T0377.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ivyA 101 3.52e-14 1zpwX 90 5.51e-11 1uw1A 80 2.08e-01 k.42.1.1 100069 1uujA 88 3.63e+00 a.221.1.1 108046 1g16A 170 4.72e+00 1ctqA c.37.1.8 32022 1z5yE 149 9.54e+00 1dfmA 223 1.10e+01 1d2iA c.52.1.5 33295 1z0iA 170 1.35e+01 1z08A 170 1.37e+01 1t8qA 336 1.38e+01 c.1.18.3 106669 2fu5C 183 1.41e+01 1ydyA 356 1.41e+01 1yztA 184 1.42e+01 1varA 198 1.46e+01 1avmA a.2.11.1,d.44.1.1 15756,38715 1yvdA 169 1.55e+01 1z0jA 170 1.59e+01 1vyhC 410 1.76e+01 2folA 191 1.86e+01 1txuA 273 1.87e+01 a.222.1.1 107439 1j3iA 280 2.00e+01 c.71.1.1 84062 1em1A 198 2.03e+01 1avmA a.2.11.1,d.44.1.1 15752,38711 1j3jA 280 2.04e+01 c.71.1.1 84066 1ja8A 198 2.05e+01 1avmA a.2.11.1,d.44.1.1 62813,62814 1pl4A 198 2.06e+01 a.2.11.1,d.44.1.1 94854,94855 1pm9A 198 2.06e+01 a.2.11.1,d.44.1.1 94897,94898 1zspA 198 2.06e+01 1xdcA 198 2.06e+01 1qnmA 198 2.07e+01 1avmA a.2.11.1,d.44.1.1 15754,38713 2gdsA 198 2.07e+01 1zteA 198 2.07e+01 1n0jA 199 2.08e+01 a.2.11.1,d.44.1.1 79740,79741 1zuqA 198 2.08e+01 2adpA 198 2.09e+01 1xilA 198 2.09e+01 1j3kA 280 2.10e+01 c.71.1.1 84070 1luwA 198 2.10e+01 a.2.11.1,d.44.1.1 74267,74268 1szxA 198 2.10e+01 a.2.11.1,d.44.1.1 99049,99050 1n0nA 199 2.13e+01 a.2.11.1,d.44.1.1 79750,79751 1m7bA 184 2.44e+01 c.37.1.8 74572 1oz9A 150 2.47e+01 d.92.1.15 93808 1udh 244 2.62e+01 3eugA c.18.1.1 31015 2c53A 244 2.85e+01 1gwnA 205 2.88e+01 c.37.1.8 70672 1yznA 185 2.94e+01 1ukvY 206 3.27e+01 c.37.1.8 107918 2bcgY 206 3.28e+01 1qa9B 95 3.36e+01 1cczA b.1.1.1 19759 1ho1A 242 3.37e+01 1ho1A c.1.24.1 61097 1m5wA 243 3.38e+01 c.1.24.1 84836 1vi4A 174 3.40e+01 c.8.7.1 100731 1v7zA 260 3.49e+01 c.125.1.1 100488 2bpsA 81 3.64e+01 1cx4A 305 3.68e+01 b.82.3.2,b.82.3.2 59099,59100 1lyp 32 3.99e+01 1lyp j.17.1.1 46169 1mngA 203 4.03e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1b1bA 140 4.17e+01 1bi0 a.4.5.24,a.76.1.1 16215,18421 1z0kA 172 4.91e+01 1q3kA 259 4.92e+01 c.125.1.1 95693 1yu9A 175 5.08e+01 2fb0A 94 5.29e+01 1flzA 228 5.35e+01 3eugA c.18.1.1 31027 3eugA 229 5.36e+01 3eugA c.18.1.1 31018 1eugA 229 5.53e+01 3eugA c.18.1.1 31021 1vgjA 184 5.58e+01 1iruH 205 5.64e+01 d.153.1.4 71359 3rabA 169 5.70e+01 1ctqA c.37.1.8 32018 2bo4A 397 5.74e+01 2bmeA 186 5.86e+01 1iznB 277 5.87e+01 e.43.1.2 83848 4eugA 229 5.91e+01 3eugA c.18.1.1 31019 2g2kA 170 6.20e+01 1p1tA 104 6.41e+01 d.58.7.1 93899 1euiA 228 6.44e+01 3eugA c.18.1.1 31028 1y8xB 98 6.45e+01 1x2kA 68 6.45e+01 1uugA 229 6.46e+01 3eugA c.18.1.1 31023 1zlmA 58 6.57e+01 2uugA 229 6.71e+01 3eugA c.18.1.1 31025 1zbdA 203 6.79e+01 1ctqA c.37.1.8 32019 1huqA 164 6.82e+01 1byuA c.37.1.8 32020 1kafA 108 6.86e+01 d.199.1.1 68372 1z07A 166 6.90e+01 1khyA 148 7.09e+01 a.174.1.1 77410 1z0dA 167 7.14e+01 1i3jA 116 7.19e+01 1i3jA d.285.1.1 61594 1fx7A 230 7.28e+01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1knxA 312 7.56e+01 c.98.2.1,c.91.1.2 77459,77460 1z0aA 174 7.74e+01 1y60A 169 7.77e+01 1d5cA 162 7.80e+01 1ctqA c.37.1.8 32021 1sgwA 214 7.87e+01 c.37.1.12 105541 1xmqD 209 7.90e+01 1n32D 208 7.90e+01 d.66.1.2 79872 1i35A 95 8.00e+01 d.15.1.5 66017 1x9bA 53 8.02e+01 1d1gA 168 8.15e+01 1d1gA c.71.1.1 34889 1fjgD 209 8.17e+01 1c05A d.66.1.2 39553 2fbmA 291 8.28e+01 1odsA 318 8.35e+01 c.69.1.25 86877 1odtC 318 8.39e+01 c.69.1.25 86885 1h1rB 258 8.50e+01 a.74.1.1,a.74.1.1 76490,76491 2f15A 96 8.54e+01 1k8rB 110 8.56e+01 d.15.1.5 72180 1l7aA 318 8.57e+01 c.69.1.25 77772 2c5nB 259 8.60e+01 1e9hB 261 8.61e+01 a.74.1.1,a.74.1.1 64813,64814 2cchB 260 8.68e+01 1oiuB 260 8.69e+01 a.74.1.1,a.74.1.1 103959,103960 2a5jA 191 8.98e+01