# List of top-scoring protein chains for T0377.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ivyA 101 4.31e-11 1zpwX 90 4.14e-10 1uw1A 80 8.99e-01 k.42.1.1 100069 1mngA 203 1.20e+00 1avmA a.2.11.1,d.44.1.1 15776,38701 1varA 198 1.86e+00 1avmA a.2.11.1,d.44.1.1 15756,38715 1pl4A 198 2.35e+00 a.2.11.1,d.44.1.1 94854,94855 1pm9A 198 2.37e+00 a.2.11.1,d.44.1.1 94897,94898 1em1A 198 2.41e+00 1avmA a.2.11.1,d.44.1.1 15752,38711 1szxA 198 2.46e+00 a.2.11.1,d.44.1.1 99049,99050 1zspA 198 2.49e+00 1xdcA 198 2.50e+00 1zuqA 198 2.50e+00 1zteA 198 2.50e+00 1n0jA 199 2.50e+00 a.2.11.1,d.44.1.1 79740,79741 2adpA 198 2.51e+00 1n0nA 199 2.51e+00 a.2.11.1,d.44.1.1 79750,79751 1luwA 198 2.51e+00 a.2.11.1,d.44.1.1 74267,74268 1xilA 198 2.52e+00 2gdsA 198 2.52e+00 1qnmA 198 2.59e+00 1avmA a.2.11.1,d.44.1.1 15754,38713 1ja8A 198 2.59e+00 1avmA a.2.11.1,d.44.1.1 62813,62814 1uujA 88 9.39e+00 a.221.1.1 108046 1g16A 170 1.22e+01 1ctqA c.37.1.8 32022 1m7bA 184 1.38e+01 c.37.1.8 74572 1gwnA 205 1.59e+01 c.37.1.8 70672 1mseC 105 1.74e+01 1a5j a.4.1.3,a.4.1.3 16039,16040 1gv2A 105 1.75e+01 a.4.1.3,a.4.1.3 83335,83336 2fu5C 183 2.01e+01 1yvdA 169 2.14e+01 1z0jA 170 2.15e+01 1vgjA 184 2.33e+01 1ydyA 356 2.37e+01 1t8qA 336 2.37e+01 c.1.18.3 106669 1y6jA 318 2.72e+01 1jr9A 202 2.78e+01 a.2.11.1,d.44.1.1 71822,71823 1xkyA 301 2.81e+01 1n10A 241 2.85e+01 b.7.3.1,b.52.1.3 79774,79775 1h89C 159 2.86e+01 a.4.1.3,a.4.1.3,a.4.1.3 65726,65727,65728 2heiA 179 2.87e+01 1mw7A 240 2.93e+01 e.39.1.1 79557 1t5rA 284 3.12e+01 f.6.1.1 106465 1oz9A 150 3.59e+01 d.92.1.15 93808 1n6rA 170 3.64e+01 c.37.1.8 80211 1vf8A 377 3.69e+01 1r2qA 170 3.70e+01 c.37.1.8 96874 1vyhC 410 3.70e+01 1tu4A 171 3.75e+01 2folA 191 3.79e+01 1n6nA 170 3.83e+01 c.37.1.8 80201 1n6kA 170 3.84e+01 c.37.1.8 80199 1gv5A 52 4.16e+01 a.4.1.3 83337 1z08A 170 4.16e+01 1z0iA 170 4.17e+01 1n6pA 170 4.20e+01 c.37.1.8 80203 1yztA 184 4.27e+01 1n6oA 170 4.32e+01 c.37.1.8 80202 1j3tA 74 4.48e+01 b.34.2.1 103839 1apxA 249 4.50e+01 1ryc a.93.1.1 18669 1wdiA 345 4.59e+01 1wthD 391 4.62e+01 1d5cA 162 4.85e+01 1ctqA c.37.1.8 32021 1i3jA 116 4.96e+01 1i3jA d.285.1.1 61594 1udh 244 5.01e+01 3eugA c.18.1.1 31015 3eugA 229 5.10e+01 3eugA c.18.1.1 31018 1flzA 228 5.10e+01 3eugA c.18.1.1 31027 1odsA 318 5.16e+01 c.69.1.25 86877 1eugA 229 5.35e+01 3eugA c.18.1.1 31021 1l6rA 227 5.36e+01 c.108.1.10 77768 1q5qH 235 5.51e+01 d.153.1.4 95911 1odtC 318 5.55e+01 c.69.1.25 86885 1i7qA 519 5.71e+01 1qdlA d.161.1.1 61901 1i35A 95 5.71e+01 d.15.1.5 66017 1l7aA 318 5.73e+01 c.69.1.25 77772 1d3e2 252 5.75e+01 1c8m2 252 5.96e+01 1aym2 2c53A 244 6.00e+01 1aym2 261 6.18e+01 1aym2 1huqA 164 6.20e+01 1byuA c.37.1.8 32020 1qqnA 378 6.25e+01 1ba1 c.55.1.1,c.55.1.1 33393,33394 1sqgA 429 6.32e+01 a.79.1.3,c.66.1.38 105912,105913 4eugA 229 6.33e+01 3eugA c.18.1.1 31019 1q5rH 294 6.33e+01 d.153.1.4 95925 1k8rB 110 6.38e+01 d.15.1.5 72180 1euiA 228 6.41e+01 3eugA c.18.1.1 31028 1uugA 229 6.41e+01 3eugA c.18.1.1 31023 1z0dA 167 6.50e+01 1p1eA 101 6.57e+01 b.36.1.1 93898 1z07A 166 6.71e+01 1khyA 148 6.71e+01 a.174.1.1 77410 1vi4A 174 6.80e+01 c.8.7.1 100731 1sxvA 172 6.96e+01 2agjL 215 7.00e+01 1vqoJ 145 7.17e+01 1z5yE 149 7.18e+01 1mbg 53 7.28e+01 a.4.1.3 16033 2cyeA 133 7.41e+01 1v5qA 122 7.67e+01 b.36.1.1 108383 1ug2A 95 7.74e+01 a.4.1.3 107823 1x6fA 88 7.77e+01 2uugA 229 7.88e+01 3eugA c.18.1.1 31025 2b2nA 344 8.27e+01 2ew0A 192 8.34e+01 2b9eA 303 8.36e+01 3rabA 169 8.36e+01 1ctqA c.37.1.8 32018 1rpmA 278 8.44e+01 2shpA c.45.1.2 32679 1gvdA 52 8.45e+01 a.4.1.3 83338 1hl9A 449 8.56e+01 b.71.1.3,c.1.8.11 90650,90651 1z6xA 180 8.57e+01 1wzcA 249 8.78e+01 1dfmA 223 8.88e+01 1d2iA c.52.1.5 33295 1oapA 109 8.95e+01 d.79.7.1 92706