# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 1.69e-10 1vgjA 184 1.23e-01 1ydyA 356 1.28e-01 1uw1A 80 3.38e-01 k.42.1.1 100069 1gyxA 76 1.26e+00 d.80.1.1 76387 1l6rA 227 2.24e+00 c.108.1.10 77768 1wzcA 249 2.28e+00 1fmcA 255 2.34e+00 1cydA c.2.1.2 29856 1m7bA 184 3.10e+00 c.37.1.8 74572 1pl8A 356 3.23e+00 b.35.1.2,c.2.1.1 94878,94879 1af7 274 3.27e+00 1af7 a.58.1.1,c.66.1.8 17928,34203 1sqgA 429 3.79e+00 a.79.1.3,c.66.1.38 105912,105913 1sr9A 644 4.04e+00 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1ta9A 450 4.48e+00 1bc5A 269 4.52e+00 1af7 a.58.1.1,c.66.1.8 17929,34204 1yqgA 263 4.81e+00 1vb3A 428 5.28e+00 1iv3A 152 5.35e+00 d.79.5.1 76828 1omoA 322 5.62e+00 c.2.1.13 104017 1oz9A 150 6.14e+00 d.92.1.15 93808 1bupA 386 7.13e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1gd0A 122 7.42e+00 1dptA d.80.1.3 39834 2ge3A 170 8.86e+00 1vpdA 299 9.77e+00 1us5A 314 1.02e+01 c.94.1.1 99856 1v72A 356 1.16e+01 1iv8A 720 1.55e+01 b.71.1.1,c.1.8.1 76842,76843 1pvgA 418 1.58e+01 d.14.1.3,d.122.1.2 95161,95162 1qu9A 128 1.61e+01 1qu9A d.79.1.1 39755 1vheA 373 1.63e+01 b.49.3.1,c.56.5.4 100669,100670 1t6nA 220 1.72e+01 c.37.1.19 106576 1qysA 106 1.73e+01 k.41.1.1 96603 1r2qA 170 1.73e+01 c.37.1.8 96874 2a5jA 191 1.75e+01 1eyqA 222 1.76e+01 1eypA d.36.1.1 38534 1mqeA 207 1.87e+01 d.113.1.1 91394 2bkaA 242 2.01e+01 1v5iB 76 2.14e+01 2b9eA 303 2.16e+01 1uarA 285 2.17e+01 c.46.1.2,c.46.1.2 107762,107763 1ja9A 274 2.24e+01 c.2.1.2 62817 2fafA 608 2.24e+01 1oaoC 729 2.27e+01 e.26.1.3 86746 1v71A 323 2.27e+01 1lkdA 297 2.40e+01 d.32.1.3,d.32.1.3 78059,78060 1m5wA 243 2.56e+01 c.1.24.1 84836 1nh2B 53 2.59e+01 a.32.1.1 91874 2ebn 289 2.61e+01 2ebn c.1.8.5 28990 1z08A 170 2.76e+01 1mxgA 435 2.77e+01 b.71.1.1,c.1.8.1 85193,85194 1dptA 117 2.78e+01 1dptA d.80.1.3 39862 2ae2A 260 2.81e+01 1bdb c.2.1.2 29945 2gf9A 189 2.86e+01 2axiA 115 2.89e+01 1vmbA 140 2.93e+01 2f02A 323 2.97e+01 2bmeA 186 2.97e+01 1hfoA 113 3.00e+01 d.80.1.3 61006 1m1nB 522 3.00e+01 c.92.2.3 78418 1j93A 353 3.02e+01 c.1.22.1 66454 1aua 296 3.09e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1aisA 182 3.19e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1uyrA 737 3.33e+01 c.14.1.4,c.14.1.4 100188,100189 1w2xA 758 3.34e+01 c.14.1.4,c.14.1.4 109134,109135 1dmgA 225 3.41e+01 1dmgA c.22.1.1 31036 1ve4A 206 3.64e+01 1ursA 402 3.73e+01 c.94.1.1 99833 2b5wA 357 3.78e+01 1j57A 143 3.84e+01 d.221.1.1 77079 1xo1A 291 3.88e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 2ftxA 90 3.91e+01 1jr2A 286 3.91e+01 c.113.1.1 67111 1o63A 219 3.92e+01 c.94.1.1 92540 2a5hA 416 3.94e+01 1otfA 62 3.95e+01 1otfA d.80.1.1 39820 1ryoA 327 4.06e+01 c.94.1.2 98108 1l7aA 318 4.12e+01 c.69.1.25 77772 1n0wA 243 4.12e+01 c.37.1.11 79772 1s0yB 71 4.16e+01 d.80.1.1 98315 2dbsA 90 4.18e+01 1vl4A 447 4.20e+01 d.283.1.1 108718 1zdnA 158 4.26e+01 1a2zA 220 4.27e+01 1a2zA c.56.4.1 33794 1v6zA 228 4.31e+01 2bgkA 278 4.37e+01 1gz2A 142 4.38e+01 d.169.1.1 83392 1wn2A 121 4.43e+01 1wy1A 172 4.45e+01 1ek0A 170 4.65e+01 1ctqA c.37.1.8 32076 2gqrA 237 4.71e+01 1rqbA 539 4.74e+01 a.5.7.2,c.1.10.5 105057,105058 1m6yA 301 4.75e+01 a.60.13.1,c.66.1.23 78716,78717 1c93A 265 4.76e+01 2ebn c.1.8.5 28998 2gdzA 267 4.79e+01 2cw8A 537 4.83e+01 1ixcA 294 4.85e+01 a.4.5.37,c.94.1.1 83764,83765 1jh6A 189 4.87e+01 d.61.1.1 66707 1dp4A 435 4.90e+01 1dp4A c.93.1.1 35710 2fiuA 99 4.98e+01 1oapA 109 4.99e+01 d.79.7.1 92706 8rucI 123 5.20e+01 1rboC d.73.1.1 39629 1afwA 393 5.22e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1kq3A 376 5.24e+01 e.22.1.2 68790 1ysrA 150 5.27e+01 1xviA 275 5.30e+01 1r4pA 297 5.36e+01 d.165.1.2 97025 1lfpA 249 5.37e+01 e.39.1.1 73885 1wr2A 238 5.43e+01 1h8eD 482 5.53e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1thg 544 5.62e+01 1thg c.69.1.17 34763 1t0yA 122 5.64e+01 d.15.1.1 99066 1nhkL 144 5.64e+01 1npk d.58.6.1 39142 1qd9A 124 5.65e+01 1qu9A d.79.1.1 39758 1qsgA 265 5.69e+01 1eny c.2.1.2 29935 1fg7A 356 5.72e+01 1gewA c.67.1.1 59819 1od6A 160 5.73e+01 c.26.1.3 86836 2fpmA 322 5.75e+01 1vflA 356 5.80e+01 2abqA 306 5.81e+01 1udh 244 5.84e+01 3eugA c.18.1.1 31015 1zm7A 230 5.87e+01 2ck3D 482 5.91e+01 1kqpA 271 6.05e+01 c.26.2.1 72883 2c07A 285 6.21e+01 2h1rA 299 6.26e+01 1u0kA 288 6.29e+01 d.21.1.2,d.21.1.2 107547,107548 1s0yA 76 6.31e+01 d.80.1.1 98314 1h4vB 421 6.35e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1qf9A 194 6.37e+01 1zin c.37.1.1 31848 1zxmA 400 6.42e+01 2f96A 224 6.43e+01 1y74A 57 6.43e+01 1ta3A 274 6.56e+01 c.1.8.5 106731 2bt9A 90 6.60e+01 1seiA 130 6.88e+01 1seiA d.140.1.1 41463 1z0jA 170 6.90e+01 1u55A 188 6.92e+01 d.278.1.1 107677 1h65A 270 7.06e+01 c.37.1.8 65640 2bzgA 232 7.07e+01 1x6mA 196 7.19e+01 1uujA 88 7.20e+01 a.221.1.1 108046 1on0A 158 7.38e+01 d.108.1.1 87095 1e0cA 271 7.58e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1u2zA 433 7.68e+01 c.66.1.31 107626 1j0dA 341 7.73e+01 c.79.1.1 83902 1vkiA 181 7.74e+01 d.116.1.1 108664 1twuA 139 7.83e+01 d.32.1.8 107413 1f00I 282 7.85e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1vcvA 226 7.91e+01 1u6zA 513 8.03e+01 1g6sA 427 8.06e+01 1eps d.68.2.2 39584 1f8mA 429 8.13e+01 1dquA c.1.12.7 29315 1hl9A 449 8.21e+01 b.71.1.3,c.1.8.11 90650,90651 1wnaA 131 8.21e+01 1nvpB 57 8.23e+01 a.32.1.1 92211 1vi9A 299 8.37e+01 c.72.1.5 100750 1pb1A 416 8.41e+01 c.77.1.1 88014 1g66A 207 8.44e+01 1bs9 c.69.1.30 31329 1xhnA 184 8.47e+01 1ugjA 141 8.53e+01 b.41.1.3 107826 1go3F 107 8.56e+01 a.60.8.2 65407 1v7rA 186 8.57e+01 c.51.4.1 100482 1w1oA 534 8.61e+01 d.58.32.4,d.145.1.1 109071,109072 1a73A 163 8.64e+01 1a73A d.4.1.3 37145 1ockA 412 8.75e+01 c.117.1.1 86802 1u7iA 136 8.76e+01 d.32.1.7 107724 2bjnA 160 8.83e+01 1jsdB 176 8.89e+01 h.3.1.1 63259 1pzgA 331 8.96e+01 c.2.1.5,d.162.1.1 95425,95426 1a9xB 379 8.99e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409