# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 2.50e-17 1vgjA 184 4.30e-03 1oz9A 150 3.16e-02 d.92.1.15 93808 1wzcA 249 7.62e-02 1m7bA 184 1.18e-01 c.37.1.8 74572 1fmcA 255 2.00e-01 1cydA c.2.1.2 29856 1ydyA 356 2.24e-01 1r2qA 170 4.22e-01 c.37.1.8 96874 1lkdA 297 5.01e-01 d.32.1.3,d.32.1.3 78059,78060 1z08A 170 5.27e-01 2bcgY 206 5.50e-01 1sqgA 429 6.84e-01 a.79.1.3,c.66.1.38 105912,105913 1uw1A 80 8.08e-01 k.42.1.1 100069 1omoA 322 8.35e-01 c.2.1.13 104017 2ezvA 269 1.49e+00 1v5iB 76 1.53e+00 1eyqA 222 1.60e+00 1eypA d.36.1.1 38534 1ta9A 450 1.60e+00 2f02A 323 1.77e+00 2f15A 96 1.87e+00 2a5jA 191 2.00e+00 1us5A 314 2.43e+00 c.94.1.1 99856 2bmeA 186 2.76e+00 1w1oA 534 2.81e+00 d.58.32.4,d.145.1.1 109071,109072 1t6t1 118 2.98e+00 1j57A 143 3.01e+00 d.221.1.1 77079 1guzA 310 3.30e+00 c.2.1.5,d.162.1.1 65586,65587 1uujA 88 3.84e+00 a.221.1.1 108046 2ge3A 170 4.11e+00 1vb3A 428 4.33e+00 1qf9A 194 4.61e+00 1zin c.37.1.1 31848 2fafA 608 4.77e+00 1pvgA 418 4.80e+00 d.14.1.3,d.122.1.2 95161,95162 2gf9A 189 4.85e+00 1pzgA 331 5.43e+00 c.2.1.5,d.162.1.1 95425,95426 1hl9A 449 5.44e+00 b.71.1.3,c.1.8.11 90650,90651 1vl5A 260 5.44e+00 c.66.1.41 108720 2axiA 115 5.45e+00 1vp4A 425 5.81e+00 1a73A 163 5.90e+00 1a73A d.4.1.3 37145 2b9eA 303 5.98e+00 1oapA 109 6.08e+00 d.79.7.1 92706 1e0cA 271 6.08e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1s5jA 847 6.32e+00 2ae2A 260 6.36e+00 1bdb c.2.1.2 29945 2g6bA 180 6.37e+00 4tmkA 213 6.42e+00 5tmpA c.37.1.1 31930 2h1rA 299 6.54e+00 1qu9A 128 6.59e+00 1qu9A d.79.1.1 39755 1aua 296 6.95e+00 1aua a.5.3.1,c.13.1.1 16290,30882 2gjsA 176 6.97e+00 1mjfA 281 7.53e+00 c.66.1.17 79198 2fq3A 104 7.84e+00 2c07A 285 7.88e+00 1iv3A 152 8.01e+00 d.79.5.1 76828 1gz2A 142 8.20e+00 d.169.1.1 83392 1gca 309 8.41e+00 1gca c.93.1.1 35659 1xviA 275 8.48e+00 1ja9A 274 8.52e+00 c.2.1.2 62817 1uekA 275 8.52e+00 d.14.1.5,d.58.26.5 88483,88484 1mxiA 160 8.77e+00 c.116.1.1 79646 1iv8A 720 9.15e+00 b.71.1.1,c.1.8.1 76842,76843 1bupA 386 9.27e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1z0nA 96 9.28e+00 1aisA 182 9.34e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1vicA 262 9.38e+00 c.68.1.13 100756 1r4pA 297 9.71e+00 d.165.1.2 97025 5csmA 256 1.03e+01 5csmA a.130.1.2 19494 2bgkA 278 1.04e+01 1rtqA 299 1.05e+01 c.56.5.4 97819 2bkaA 242 1.06e+01 2gw8A 114 1.09e+01 1udh 244 1.12e+01 3eugA c.18.1.1 31015 2cx1A 187 1.13e+01 1e5rA 290 1.14e+01 1e5rA b.82.2.4 59276 1seiA 130 1.15e+01 1seiA d.140.1.1 41463 2gq1A 332 1.18e+01 1v7rA 186 1.19e+01 c.51.4.1 100482 1vheA 373 1.19e+01 b.49.3.1,c.56.5.4 100669,100670 1jmsA 381 1.19e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1ohvA 472 1.21e+01 c.67.1.4 93031 1isiA 265 1.23e+01 e.4.1.1 71394 1kkhA 317 1.26e+01 d.14.1.5,d.58.26.3 72645,72646 1gd0A 122 1.26e+01 1dptA d.80.1.3 39834 1ek0A 170 1.32e+01 1ctqA c.37.1.8 32076 1m5wA 243 1.33e+01 c.1.24.1 84836 1n7kA 234 1.35e+01 c.1.10.1 85374 1owlA 484 1.36e+01 a.99.1.1,c.28.1.1 93647,93648 1cczA 171 1.40e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1ugjA 141 1.40e+01 b.41.1.3 107826 1k66A 149 1.40e+01 c.23.1.1 90941 1vljA 407 1.41e+01 e.22.1.2 108832 1qsgA 265 1.45e+01 1eny c.2.1.2 29935 1up7A 417 1.48e+01 1z3eA 132 1.49e+01 1ixkA 315 1.53e+01 c.66.1.38 90716 8rucI 123 1.57e+01 1rboC d.73.1.1 39629 1gs5A 258 1.59e+01 c.73.1.2 70395 1gyxA 76 1.60e+01 d.80.1.1 76387 1q7sA 117 1.61e+01 c.131.1.1 96055 2ftxA 90 1.61e+01 1kw3B 292 1.62e+01 d.32.1.3,d.32.1.3 77549,77550 1x3sA 195 1.68e+01 1zd9A 188 1.71e+01 1rqbA 539 1.71e+01 a.5.7.2,c.1.10.5 105057,105058 1ly1A 181 1.71e+01 c.37.1.1 74334 2c1iA 431 1.73e+01 1dw0A 112 1.76e+01 1dw0A a.3.1.1 15911 1srvA 145 1.78e+01 1derA c.8.5.1 30817 1a9xB 379 1.81e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1fseA 74 1.81e+01 1fseA a.4.6.2 60000 2f9lA 199 1.86e+01 1g6sA 427 1.86e+01 1eps d.68.2.2 39584 1regX 122 1.87e+01 1regX d.58.27.1 39406 1uyrA 737 1.87e+01 c.14.1.4,c.14.1.4 100188,100189 1uv7A 110 1.89e+01 d.67.4.1 100040 1v6zA 228 1.90e+01 1ng0A 253 1.91e+01 b.121.4.7 80475 1w2xA 758 1.94e+01 c.14.1.4,c.14.1.4 109134,109135 1yg9A 330 1.95e+01 1ltqA 301 1.96e+01 c.108.1.9,c.37.1.1 78208,78209 2a1iA 146 1.99e+01 1wn2A 121 1.99e+01 1uxjA 309 2.04e+01 c.2.1.5,d.162.1.1 108112,108113 1wvqA 167 2.07e+01 1mxgA 435 2.08e+01 b.71.1.1,c.1.8.1 85193,85194 2fiuA 99 2.09e+01 1yzqA 170 2.11e+01 2czdA 208 2.13e+01 1hfoA 113 2.14e+01 d.80.1.3 61006 2beiA 170 2.14e+01 1azo 232 2.27e+01 1azo c.52.1.14 33329 1u55A 188 2.27e+01 d.278.1.1 107677 1c30B 382 2.28e+01 c.8.3.1,c.23.16.1 30736,31413 2b2nA 344 2.29e+01 1fzqA 181 2.32e+01 1hurA c.37.1.8 32060 1kq3A 376 2.36e+01 e.22.1.2 68790 1q8bA 105 2.39e+01 d.58.4.6 96201 1vcvA 226 2.44e+01 1cqmA 101 2.48e+01 1ris d.58.14.1 39321 2bj7A 138 2.53e+01 1jyhA 157 2.54e+01 d.60.1.3 71956 1pbuA 162 2.57e+01 d.58.46.1 88030 1dd9A 338 2.59e+01 1dd9A e.13.1.1 43254 1txuA 273 2.64e+01 a.222.1.1 107439 1rxdA 159 2.66e+01 1u6zA 513 2.68e+01 1xu9A 286 2.70e+01 1sr9A 644 2.74e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1dwkA 156 2.75e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1uu1A 335 2.77e+01 c.67.1.1 99993 1t92A 116 2.77e+01 1l6rA 227 2.88e+01 c.108.1.10 77768 1yzxA 226 2.91e+01 1zxmA 400 2.92e+01 2c71A 216 2.94e+01 1y74A 57 2.96e+01 1dqpA 230 2.97e+01 1dqnA c.61.1.1 34069 1eayC 74 3.06e+01 1eayC d.58.24.1 39386 1o4sA 389 3.13e+01 c.67.1.1 86620 1j09A 468 3.22e+01 a.97.1.1,c.26.1.1 77025,77026 1y14A 187 3.23e+01 1i19A 561 3.24e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1u0kA 288 3.26e+01 d.21.1.2,d.21.1.2 107547,107548 2g9iA 249 3.32e+01 2bu3A 254 3.33e+01 1nh2B 53 3.35e+01 a.32.1.1 91874 1on0A 158 3.44e+01 d.108.1.1 87095 2brcA 214 3.50e+01 1ekeA 230 3.55e+01 1ekeA c.55.3.1 33572 1jbeA 128 3.56e+01 3chy c.23.1.1 62845 1wjgA 137 3.61e+01 1a2zA 220 3.62e+01 1a2zA c.56.4.1 33794 1afwA 393 3.64e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1b3tA 147 3.70e+01 1b3tA d.58.8.1 39228 1qysA 106 3.71e+01 k.41.1.1 96603 1p1xA 260 3.72e+01 c.1.10.1 104060 1zdnA 158 3.78e+01 1vdmA 153 3.84e+01 2a1hA 365 3.89e+01 1e8aA 91 3.91e+01 1b4cA a.39.1.2 17188 1lyp 32 3.91e+01 1lyp j.17.1.1 46169 1gvdA 52 3.91e+01 a.4.1.3 83338 1xdzA 240 4.01e+01 1ve3A 227 4.03e+01 1ccwA 137 4.04e+01 1be1 c.23.6.1 31238 1jbiA 100 4.05e+01 d.209.1.1 66481 1h5rA 293 4.07e+01 c.68.1.6 65623 1k7wA 468 4.10e+01 a.127.1.1 72130 1gx5A 536 4.25e+01 e.8.1.4 70682 1tjvA 474 4.26e+01 a.127.1.1 107054 2fldA 165 4.31e+01 2aotA 292 4.34e+01 1tvlA 454 4.34e+01 c.1.16.4 107366 1obbA 480 4.37e+01 c.2.1.5,d.162.1.2 86760,86761 2a5hA 416 4.40e+01 2f3yA 148 4.46e+01 1hyeA 313 4.47e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1mho 88 4.54e+01 1b4cA a.39.1.2 17171 2cy2A 174 4.58e+01 2an3A 289 4.59e+01 1pq1A 196 4.68e+01 f.1.4.1 94986 1tbxA 99 4.68e+01 a.4.5.48 106748 1mzhA 225 4.71e+01 c.1.10.1 79698 1vqoZ 83 4.71e+01 1go3F 107 4.80e+01 a.60.8.2 65407 1qz5A 375 4.80e+01 c.55.1.1,c.55.1.1 96614,96615 1sfp 114 4.82e+01 1sfp b.23.1.1 23895 1ggzA 148 4.87e+01 a.39.1.5 70176 1pt6A 213 4.87e+01 c.62.1.1 95091 2dbsA 90 4.88e+01 1ykdA 398 4.89e+01 1q7hA 153 4.95e+01 b.122.1.1,d.17.6.2 96042,96043 2cw8A 537 5.01e+01 1n9eA 787 5.04e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2bl0C 142 5.04e+01 1jh6A 189 5.05e+01 d.61.1.1 66707 2ftbA 125 5.14e+01 2fywA 267 5.28e+01 1h4vB 421 5.28e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 5nul 138 5.30e+01 5nul c.23.5.1 31191 1nvmA 345 5.30e+01 a.5.7.1,c.1.10.5 86249,86250 1rypH 205 5.42e+01 d.153.1.4 41876 1byyA 53 5.42e+01 j.12.1.1 46147 1jsf 130 5.43e+01 3lzt d.2.1.2 36410 1xb2B 291 5.43e+01 1z2lA 423 5.46e+01 1ydwA 362 5.48e+01 2fxuA 375 5.54e+01 1m1hA 248 5.57e+01 b.114.1.1,d.58.42.1 78415,78416 1twuA 139 5.59e+01 d.32.1.8 107413 2fcjA 119 5.61e+01 1px5A 349 5.62e+01 a.160.1.2,d.218.1.6 95277,95278 1em8B 112 5.64e+01 c.126.1.1 90458 1o26A 232 5.70e+01 d.207.1.1 86566 1mixA 206 5.70e+01 a.11.2.1,b.55.1.5 79166,79167 2gvkA 317 5.71e+01 1kdoA 227 5.71e+01 c.37.1.1 68478 2bmfA 451 5.71e+01 1gdeA 389 5.72e+01 c.67.1.1 60456 1otfA 62 5.73e+01 1otfA d.80.1.1 39820 1yb2A 275 5.78e+01 1rf6A 427 5.81e+01 d.68.2.2 97366 2c9wA 169 5.81e+01 3pcgM 238 5.82e+01 3pchM b.3.6.1 22742 1vrvA 101 5.83e+01 1gteA 1025 5.84e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1a53 247 5.88e+01 1a53 c.1.2.4 28564 1qtqA 553 5.88e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1ls1A 295 5.88e+01 a.24.13.1,c.37.1.10 78170,78171 1t0tV 248 5.91e+01 d.58.4.10 106229 2gpyA 233 5.92e+01 1mqoA 227 5.94e+01 d.157.1.1 103846 1z0jA 170 6.04e+01 1ornA 226 6.09e+01 a.96.1.1 87342 1s0yA 76 6.12e+01 d.80.1.1 98314 1mo9A 523 6.14e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1q0pA 223 6.14e+01 c.62.1.1 95507 1mp9A 198 6.17e+01 d.129.1.1,d.129.1.1 91385,91386 1zljA 78 6.23e+01 1x42A 232 6.24e+01 1dcoA 104 6.25e+01 1dcpA d.74.1.1 39680 1p2fA 220 6.26e+01 a.4.6.1,c.23.1.1 87720,87721 1s6cA 183 6.32e+01 a.39.1.5 98594 2bjbA 462 6.32e+01 1wfxA 186 6.35e+01 1vmaA 306 6.38e+01 a.24.13.1,c.37.1.10 108887,108888 1ez0A 510 6.38e+01 1eyyA c.82.1.1 35385 1otjA 283 6.40e+01 b.82.2.5 93517 1h3oA 75 6.41e+01 a.22.1.3 76644 1t7lA 766 6.44e+01 1s8nA 205 6.45e+01 c.23.1.1 105374 1r9kA 172 6.57e+01 a.168.1.1 104869 1ulyA 192 6.59e+01 1r0mA 375 6.61e+01 c.1.11.2,d.54.1.1 104747,104748 1914 232 6.65e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1f8fA 371 6.71e+01 b.35.1.2,c.2.1.1 83246,83247 1zd3A 555 6.78e+01 1wnaA 131 6.82e+01 1k7jA 206 6.82e+01 d.115.1.1 72103 2gqrA 237 6.86e+01 1okiA 210 6.87e+01 b.11.1.1,b.11.1.1 93255,93256 1hxhA 253 6.90e+01 c.2.1.2 76725 1kthA 58 6.96e+01 g.8.1.1 68863 1woqA 267 6.98e+01 c.55.1.10,c.55.1.10 109462,109463 1jnyA 435 6.99e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1b67A 68 7.05e+01 1a7w a.22.1.2 16474 1oaoA 674 7.07e+01 e.26.1.2 86744 1xtyA 120 7.08e+01 1bc5A 269 7.20e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2glzA 153 7.24e+01 1auoA 218 7.28e+01 1auoA c.69.1.14 34716 2cvjA 180 7.36e+01 2gdqA 382 7.37e+01 1wy1A 172 7.38e+01 2a2cA 478 7.47e+01 1i27A 73 7.51e+01 1i27A a.4.5.30 61555 1tu5A 746 7.53e+01 830cA 168 7.54e+01 1ck7A d.92.1.11 40400 1b3uA 588 7.58e+01 1b3uA a.118.1.2 19135 1u04A 771 7.63e+01 b.34.14.1,c.55.3.10 107539,107540 1l0qA 391 7.66e+01 b.1.3.1,b.69.2.3 77644,77645 2d13A 227 7.72e+01 2bzgA 232 7.74e+01 2c1vA 338 7.96e+01 1t1jA 125 7.97e+01 c.137.1.1 106249 1vchA 175 8.00e+01 1z5yE 149 8.02e+01 2bt9A 90 8.09e+01 1ddgA 374 8.10e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1ufmA 84 8.11e+01 a.4.5.47 107816 1gnkA 112 8.13e+01 2pii d.58.5.1 39073 1zsqA 528 8.14e+01 1c0pA 363 8.15e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1wr2A 238 8.21e+01 1n7oA 721 8.26e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1xkyA 301 8.30e+01 1vfjA 116 8.31e+01 1ixcA 294 8.32e+01 a.4.5.37,c.94.1.1 83764,83765 1vhyA 257 8.39e+01 b.122.1.2,c.116.1.5 100714,100715 2hbtA 247 8.39e+01 1gzsB 165 8.39e+01 a.168.1.1 76425 2cujA 108 8.44e+01 1gu2A 124 8.50e+01 a.3.1.1 76348 1r9cA 139 8.51e+01 d.32.1.2 97255 1u7iA 136 8.54e+01 d.32.1.7 107724 1t6nA 220 8.56e+01 c.37.1.19 106576 1okhA 46 8.56e+01 g.13.1.1 93253 1l9vA 317 8.60e+01 d.13.2.1,d.216.1.1 73760,73761 1n12A 138 8.65e+01 b.2.3.2 79779 1m7vA 363 8.67e+01 d.174.1.1 78748 1j2mA 99 8.73e+01 a.165.1.1 84018 1fxlA 167 8.82e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1vplA 256 8.87e+01 2g19A 244 8.91e+01 1wi9A 72 8.98e+01 1mw7A 240 9.00e+01 e.39.1.1 79557