# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 7.63e-14 1vgjA 184 5.11e-02 1ydyA 356 1.03e-01 1uw1A 80 4.11e-01 k.42.1.1 100069 1oz9A 150 5.75e-01 d.92.1.15 93808 1fmcA 255 1.18e+00 1cydA c.2.1.2 29856 1wzcA 249 1.56e+00 1m7bA 184 1.63e+00 c.37.1.8 74572 2b9eA 303 1.77e+00 1v5iB 76 2.51e+00 1omoA 322 2.80e+00 c.2.1.13 104017 1l6rA 227 3.38e+00 c.108.1.10 77768 2ge3A 170 4.00e+00 1j57A 143 4.26e+00 d.221.1.1 77079 1tu5A 746 4.54e+00 1sqgA 429 6.28e+00 a.79.1.3,c.66.1.38 105912,105913 1ta9A 450 6.37e+00 2a5dA 175 6.60e+00 1h8eD 482 6.67e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2ck3D 482 6.75e+00 1iv8A 720 6.90e+00 b.71.1.1,c.1.8.1 76842,76843 2f02A 323 7.32e+00 1xv5A 401 8.30e+00 1qf9A 194 8.76e+00 1zin c.37.1.1 31848 1lkdA 297 9.12e+00 d.32.1.3,d.32.1.3 78059,78060 1r2qA 170 9.90e+00 c.37.1.8 96874 2ae2A 260 1.02e+01 1bdb c.2.1.2 29945 1sr9A 644 1.03e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1qu9A 128 1.11e+01 1qu9A d.79.1.1 39755 1qysA 106 1.17e+01 k.41.1.1 96603 1nmeA 146 1.19e+01 c.17.1.1 85874 1yydA 357 1.19e+01 1af7 274 1.19e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1eyqA 222 1.23e+01 1eypA d.36.1.1 38534 1l8aA 886 1.24e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2f15A 96 1.26e+01 2bkaA 242 1.40e+01 2bmeA 186 1.43e+01 2gqrA 237 1.45e+01 1l7aA 318 1.48e+01 c.69.1.25 77772 1f6bA 198 1.48e+01 c.37.1.8 64986 1pl8A 356 1.48e+01 b.35.1.2,c.2.1.1 94878,94879 1pvgA 418 1.48e+01 d.14.1.3,d.122.1.2 95161,95162 1m5wA 243 1.48e+01 c.1.24.1 84836 1iv3A 152 1.56e+01 d.79.5.1 76828 2fpmA 322 1.57e+01 1gz2A 142 1.58e+01 d.169.1.1 83392 2czdA 208 1.60e+01 1ugjA 141 1.62e+01 b.41.1.3 107826 1r8sA 164 1.65e+01 c.37.1.8 97247 2gjsA 176 1.71e+01 1vpdA 299 1.74e+01 1gyxA 76 1.80e+01 d.80.1.1 76387 1gvdA 52 1.85e+01 a.4.1.3 83338 1vflA 356 1.85e+01 1n7kA 234 1.92e+01 c.1.10.1 85374 1aisA 182 1.94e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1jljA 189 1.94e+01 c.57.1.1 63169 1bc5A 269 1.94e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2a5hA 416 2.20e+01 2bgkA 278 2.22e+01 2axiA 115 2.26e+01 1m1nB 522 2.40e+01 c.92.2.3 78418 1wr2A 238 2.42e+01 2c07A 285 2.43e+01 1t0yA 122 2.44e+01 d.15.1.1 99066 1mxgA 435 2.55e+01 b.71.1.1,c.1.8.1 85193,85194 1rqbA 539 2.71e+01 a.5.7.2,c.1.10.5 105057,105058 1yqgA 263 2.73e+01 1z08A 170 2.74e+01 1vb3A 428 2.77e+01 1dmgA 225 2.80e+01 1dmgA c.22.1.1 31036 2g9iA 249 2.90e+01 1o3yA 166 2.97e+01 c.37.1.8 86618 1t6nA 220 3.16e+01 c.37.1.19 106576 1ja9A 274 3.18e+01 c.2.1.2 62817 1us5A 314 3.25e+01 c.94.1.1 99856 1kqpA 271 3.25e+01 c.26.2.1 72883 1wn2A 121 3.26e+01 2h1rA 299 3.32e+01 1vheA 373 3.45e+01 b.49.3.1,c.56.5.4 100669,100670 1j0dA 341 3.46e+01 c.79.1.1 83902 1vhoA 346 3.56e+01 b.49.3.1,c.56.5.4 100694,100695 2fq3A 104 3.61e+01 1xu9A 286 3.62e+01 2gdjA 264 3.77e+01 1jbiA 100 3.79e+01 d.209.1.1 66481 1m6yA 301 3.86e+01 a.60.13.1,c.66.1.23 78716,78717 1v72A 356 3.87e+01 1mho 88 3.89e+01 1b4cA a.39.1.2 17171 2abqA 306 3.96e+01 1pzgA 331 4.04e+01 c.2.1.5,d.162.1.1 95425,95426 1n0wA 243 4.07e+01 c.37.1.11 79772 1ockA 412 4.09e+01 c.117.1.1 86802 1qd9A 124 4.17e+01 1qu9A d.79.1.1 39758 1uujA 88 4.17e+01 a.221.1.1 108046 1ykdA 398 4.22e+01 1k7jA 206 4.24e+01 d.115.1.1 72103 2a5jA 191 4.35e+01 1ohvA 472 4.38e+01 c.67.1.4 93031 8rucI 123 4.41e+01 1rboC d.73.1.1 39629 2gf9A 189 4.43e+01 1g6sA 427 4.49e+01 1eps d.68.2.2 39584 1w1oA 534 4.59e+01 d.58.32.4,d.145.1.1 109071,109072 1n9lA 109 4.63e+01 d.110.3.6 85468 1twuA 139 4.64e+01 d.32.1.8 107413 1hl9A 449 4.66e+01 b.71.1.3,c.1.8.11 90650,90651 1t0bA 252 4.67e+01 c.23.16.6 106199 1vmbA 140 4.68e+01 1jh6A 189 4.80e+01 d.61.1.1 66707 1bupA 386 4.81e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1rlhA 173 4.84e+01 d.256.1.1 97646 1uslA 170 4.84e+01 c.121.1.1 99871 1mqeA 207 4.85e+01 d.113.1.1 91394 1on0A 158 4.93e+01 d.108.1.1 87095 1aua 296 4.93e+01 1aua a.5.3.1,c.13.1.1 16290,30882 2beiA 170 4.93e+01 1qsmA 152 5.05e+01 1qsmA d.108.1.1 40808 2b5wA 357 5.06e+01 2gq1A 332 5.07e+01 2dbsA 90 5.10e+01 1u55A 188 5.13e+01 d.278.1.1 107677 1hyeA 313 5.23e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1oapA 109 5.38e+01 d.79.7.1 92706 2absA 383 5.41e+01 1vcvA 226 5.55e+01 2ftxA 90 5.65e+01 1uyrA 737 5.80e+01 c.14.1.4,c.14.1.4 100188,100189 2ftbA 125 5.85e+01 1w2xA 758 5.88e+01 c.14.1.4,c.14.1.4 109134,109135 1seiA 130 5.91e+01 1seiA d.140.1.1 41463 2cx1A 187 6.05e+01 5csmA 256 6.07e+01 5csmA a.130.1.2 19494 1u0kA 288 6.09e+01 d.21.1.2,d.21.1.2 107547,107548 1ursA 402 6.09e+01 c.94.1.1 99833 2c9wA 169 6.23e+01 1ta3A 274 6.35e+01 c.1.8.5 106731 1wb4A 297 6.43e+01 1vkcA 158 6.46e+01 1vl4A 447 6.53e+01 d.283.1.1 108718 1t6t1 118 6.55e+01 1lfpA 249 6.63e+01 e.39.1.1 73885 1gd0A 122 6.73e+01 1dptA d.80.1.3 39834 1jetA 517 6.82e+01 1jevA c.94.1.1 35718 1o7nA 449 6.83e+01 b.33.1.2,d.129.3.3 81162,81163 1xviA 275 6.88e+01 2fafA 608 6.90e+01 1q7sA 117 6.98e+01 c.131.1.1 96055 1ro2A 216 7.06e+01 d.264.1.2 97665 1h65A 270 7.10e+01 c.37.1.8 65640 1fzqA 181 7.10e+01 1hurA c.37.1.8 32060 1ixkA 315 7.19e+01 c.66.1.38 90716 2ezvA 269 7.38e+01 1wxiA 275 7.44e+01 1guzA 310 7.51e+01 c.2.1.5,d.162.1.1 65586,65587 1ztsA 139 7.51e+01 1q8bA 105 7.54e+01 d.58.4.6 96201 4tmkA 213 7.61e+01 5tmpA c.37.1.1 31930 1fseA 74 7.64e+01 1fseA a.4.6.2 60000 2cy2A 174 7.71e+01 1wdvA 152 7.82e+01 1nf3A 195 7.84e+01 c.37.1.8 85594 1a73A 163 7.99e+01 1a73A d.4.1.3 37145 2g2kA 170 7.99e+01 1txuA 273 8.08e+01 a.222.1.1 107439 4eugA 229 8.16e+01 3eugA c.18.1.1 31019 1thg 544 8.19e+01 1thg c.69.1.17 34763 1s6cA 183 8.32e+01 a.39.1.5 98594 1y74A 57 8.36e+01 1ixcA 294 8.41e+01 a.4.5.37,c.94.1.1 83764,83765 1byyA 53 8.47e+01 j.12.1.1 46147 1cczA 171 8.47e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1wvqA 167 8.59e+01 1sw5A 275 8.65e+01 c.94.1.1 106069 1afwA 393 8.67e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1nh2B 53 8.73e+01 a.32.1.1 91874 2afbA 351 8.79e+01 1zlmA 58 8.80e+01 2fldA 165 8.86e+01 1fjgL 135 8.87e+01 1fjfL b.40.4.5 25346 2b2nA 344 8.95e+01