# List of top-scoring protein chains for T0377.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ivyA 101 1.06e-12 1zpwX 90 3.80e-11 1mngA 203 3.58e+00 1avmA a.2.11.1,d.44.1.1 15776,38701 1uw1A 80 4.02e+00 k.42.1.1 100069 1vgjA 184 6.11e+00 1ydyA 356 6.92e+00 1t8qA 336 6.94e+00 c.1.18.3 106669 2cr6A 115 8.22e+00 1varA 198 8.45e+00 1avmA a.2.11.1,d.44.1.1 15756,38715 1szxA 198 1.09e+01 a.2.11.1,d.44.1.1 99049,99050 1pl4A 198 1.09e+01 a.2.11.1,d.44.1.1 94854,94855 1pm9A 198 1.10e+01 a.2.11.1,d.44.1.1 94897,94898 1m7bA 184 1.11e+01 c.37.1.8 74572 1em1A 198 1.13e+01 1avmA a.2.11.1,d.44.1.1 15752,38711 1zspA 198 1.15e+01 1zteA 198 1.15e+01 1xdcA 198 1.15e+01 1zuqA 198 1.15e+01 2adpA 198 1.15e+01 2gdsA 198 1.16e+01 1n0jA 199 1.16e+01 a.2.11.1,d.44.1.1 79740,79741 1luwA 198 1.16e+01 a.2.11.1,d.44.1.1 74267,74268 1xilA 198 1.17e+01 1ja8A 198 1.18e+01 1avmA a.2.11.1,d.44.1.1 62813,62814 1n0nA 199 1.19e+01 a.2.11.1,d.44.1.1 79750,79751 1qnmA 198 1.20e+01 1avmA a.2.11.1,d.44.1.1 15754,38713 1gwnA 205 1.25e+01 c.37.1.8 70672 1g16A 170 1.29e+01 1ctqA c.37.1.8 32022 1i35A 95 1.76e+01 d.15.1.5 66017 1k8rB 110 1.82e+01 d.15.1.5 72180 2folA 191 1.86e+01 1d5cA 162 2.00e+01 1ctqA c.37.1.8 32021 2gq1A 332 2.24e+01 1r2qA 170 2.32e+01 c.37.1.8 96874 1n6rA 170 2.33e+01 c.37.1.8 80211 1n6kA 170 2.34e+01 c.37.1.8 80199 1tu4A 171 2.35e+01 1n6nA 170 2.38e+01 c.37.1.8 80201 1uujA 88 2.39e+01 a.221.1.1 108046 2fu5C 183 2.46e+01 1n6oA 170 2.48e+01 c.37.1.8 80202 1q5qH 235 2.49e+01 d.153.1.4 95911 1n6pA 170 2.51e+01 c.37.1.8 80203 1z0jA 170 2.54e+01 1yvdA 169 2.57e+01 2cyeA 133 2.59e+01 1sxvA 172 2.66e+01 1mw7A 240 2.77e+01 e.39.1.1 79557 2bo4A 397 2.86e+01 2heiA 179 2.90e+01 1yznA 185 3.00e+01 1q5rH 294 3.09e+01 d.153.1.4 95925 2bcgY 206 3.10e+01 1ukvY 206 3.10e+01 c.37.1.8 107918 1ny1A 240 3.13e+01 c.6.2.3 86395 1mseC 105 3.15e+01 1a5j a.4.1.3,a.4.1.3 16039,16040 1gv2A 105 3.17e+01 a.4.1.3,a.4.1.3 83335,83336 1w17A 263 3.18e+01 1w1b1 257 3.18e+01 1ug2A 95 3.44e+01 a.4.1.3 107823 1orqC 223 3.51e+01 f.14.1.1 87348 2b2nA 344 3.66e+01 1z08A 170 3.74e+01 1vqoJ 145 3.76e+01 1z0iA 170 3.81e+01 1d3e2 252 3.82e+01 1k2wA 256 3.93e+01 c.2.1.2 90927 1c8m2 252 3.94e+01 1aym2 1yztA 184 4.11e+01 1aym2 261 4.24e+01 1aym2 2a0lA 241 4.29e+01 2agjL 215 4.41e+01 1odsA 318 4.44e+01 c.69.1.25 86877 1udh 244 4.48e+01 3eugA c.18.1.1 31015 1oz9A 150 4.67e+01 d.92.1.15 93808 1odtC 318 4.71e+01 c.69.1.25 86885 1p1eA 101 4.74e+01 b.36.1.1 93898 1huqA 164 4.78e+01 1byuA c.37.1.8 32020 1z07A 166 4.83e+01 1l7aA 318 4.84e+01 c.69.1.25 77772 2b9cA 147 4.92e+01 1z0dA 167 4.98e+01 1kyqA 274 5.01e+01 c.2.1.11,e.37.1.1 73281,73282 2cjpA 328 5.09e+01 1k1sA 354 5.21e+01 d.240.1.1,e.8.1.7 90386,90387 1h89C 159 5.25e+01 a.4.1.3,a.4.1.3,a.4.1.3 65726,65727,65728 2c53A 244 5.55e+01 1v5qA 122 5.78e+01 b.36.1.1 108383 1gv5A 52 5.81e+01 a.4.1.3 83337 1vf8A 377 6.25e+01 1bihA 395 6.34e+01 1bihA b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1ce7B 255 6.50e+01 1abrB b.42.2.1,b.42.2.1 25565,25566 1rwrA 301 6.54e+01 b.80.1.11 97990 2ge3A 170 6.98e+01 1ta9A 450 7.05e+01 1yewA 382 7.05e+01 1z6xA 180 7.08e+01 1rpmA 278 7.19e+01 2shpA c.45.1.2 32679 1wk0A 137 7.36e+01 1j3tA 74 7.50e+01 b.34.2.1 103839 1xmqD 209 7.51e+01 1n32D 208 7.51e+01 d.66.1.2 79872 2ew0A 192 7.59e+01 1cp2A 269 7.66e+01 1cp2A c.37.1.10 32269 1tw4A 125 7.77e+01 2booA 247 7.79e+01 1xkyA 301 7.90e+01 1t0yA 122 7.91e+01 d.15.1.1 99066 1i3jA 116 7.92e+01 1i3jA d.285.1.1 61594 3rabA 169 8.12e+01 1ctqA c.37.1.8 32018 2cknA 95 8.13e+01 1x9bA 53 8.17e+01 1vyhC 410 8.18e+01 1b6sA 355 8.18e+01 1b6rA b.84.2.1,c.30.1.1,d.142.1.2 28242,31649,41494 1v7zA 260 8.41e+01 c.125.1.1 100488 1fjgD 209 8.50e+01 1c05A d.66.1.2 39553 2b9eA 303 8.55e+01 1t5rA 284 8.69e+01 f.6.1.1 106465 1x6fA 88 8.70e+01 1z5xE 310 8.97e+01