# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zpwX 90 1.35e-09 1iv8A 720 2.81e+00 b.71.1.1,c.1.8.1 76842,76843 1oz9A 150 3.21e+00 d.92.1.15 93808 1vl4A 447 3.65e+00 d.283.1.1 108718 1ta9A 450 3.93e+00 1mngA 203 4.60e+00 1avmA a.2.11.1,d.44.1.1 15776,38701 1dmgA 225 5.84e+00 1dmgA c.22.1.1 31036 1omoA 322 6.60e+00 c.2.1.13 104017 1gz2A 142 6.73e+00 d.169.1.1 83392 1vgjA 184 6.87e+00 1vllA 334 7.03e+00 c.2.1.13 108834 1sdsA 117 7.31e+00 d.79.3.1 105439 2mspA 126 8.66e+00 1mspA b.1.11.2 22335 1vdxA 184 8.83e+00 1m7bA 184 9.04e+00 c.37.1.8 74572 1vljA 407 9.74e+00 e.22.1.2 108832 1n0nA 199 9.85e+00 a.2.11.1,d.44.1.1 79750,79751 1xbiA 120 1.02e+01 1ny1A 240 1.10e+01 c.6.2.3 86395 1qysA 106 1.15e+01 k.41.1.1 96603 1kq3A 376 1.19e+01 e.22.1.2 68790 1ap6A 198 1.24e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 1td5A 202 1.26e+01 d.110.2.2 106767 1sqgA 429 1.30e+01 a.79.1.3,c.66.1.38 105912,105913 1ydwA 362 1.31e+01 1pl4A 198 1.31e+01 a.2.11.1,d.44.1.1 94854,94855 2ge3A 170 1.60e+01 1z9lA 128 1.62e+01 1k8rB 110 1.65e+01 d.15.1.5 72180 1mspA 126 1.69e+01 1mspA b.1.11.2 22333 2c07A 285 1.77e+01 1vkmA 297 1.77e+01 c.138.1.1 108670 1ho1A 242 1.78e+01 1ho1A c.1.24.1 61097 2cblA 305 1.78e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1yvhA 329 1.83e+01 1u1hA 765 2.01e+01 c.1.22.2,c.1.22.2 107580,107581 1r2qA 170 2.04e+01 c.37.1.8 96874 1mgtA 174 2.05e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1wr2A 238 2.07e+01 1m5wA 243 2.07e+01 c.1.24.1 84836 1o0uA 429 2.12e+01 c.118.1.1 80743 1t8qA 336 2.12e+01 c.1.18.3 106669 2b8nA 429 2.33e+01 2ae2A 260 2.38e+01 1bdb c.2.1.2 29945 1udh 244 2.39e+01 3eugA c.18.1.1 31015 1sxvA 172 2.40e+01 1uw1A 80 2.51e+01 k.42.1.1 100069 1z08A 170 2.61e+01 1fmcA 255 2.85e+01 1cydA c.2.1.2 29856 1euvA 221 2.93e+01 1euvA d.3.1.7 37133 1han 297 2.95e+01 1han d.32.1.3,d.32.1.3 38506,38507 1fjgM 126 2.95e+01 1fjfM a.156.1.1 16293 1k2eA 156 2.96e+01 d.113.1.1 72010 1qusA 322 2.97e+01 1ltm d.2.1.6 36991 1nwbA 124 3.06e+01 b.124.1.1 86296 1vjlA 164 3.06e+01 d.257.1.1 100822 1t8kA 77 3.11e+01 a.28.1.1 106666 1t0yA 122 3.13e+01 d.15.1.1 99066 1ydyA 356 3.18e+01 1fo1A 271 3.24e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1sw5A 275 3.28e+01 c.94.1.1 106069 2fq3A 104 3.30e+01 1jmsA 381 3.30e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1l0iA 78 3.39e+01 a.28.1.1 77643 1i7qA 519 3.45e+01 1qdlA d.161.1.1 61901 1aisA 182 3.52e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1lkdA 297 3.53e+01 d.32.1.3,d.32.1.3 78059,78060 1mho 88 3.54e+01 1b4cA a.39.1.2 17171 1nu7D 282 3.72e+01 a.8.6.1,a.8.6.1 92191,92192 1wb4A 297 3.73e+01 2a5jA 191 3.84e+01 1gklA 297 3.90e+01 c.69.1.2 65250 1h4vB 421 3.91e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1ukxA 137 4.10e+01 d.20.1.3 107919 1u1jA 765 4.11e+01 c.1.22.2,c.1.22.2 107590,107591 2bo4A 397 4.11e+01 1gvdA 52 4.18e+01 a.4.1.3 83338 1sw5B 275 4.28e+01 c.94.1.1 106070 1z5hA 780 4.39e+01 1aym2 261 4.40e+01 1aym2 1y14A 187 4.45e+01 2ebn 289 4.64e+01 2ebn c.1.8.5 28990 1d1gA 168 4.71e+01 1d1gA c.71.1.1 34889 1zxq 192 4.72e+01 1zxq b.1.1.3,b.1.1.4 21657,21693 1dqnA 230 4.78e+01 1dqnA c.61.1.1 34067 1dceA 567 4.91e+01 1dceA a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1v5iB 76 4.92e+01 1t7lA 766 4.95e+01 1j3kA 280 4.97e+01 c.71.1.1 84070 1qsgA 265 4.98e+01 1eny c.2.1.2 29935 1xwoA 465 5.26e+01 1f80D 81 5.29e+01 1acp a.28.1.1 59686 1ihbA 162 5.34e+01 1bd8 d.211.1.1 19161 1xqiA 195 5.39e+01 1jj2I 145 5.46e+01 1ffkG c.21.1.1 63094 1y5iB 512 5.52e+01 1on0A 158 5.70e+01 d.108.1.1 87095 1va0A 239 5.70e+01 1dqpA 230 5.71e+01 1dqnA c.61.1.1 34069 1q16B 512 6.13e+01 d.58.1.5 95548 2fywA 267 6.13e+01 1qbjA 81 6.14e+01 1qbjA a.4.5.19 16155 1uu1A 335 6.21e+01 c.67.1.1 99993 2bcgY 206 6.28e+01 1ukvY 206 6.33e+01 c.37.1.8 107918 2bs6A 90 6.41e+01 1pz4A 116 6.47e+01 d.106.1.1 95400 1qf9A 194 6.50e+01 1zin c.37.1.1 31848 2f3yA 148 6.52e+01 1w9hA 427 6.56e+01 1n12A 138 6.60e+01 b.2.3.2 79779 1yruB 74 6.60e+01 2gf9A 189 6.61e+01 1akz 223 6.65e+01 3eugA c.18.1.1 31007 2a1dD 329 6.81e+01 1g2aA 168 6.88e+01 d.167.1.1 65109 1udxA 416 6.91e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1a8y 367 6.98e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1g4yR 148 6.99e+01 1cll a.39.1.5 60252 1gowA 489 7.00e+01 1qvbA c.1.8.4 28981 1hl2A 297 7.01e+01 c.1.10.1 83581 2b9eA 303 7.03e+01 5ukdA 194 7.15e+01 1zin c.37.1.1 31851 1z8sA 146 7.16e+01 1cxpC 466 7.18e+01 1mhlC 2gpyA 233 7.19e+01 1ga8A 311 7.20e+01 1ga8A c.68.1.4 34516 1aua 296 7.41e+01 1aua a.5.3.1,c.13.1.1 16290,30882 2bt9A 90 7.46e+01 1d2vC 466 7.46e+01 1mhlC 1xe0A 114 7.47e+01 1iv3A 152 7.58e+01 d.79.5.1 76828 1hy0A 466 7.86e+01 1auwA a.127.1.1 61392 1ggzA 148 8.02e+01 a.39.1.5 70176 1vl8A 267 8.02e+01 c.2.1.2 108733 1huqA 164 8.09e+01 1byuA c.37.1.8 32020 3dfr 162 8.09e+01 3dfr c.71.1.1 34880 1zip 217 8.22e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1ej5A 107 8.31e+01 1ej5A a.68.1.1 18268 1jq5A 370 8.37e+01 e.22.1.2 67084 2c1xA 456 8.44e+01 1nhkL 144 8.44e+01 1npk d.58.6.1 39142 1ss9A 311 8.46e+01 c.68.1.4 105978 1k7wA 468 8.48e+01 a.127.1.1 72130 1vr6A 350 8.50e+01 1ea9C 583 8.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1xbtA 193 8.69e+01 1xxqA 161 8.70e+01 2cdnA 201 8.85e+01 1xeoA 168 8.88e+01 2b5rC 165 8.91e+01 2bnuB 241 8.93e+01 1dzlA 505 8.96e+01 1dzlA b.121.6.1 23586 1o4sA 389 8.99e+01 c.67.1.1 86620