Best Alignments for T0376

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xkyA/T0376-1xkyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xkyA/T0376-1xkyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8741e-339.17e-203
1o5kA/T0376-1o5kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o5kA/T0376-1o5kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4024e-331.21e-194 c.1.10.1
1yxcA/T0376-1yxcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yxcA/T0376-1yxcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8417e-326.03e-191
2a6nA/T0376-2a6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a6nA/T0376-2a6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5070e-221.59e-190
2a6lA/T0376-2a6lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a6lA/T0376-2a6lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5104e-224.92e-190
1xxxA/T0376-1xxxA-t04-global-adpstyle1.a2m 1xxxA/T0376-1xxxA-t04-global-adpstyle1.al 3.1264e-053.50e-91
1y0eA/T0376-1y0eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y0eA/T0376-1y0eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4510e-042.32e-37
1w8sA/T0376-1w8sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w8sA/T0376-1w8sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0994e-034.01e-38
1xg4A/T0376-1xg4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xg4A/T0376-1xg4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5017e-031.42e-41
1thfD/T0376-1thfD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1thfD/T0376-1thfD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5855e-033.77e-33 1thfD c.1.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001