# List of top-scoring protein chains for T0374.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yr0A 175 1.70e-16 2fe7A 166 2.26e-16 1yvoA 172 6.74e-16 2bl1A 172 6.93e-16 2ge3A 170 5.20e-14 2beiA 170 1.66e-13 1vhsA 175 1.28e-12 d.108.1.1 100698 2ae6A 166 4.10e-12 1z4eA 153 4.43e-12 2euiA 153 7.41e-12 2b3uA 171 1.25e-11 2b5gB 171 1.33e-11 2g3tA 179 1.53e-11 2b5gA 171 1.55e-11 2fxfA 170 1.56e-11 2cy2A 174 1.61e-11 1u6mA 199 1.99e-11 1tiqA 180 2.28e-11 d.108.1.1 107010 1qsoA 149 3.00e-11 1qsmA d.108.1.1 40812 1qsmA 152 3.48e-11 1qsmA d.108.1.1 40808 1yx0A 159 5.16e-11 1wwzA 159 8.41e-11 1y9kA 157 1.04e-10 1s3zA 165 1.77e-10 d.108.1.1 105250 2fl4A 149 4.92e-10 1mk4A 157 1.12e-09 d.108.1.1 84979 2fiwA 172 1.65e-09 2fiaA 162 1.72e-09 1gheA 177 2.27e-09 d.108.1.1 76222 1vkcA 158 3.12e-09 1on0A 158 4.52e-09 d.108.1.1 87095 1ufhA 180 4.81e-09 d.108.1.1 88485 2aj6A 159 5.66e-09 1y9wA 140 1.08e-08 1q2yA 140 1.32e-08 d.108.1.1 95655 1i21A 159 1.32e-08 1i21A d.108.1.1 61549 1i12A 160 1.32e-08 1i21A d.108.1.1 61515 1i1dA 161 1.32e-08 1i21A d.108.1.1 61526 2g3aA 152 1.71e-08 2ganA 190 3.06e-08 1yvkA 163 3.32e-08 2c27A 315 4.18e-08 1p0hA 318 4.18e-08 d.108.1.1 93866 2bswA 146 4.76e-08 2atrA 138 5.20e-08 1bo4A 168 8.08e-08 1bo4A d.108.1.1 40798 1xebA 150 1.46e-07 1cjwA 166 2.36e-07 1cjwA d.108.1.1 40818 1b6bA 174 2.47e-07 1cjwA d.108.1.1 40819 1ib1E 200 3.74e-07 1cjwA d.108.1.1 62137 1kuxA 207 3.77e-07 d.108.1.1 73021 1nslA 184 5.32e-07 d.108.1.1 86137 1b87A 181 7.87e-07 1b87A d.108.1.1 40797 2a4nA 182 7.87e-07 1n71A 180 7.88e-07 d.108.1.1 85370 1l0cA 207 1.15e-06 d.108.1.1 73393 1z9uA 179 1.85e-06 1s7kA 182 1.86e-06 1s7fA 199 2.07e-06 1yreA 197 3.70e-06 1z4rA 168 6.77e-06 1cm0A 168 8.09e-06 1yghA d.108.1.1 40800 1qstA 160 1.58e-05 1yghA d.108.1.1 40804 1qsrA 162 1.63e-05 1yghA d.108.1.1 40805 1m1dA 163 1.63e-05 d.108.1.1 78397 5gcnA 166 1.66e-05 1yghA d.108.1.1 40807 1y7rA 133 1.76e-05 2fckA 181 2.23e-05 1sqhA 312 2.11e-04 d.108.1.5 98966 1yghA 164 2.19e-04 1yghA d.108.1.1 40802 1r57A 102 4.50e-04 d.108.1.1 97080 1m4iA 181 1.71e-03 d.108.1.1 74457 1mj9A 278 1.83e-02 d.108.1.1 79190 2fsrA 195 2.14e-02 1rxtA 496 2.16e-02 1mjbA 278 2.46e-02 d.108.1.1 79192 1fy7A 278 2.48e-02 1fy7A d.108.1.1 40817 1mjaA 278 2.60e-02 d.108.1.1 79191 1iykA 392 3.76e-02 d.108.1.2,d.108.1.2 76958,76959 2givA 295 7.78e-02 2d4oA 141 3.02e-01 2d4pA 141 3.14e-01 1bob 320 8.14e-01 1bob d.108.1.1 40816 1xmtA 103 9.87e-01 2gdbA 103 9.88e-01 1yleA 342 2.54e+00 1zy9A 564 2.82e+00 1iicA 422 2.94e+00 1nmtA d.108.1.2,d.108.1.2 62422,62423 1zo0A 126 4.07e+00 1h4yA 117 1.19e+01 1auz c.13.2.1 60628 1o50A 157 1.45e+01 d.37.1.1,d.37.1.1 92478,92479 1yk3A 210 1.68e+01 1j0sA 157 1.72e+01 b.42.1.2 90747 2g39A 497 1.85e+01 1l8tA 263 1.87e+01 d.144.1.6 73702 1j7lA 264 1.87e+01 d.144.1.6 62697 1d3yA 301 1.92e+01 1d3yA e.12.1.1 43252 1ux4A 410 1.95e+01 a.207.1.1 100142 2bkkA 264 2.00e+01 2aboA 136 2.18e+01 1ux5A 411 2.24e+01 a.207.1.1 100144 1pvmA 184 2.26e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1mifA 115 2.32e+01 1dptA d.80.1.3 39852 2gfaA 119 2.33e+01 1y64B 443 2.36e+01 1x8iA 227 2.42e+01 1f7lA 121 2.42e+01 1f7lA d.150.1.2 59666 1x8hA 228 2.43e+01 1x6vA 630 2.44e+01 1f7tA 122 2.45e+01 1f7lA d.150.1.2 59667 2cbnA 306 2.55e+01 1x8gA 227 3.01e+01 1to6A 371 3.08e+01 c.141.1.1 107170 1f80A 120 3.10e+01 1f7lA d.150.1.2 59683 1i94H 138 3.22e+01 1seiA d.140.1.1 61999 1svjA 156 3.33e+01 d.220.1.1 106049 2as9A 210 3.33e+01 1o58A 303 3.37e+01 c.79.1.1 92491 1cgqA 115 3.81e+01 1dptA d.80.1.3 39843 1gifA 115 3.85e+01 1dptA d.80.1.3 39837 1ljtA 114 3.86e+01 d.80.1.3 78053 1s4iA 175 3.86e+01 1p1gA 114 3.87e+01 1dptA d.80.1.3 39849 1i8kA 107 3.90e+01 b.1.1.1 71130 1xtlA 175 4.04e+01 1gd0A 122 4.08e+01 1dptA d.80.1.3 39834 1eudA 311 4.10e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 2fp4A 305 4.10e+01 1xi5J 114 4.11e+01 1vrdA 494 4.24e+01 1eysH 259 4.25e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1xtmA 175 4.28e+01 2btmA 252 4.39e+01 1amk c.1.1.1 28511 1an7A 136 4.42e+01 1seiA d.140.1.1 41465 1eiwA 111 4.44e+01 1eiwA c.23.3.1 31130 1fjgH 138 4.46e+01 1seiA d.140.1.1 41468 1tuoA 464 4.49e+01 1h4xA 117 4.60e+01 1auz c.13.2.1 60626 1r8oA 96 4.81e+01 b.42.4.1 104852 1t4yA 105 4.85e+01 2fgyA 542 5.00e+01 2fctA 313 5.08e+01 1btmA 252 5.09e+01 1amk c.1.1.1 28513 1vicA 262 5.17e+01 c.68.1.13 100756 2bdrA 175 5.18e+01 1xtoA 311 5.26e+01 1ak6 174 5.34e+01 1cof d.109.1.2 40865 1oi6A 205 5.78e+01 b.82.1.1 103940 1cqsA 131 5.96e+01 d.17.4.3 83165 1t4lB 90 6.13e+01 d.50.1.1 106423 1n62C 288 6.15e+01 d.87.2.1,d.145.1.3 80094,80095 1zxiC 288 6.16e+01 1ogzA 125 6.20e+01 d.17.4.3 92976 1t4oA 117 6.24e+01 d.50.1.1 106425 2b32A 131 6.25e+01 2cpyA 114 6.29e+01 1nz6A 101 6.41e+01 a.2.3.1 86441 1c7hA 131 6.53e+01 1opy d.17.4.3 38117 1v4xA 144 6.58e+01 a.1.1.2 108363 1bl0A 129 6.72e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1ne9A 335 6.86e+01 d.108.1.4,d.108.1.4 91839,91840 1c5kA 439 6.89e+01 1crzA b.68.4.1,c.51.2.1 27630,33212 1xs9A 132 6.90e+01 1gs3A 131 6.92e+01 d.17.4.3 76327 1ohoA 131 6.93e+01 2gqfA 401 7.00e+01 1w01A 131 7.02e+01 d.17.4.3 108979 1n4cA 182 7.03e+01 a.2.3.1 91617 1w6yA 131 7.13e+01 1w00A 131 7.20e+01 1yyaA 250 7.25e+01 1vzzA 131 7.29e+01 d.17.4.3 108977 1yueA 427 7.32e+01 1dmmA 131 7.36e+01 1opy d.17.4.3 38114 1xe4A 335 7.45e+01 1wuuA 399 7.56e+01 1oh0A 131 7.57e+01 d.17.4.3 87004 1dmnA 131 7.64e+01 1opy d.17.4.3 38115 1dmqA 131 7.65e+01 1opy d.17.4.3 38116 2bhmA 164 7.78e+01 2fbyA 205 7.91e+01 1w02A 131 7.98e+01 d.17.4.3 108981 2atzA 180 8.07e+01 1u3nA 162 8.28e+01 1q3iA 214 8.35e+01 d.220.1.1 104524 1ea2A 131 8.38e+01 d.17.4.3 64860 1g652 196 8.49e+01 1e97A 131 8.51e+01 d.17.4.3 64803 1grp 416 8.61e+01 1iso c.77.1.1 35077 1rypH 205 8.61e+01 d.153.1.4 41876 1cw4A 416 8.64e+01 1iso c.77.1.1 35068 1gro 416 8.65e+01 1iso c.77.1.1 35079 1ebdA 455 8.81e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1hx8A 299 8.85e+01 1hg5A a.7.8.2,a.118.9.3 90362,90363 1ml4A 308 8.85e+01 c.78.1.1,c.78.1.1 79255,79256