# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ge3A 170 2.39e-22 1yvoA 172 8.40e-22 1vhsA 175 3.64e-21 d.108.1.1 100698 2cy2A 174 1.34e-19 1tiqA 180 1.77e-19 d.108.1.1 107010 1wwzA 159 2.04e-18 2ae6A 166 4.60e-18 2fckA 181 1.26e-17 1z4eA 153 2.39e-17 1s7kA 182 2.96e-17 2fe7A 166 7.19e-17 2beiA 170 7.50e-17 1yreA 197 8.24e-17 1s3zA 165 3.21e-16 d.108.1.1 105250 1gheA 177 9.08e-16 d.108.1.1 76222 1yx0A 159 1.07e-14 2b5gA 171 1.32e-14 1n71A 180 1.78e-14 d.108.1.1 85370 1i12A 160 1.90e-14 1i21A d.108.1.1 61515 1mk4A 157 2.93e-14 d.108.1.1 84979 1cjwA 166 3.25e-14 1cjwA d.108.1.1 40818 2bswA 146 3.38e-14 1qsmA 152 4.68e-14 1qsmA d.108.1.1 40808 1on0A 158 5.09e-14 d.108.1.1 87095 1qstA 160 6.14e-14 1yghA d.108.1.1 40804 2fsrA 195 1.02e-13 1vkcA 158 1.86e-13 1q2yA 140 3.11e-13 d.108.1.1 95655 2c27A 315 4.09e-13 1p0hA 318 4.53e-13 d.108.1.1 93866 1z4rA 168 1.41e-12 2fl4A 149 4.87e-12 1xebA 150 7.98e-12 2atrA 138 1.40e-11 1bo4A 168 3.36e-11 1bo4A d.108.1.1 40798 2ganA 190 5.20e-10 1y7rA 133 1.64e-09 2g3aA 152 5.59e-09 1y9wA 140 9.39e-09 1m4iA 181 1.51e-08 d.108.1.1 74457 2aj6A 159 1.83e-08 1yk3A 210 1.45e-07 1sqhA 312 2.23e-07 d.108.1.5 98966 2d4pA 141 5.46e-06 1bob 320 3.49e-05 1bob d.108.1.1 40816 1ro5A 201 8.64e-05 d.108.1.3 105023 1iicA 422 2.49e-03 1nmtA d.108.1.2,d.108.1.2 62422,62423 1fy7A 278 2.65e-03 1fy7A d.108.1.1 40817 2givA 295 7.33e-03 1yleA 342 1.44e-02 1xmtA 103 5.73e-02 1ne9A 335 2.04e-01 d.108.1.4,d.108.1.4 91839,91840 1lrzA 426 3.66e-01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1pbjA 125 4.57e-01 d.37.1.1,d.37.1.1 94414,94415 2f9zC 159 6.70e-01 1xttA 216 7.70e-01 1o50A 157 1.37e+00 d.37.1.1,d.37.1.1 92478,92479 1kzfA 230 1.37e+00 d.108.1.3 73354 1vicA 262 1.64e+00 c.68.1.13 100756 1zo0A 126 1.84e+00 1hdoA 206 1.99e+00 1he2A c.2.1.2 60965 1fjgK 129 2.75e+00 1fjfK c.55.4.1 33733 1pjxA 314 2.84e+00 b.68.6.1 104167 1lh0A 213 2.85e+00 c.61.1.1 73896 1o0xA 262 2.86e+00 d.127.1.1 80755 1yg9A 330 3.51e+00 1aisA 182 3.62e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1ml4A 308 3.83e+00 c.78.1.1,c.78.1.1 79255,79256 1dd9A 338 4.00e+00 1dd9A e.13.1.1 43254 1lvwA 295 4.37e+00 c.68.1.6 84723 1pvmA 184 4.55e+00 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1o98A 511 4.95e+00 c.105.1.1,c.76.1.3 86684,86685 1y81A 138 5.27e+00 1oh0A 131 5.56e+00 d.17.4.3 87004 1y4tA 322 5.66e+00 1xnzA 264 5.70e+00 2essA 248 5.77e+00 1zbpA 273 6.66e+00 1yeyA 444 6.82e+00 1yw5A 177 7.00e+00 1nkiA 135 7.35e+00 d.32.1.2 91941 2ggcA 263 7.87e+00 1l1qA 186 8.41e+00 c.61.1.1 77653 1i9zA 347 8.72e+00 1i9yA d.151.1.2 62102 1a7tA 232 8.74e+00 1a7tA d.157.1.1 42041 2b18A 164 8.76e+00 1bu8A 452 9.16e+00 1gpl b.12.1.2,c.69.1.19 23647,34795 1i8kA 107 9.25e+00 b.1.1.1 71130 2arhA 203 9.45e+00 1h1yA 228 9.57e+00 c.1.2.2 76506 1ju3A 583 1.07e+01 b.18.1.13,c.69.1.21 67300,67301 1x8hA 228 1.11e+01 1wrdA 103 1.12e+01 2aeuA 374 1.12e+01 1mo9A 523 1.13e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1xcbA 211 1.15e+01 a.4.5.38,c.2.1.12 109552,109553 1w5tA 412 1.15e+01 1wwrA 171 1.15e+01 1ornA 226 1.16e+01 a.96.1.1 87342 1zy9A 564 1.17e+01 1tyv 542 1.17e+01 1tyv b.80.1.6 28038 1x8gA 227 1.24e+01 2h58A 330 1.25e+01 1y0bA 197 1.26e+01 1tuoA 464 1.29e+01 1odfA 290 1.30e+01 c.37.1.6 92782 1jsmA 325 1.31e+01 b.19.1.2 63264 1r2zA 274 1.32e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2aboA 136 1.36e+01 1i0vA 104 1.36e+01 9rnt d.1.1.4 36054 1pu1A 94 1.38e+01 d.266.1.1 104307 2fbyA 205 1.39e+01 1e8gA 560 1.41e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1lkdA 297 1.41e+01 d.32.1.3,d.32.1.3 78059,78060 1te2A 226 1.46e+01 c.108.1.6 106792 1rypH 205 1.46e+01 d.153.1.4 41876 1qnxA 209 1.47e+01 1qnxA d.111.1.1 40914 2c1iA 431 1.51e+01 1cqxA 403 1.52e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 7ahlA 293 1.57e+01 7ahlA f.6.1.1 43812 1vpqA 273 1.58e+01 1yr2A 741 1.68e+01 1jkmB 361 1.69e+01 1jkmA c.69.1.2 34634 1zyoA 191 1.71e+01 2hrvA 142 1.72e+01 2hrvA b.47.1.4 26429 1z84A 351 1.72e+01 2fflA 756 1.80e+01 1v5dA 386 1.81e+01 1ztuA 341 1.84e+01 1nmeA 146 1.87e+01 c.17.1.1 85874 1jyeA 349 1.88e+01 c.93.1.1 67455 2byoA 207 1.89e+01 1jhsA 188 1.91e+01 d.107.1.1 84172 1yzfA 195 1.92e+01 1xipA 388 1.92e+01 1m4jA 142 1.96e+01 d.109.1.2 78602 1thfD 253 1.99e+01 1thfD c.1.2.1 28535 1d3yA 301 2.00e+01 1d3yA e.12.1.1 43252 1zp4A 304 2.00e+01 1wv9A 94 2.00e+01 1bupA 386 2.00e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1rxyA 253 2.01e+01 c.56.2.1 98065 1ohpA 125 2.04e+01 1yqtA 538 2.05e+01 1yhvA 297 2.05e+01 1qxyA 252 2.12e+01 d.127.1.1 96565 2d29A 387 2.15e+01 2b1xA 470 2.19e+01 1r8nA 185 2.19e+01 b.42.4.1 104851 1i5pA 633 2.19e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1d3gA 367 2.20e+01 1d3gA c.1.4.1 28600 1w44A 331 2.21e+01 1wkqA 164 2.22e+01 c.97.1.2 109393 1y0yA 353 2.24e+01 1qysA 106 2.26e+01 k.41.1.1 96603 1ss4A 153 2.28e+01 d.32.1.6 105976 1jftA 340 2.32e+01 a.35.1.5,c.93.1.1 66652,66653 1s3eA 520 2.32e+01 c.3.1.2,d.16.1.5 98426,98427 1wdyA 285 2.42e+01 2fsxA 148 2.44e+01 1bif 469 2.49e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1u7eB 154 2.53e+01 2ga9D 469 2.62e+01 1h7eA 245 2.66e+01 c.68.1.13 60717 1gsoA 431 2.72e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2f6kA 307 2.72e+01 1hrkA 359 2.72e+01 1hrkA c.92.1.1 61228 1xtoA 311 2.76e+01 1khbA 625 2.82e+01 c.91.1.1,c.109.1.1 68606,68607 2fcjA 119 2.83e+01 1rds 105 2.84e+01 9rnt d.1.1.4 36236 1kqpA 271 2.86e+01 c.26.2.1 72883 2bklA 695 2.92e+01 1ji7A 89 2.93e+01 a.60.1.1 71682 1vd6A 224 3.05e+01 2aexA 346 3.10e+01 1d7oA 297 3.18e+01 1enp c.2.1.2 29907 1qo7A 394 3.18e+01 1qo7A c.69.1.11 34697 1vr9A 213 3.20e+01 1vp8A 201 3.21e+01 2glfA 450 3.22e+01 1k3xA 262 3.30e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1bia 321 3.36e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2a8nA 144 3.45e+01 1uj6A 227 3.47e+01 c.124.1.4,d.58.40.1 107898,107899 2bdrA 175 3.48e+01 1xe7A 203 3.49e+01 1g66A 207 3.50e+01 1bs9 c.69.1.30 31329 1rypG 244 3.50e+01 d.153.1.4 41938 1xuqA 212 3.52e+01 1zirA 173 3.52e+01 1uslA 170 3.59e+01 c.121.1.1 99871 1k82A 268 3.61e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 8abp 306 3.63e+01 8abp c.93.1.1 35647 1ny1A 240 3.63e+01 c.6.2.3 86395 1qtnA 164 3.65e+01 1pauA c.17.1.1 30999 2f46A 156 3.68e+01 1m70A 190 3.70e+01 a.3.1.4,a.3.1.4 91200,91201 1bn7A 294 3.71e+01 1bn6A c.69.1.8 34677 1oacA 727 3.74e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1rljA 139 3.77e+01 c.23.5.7 104983 1vkdA 338 3.82e+01 b.67.2.4 108644 1wzlA 585 3.86e+01 1jv1A 505 3.88e+01 c.68.1.5 71892 2a6sA 84 3.89e+01 1f1xA 322 3.92e+01 d.32.1.3,d.32.1.3 83208,83209 2fi1A 190 3.92e+01 1h7zA 194 3.97e+01 1qhvA b.21.1.1 60733 1iznB 277 4.01e+01 e.43.1.2 83848 2c2aA 258 4.01e+01 2bcqA 335 4.04e+01 1ecsA 126 4.05e+01 1ecsA d.32.1.2 59407 1vr3A 191 4.06e+01 1b00A 127 4.07e+01 3chy c.23.1.1 31122 1jflA 228 4.09e+01 c.78.2.1,c.78.2.1 71656,71657 2g39A 497 4.14e+01 1q7hA 153 4.15e+01 b.122.1.1,d.17.6.2 96042,96043 1h0hA 977 4.28e+01 b.52.2.2,c.81.1.1 76435,76436 1yc5A 246 4.32e+01 1o0sA 605 4.37e+01 c.2.1.7,c.58.1.3 86540,86541 1t0bA 252 4.40e+01 c.23.16.6 106199 1y2qA 143 4.50e+01 1o4rA 108 4.53e+01 d.93.1.1 92469 1qhqA 140 4.54e+01 1qhqA b.6.1.1 63326 2h1nA 567 4.55e+01 1bf5A 545 4.59e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2agkA 260 4.65e+01 1ydgA 211 4.69e+01 1k8qA 377 4.73e+01 c.69.1.6 72177 1di6A 195 4.75e+01 1di6A c.57.1.1 33863 1wu4A 396 4.81e+01 2a4vA 159 4.86e+01 1kyhA 276 4.93e+01 c.72.1.4 73222 1swvA 267 4.96e+01 2fymA 431 4.99e+01 1k2xB 143 5.08e+01 1npyA 271 5.15e+01 c.2.1.7,c.58.1.5 85995,85996 1o17A 345 5.17e+01 a.46.2.1,c.27.1.1 80765,80766 1zzgA 415 5.27e+01 1tfzA 424 5.33e+01 d.32.1.3,d.32.1.3 106886,106887 1vr6A 350 5.37e+01 1u14A 172 5.38e+01 c.51.4.3 107579 1g4mA 393 5.40e+01 b.1.18.11,b.1.18.11 65143,65144 1qb7A 236 5.40e+01 1qb7A c.61.1.1 34087 1vheA 373 5.41e+01 b.49.3.1,c.56.5.4 100669,100670 1f1uA 323 5.42e+01 d.32.1.3,d.32.1.3 83200,83201 1h5rA 293 5.48e+01 c.68.1.6 65623 2bolA 314 5.49e+01 1wddS 128 5.50e+01 1ro0A 216 5.75e+01 d.264.1.2 97664 1upsA 420 5.76e+01 1x6oA 174 5.79e+01 b.34.5.2,b.40.4.5 109493,109494 1uuzA 137 5.82e+01 d.233.1.1 100024 1f3uB 171 5.82e+01 1f3uB b.65.1.1 27525 1vjqA 79 5.83e+01 k.43.1.1 100830 1m98A 317 5.90e+01 a.175.1.1,d.17.4.6 78866,78867 2etgA 296 5.96e+01 1p1jA 533 5.97e+01 c.2.1.3,d.81.1.3 87687,87688 1q77A 138 6.09e+01 c.26.2.4 96023 2g5dA 422 6.12e+01 2irfG 113 6.13e+01 2irfG a.4.5.23 16185 1wyzA 242 6.16e+01 1vddA 228 6.18e+01 e.49.1.1 108519 1gxyA 226 6.21e+01 d.166.1.3 76380 1eiwA 111 6.21e+01 1eiwA c.23.3.1 31130 1jtdB 273 6.23e+01 b.69.5.2 67265 1rro 108 6.24e+01 1a75A a.39.1.4 17195 2ez3A 302 6.25e+01 2gnpA 266 6.26e+01 1yueA 427 6.34e+01 1qh5A 260 6.36e+01 1qh5A d.157.1.2 42057 1u60A 310 6.36e+01 e.3.1.2 107692 1y8qA 346 6.45e+01 1iujA 106 6.49e+01 d.58.4.5 90701 1rypI 222 6.50e+01 d.153.1.4 41877 1mkiA 330 6.57e+01 e.3.1.2 84994 1u24A 337 6.65e+01 1idk 359 6.66e+01 1qcxA b.80.1.2 28025 1wvfA 520 6.86e+01 2g19A 244 6.87e+01 1fxoA 293 6.90e+01 1g0rA c.68.1.6 34524 1qhxA 178 6.95e+01 1qhsA c.37.1.3 31936 1i0rA 169 6.99e+01 1i0rA b.45.1.2 61489 1ukgA 252 7.10e+01 b.29.1.1 99489 1dozA 309 7.17e+01 1ak1 c.92.1.1 35592 1ek9A 428 7.20e+01 1ek9A f.5.1.1 43809 1h80A 464 7.22e+01 b.80.1.8 65714 2bd0A 244 7.24e+01 1zk7A 467 7.24e+01 1ijaA 148 7.27e+01 1ijaA b.100.1.1 62484 1j8fA 323 7.29e+01 1j8fA c.31.1.5 62738 1ekgA 127 7.29e+01 1dlxA d.82.2.1 40021 1dpgA 485 7.35e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1xc1A 309 7.36e+01 c.94.1.1 109543 1mj5A 302 7.48e+01 c.69.1.8 91285 1qyaA 307 7.52e+01 d.21.1.2,d.21.1.2 104653,104654 2fhzA 109 7.53e+01 1y1nA 291 7.56e+01 1otjA 283 7.62e+01 b.82.2.5 93517 1ds1A 324 7.69e+01 1drtA b.82.2.2 28127 2bs3A 656 7.75e+01 1gk8I 140 7.77e+01 d.73.1.1 65242 2b8eA 273 7.78e+01 1xtaA 221 7.84e+01 1svpA 161 7.84e+01 1svpA b.47.1.3 26384 1ckmA 330 7.85e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1j0hA 588 7.92e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1m6kA 251 7.98e+01 e.3.1.1 78695 1jdhA 529 8.03e+01 a.118.1.1 66549 1ybiA 288 8.07e+01 1po5A 476 8.11e+01 a.104.1.1 94963 2cnqA 306 8.14e+01 2fug7 129 8.24e+01 1c7nA 399 8.30e+01 1d2fA c.67.1.3 34413 1xfiA 367 8.31e+01 e.50.1.1 109584 1cvrA 435 8.31e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1ihgA 370 8.36e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1rc9A 221 8.43e+01 1mpxA 615 8.53e+01 b.18.1.13,c.69.1.21 85041,85042 1fus 106 8.54e+01 9rnt d.1.1.4 36050 1gnuA 117 8.58e+01 d.15.1.3 65403 1ns5A 155 8.63e+01 c.116.1.3 80705 1stzA 338 8.64e+01 a.4.5.51,d.110.2.3 106009,106010 1wa5C 960 8.65e+01 1ev7A 317 8.74e+01 1ev7B c.52.1.9 33315 1fjhA 257 8.76e+01 1fjhB c.2.1.2 29870 1ujcA 161 8.81e+01 1pzxA 289 8.83e+01 c.119.1.1 95484 2c9wA 169 8.84e+01 1ro2A 216 8.87e+01 d.264.1.2 97665 1sflA 238 8.89e+01 1j6oA 268 8.92e+01 c.1.9.12 77088 1obdA 306 8.96e+01 d.143.1.1 86767 2cvlA 124 8.99e+01