# TARGET T0373 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0373.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1386 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.014 0.616 0.001 0.009 0.016 0.001 0.001 0.003 0.279 0.019 0.029 0.012 2 P 0.001 0.010 0.950 0.001 0.002 0.005 0.001 0.001 0.002 0.014 0.005 0.001 0.012 3 T 0.001 0.024 0.568 0.001 0.045 0.135 0.001 0.001 0.003 0.107 0.105 0.006 0.005 4 N 0.001 0.011 0.438 0.001 0.052 0.190 0.001 0.001 0.001 0.205 0.097 0.001 0.005 5 Q 0.001 0.004 0.200 0.001 0.090 0.534 0.001 0.001 0.001 0.089 0.079 0.001 0.002 6 D 0.001 0.001 0.050 0.001 0.061 0.777 0.001 0.001 0.001 0.022 0.088 0.001 0.001 7 L 0.001 0.001 0.030 0.001 0.028 0.883 0.001 0.001 0.001 0.016 0.041 0.001 0.001 8 Q 0.001 0.001 0.017 0.001 0.009 0.953 0.001 0.001 0.001 0.008 0.011 0.001 0.001 9 L 0.001 0.001 0.003 0.001 0.003 0.985 0.001 0.001 0.001 0.003 0.005 0.001 0.001 10 A 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 11 A 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 H 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 14 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 15 S 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.005 0.001 0.001 16 Q 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 17 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 18 T 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 19 T 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.010 0.001 0.001 20 L 0.001 0.001 0.003 0.001 0.001 0.984 0.001 0.001 0.001 0.002 0.010 0.001 0.001 21 T 0.001 0.001 0.004 0.001 0.002 0.975 0.001 0.001 0.001 0.002 0.016 0.001 0.001 22 R 0.001 0.001 0.004 0.001 0.002 0.959 0.001 0.001 0.001 0.004 0.031 0.001 0.001 23 R 0.001 0.001 0.015 0.001 0.003 0.919 0.001 0.001 0.001 0.011 0.051 0.001 0.001 24 L 0.001 0.001 0.035 0.001 0.007 0.902 0.001 0.001 0.001 0.014 0.040 0.001 0.001 25 R 0.001 0.001 0.019 0.001 0.007 0.940 0.001 0.001 0.001 0.008 0.024 0.001 0.001 26 R 0.001 0.001 0.017 0.001 0.011 0.939 0.001 0.001 0.001 0.009 0.024 0.001 0.001 27 E 0.001 0.001 0.014 0.001 0.009 0.936 0.001 0.001 0.001 0.013 0.027 0.001 0.001 28 A 0.001 0.001 0.019 0.001 0.014 0.916 0.001 0.001 0.001 0.010 0.038 0.001 0.001 29 Q 0.001 0.001 0.026 0.001 0.029 0.863 0.001 0.001 0.002 0.019 0.058 0.001 0.001 30 A 0.001 0.003 0.047 0.001 0.080 0.685 0.001 0.001 0.001 0.024 0.157 0.001 0.001 31 D 0.001 0.002 0.033 0.001 0.072 0.338 0.001 0.001 0.001 0.153 0.398 0.001 0.001 32 P 0.001 0.003 0.106 0.001 0.023 0.069 0.001 0.001 0.004 0.071 0.723 0.001 0.001 33 V 0.001 0.016 0.665 0.001 0.003 0.034 0.001 0.001 0.006 0.238 0.036 0.001 0.002 34 Q 0.001 0.006 0.900 0.001 0.001 0.019 0.001 0.001 0.003 0.066 0.005 0.001 0.001 35 F 0.001 0.001 0.015 0.001 0.020 0.920 0.001 0.001 0.001 0.012 0.033 0.001 0.001 36 S 0.001 0.001 0.005 0.001 0.014 0.956 0.001 0.001 0.001 0.005 0.020 0.001 0.001 37 Q 0.001 0.001 0.001 0.001 0.010 0.985 0.001 0.001 0.001 0.001 0.002 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 G 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 43 A 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 44 I 0.001 0.001 0.001 0.001 0.002 0.979 0.001 0.001 0.001 0.002 0.015 0.001 0.001 45 D 0.001 0.001 0.004 0.001 0.005 0.936 0.001 0.001 0.001 0.003 0.050 0.001 0.001 46 R 0.001 0.001 0.012 0.001 0.006 0.859 0.001 0.001 0.001 0.009 0.113 0.001 0.001 47 L 0.001 0.002 0.081 0.001 0.018 0.660 0.001 0.001 0.001 0.055 0.180 0.001 0.001 48 G 0.001 0.008 0.163 0.001 0.059 0.172 0.001 0.001 0.001 0.162 0.432 0.001 0.003 49 G 0.001 0.001 0.092 0.001 0.034 0.029 0.001 0.001 0.001 0.319 0.523 0.001 0.001 50 D 0.001 0.004 0.489 0.001 0.016 0.009 0.001 0.001 0.002 0.330 0.144 0.001 0.003 51 V 0.001 0.054 0.620 0.001 0.002 0.003 0.001 0.001 0.014 0.276 0.006 0.017 0.008 52 T 0.001 0.027 0.925 0.001 0.001 0.005 0.001 0.001 0.010 0.012 0.001 0.001 0.019 53 P 0.001 0.001 0.010 0.001 0.008 0.948 0.001 0.001 0.001 0.003 0.030 0.001 0.001 54 S 0.001 0.001 0.004 0.001 0.005 0.971 0.001 0.001 0.001 0.004 0.016 0.001 0.001 55 E 0.001 0.001 0.003 0.001 0.007 0.984 0.001 0.001 0.001 0.001 0.003 0.001 0.001 56 L 0.001 0.001 0.002 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 57 A 0.001 0.001 0.002 0.001 0.004 0.983 0.001 0.001 0.001 0.001 0.008 0.001 0.001 58 A 0.001 0.001 0.002 0.001 0.007 0.956 0.001 0.001 0.001 0.001 0.032 0.001 0.001 59 A 0.001 0.001 0.004 0.001 0.014 0.900 0.001 0.001 0.001 0.005 0.074 0.001 0.001 60 E 0.001 0.002 0.010 0.001 0.017 0.521 0.001 0.001 0.001 0.029 0.418 0.001 0.002 61 R 0.001 0.002 0.104 0.001 0.019 0.173 0.001 0.001 0.002 0.056 0.640 0.002 0.001 62 M 0.001 0.032 0.532 0.001 0.011 0.071 0.001 0.001 0.007 0.272 0.054 0.003 0.017 63 R 0.001 0.016 0.723 0.001 0.007 0.035 0.001 0.001 0.004 0.179 0.019 0.005 0.011 64 S 0.001 0.002 0.071 0.001 0.090 0.448 0.001 0.001 0.001 0.100 0.285 0.001 0.002 65 S 0.001 0.001 0.030 0.001 0.072 0.642 0.001 0.001 0.001 0.057 0.197 0.001 0.001 66 N 0.001 0.003 0.035 0.001 0.026 0.847 0.001 0.001 0.002 0.045 0.039 0.001 0.002 67 L 0.001 0.002 0.019 0.001 0.003 0.957 0.001 0.001 0.002 0.010 0.005 0.001 0.001 68 A 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 70 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 74 L 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 75 E 0.001 0.001 0.002 0.001 0.006 0.963 0.001 0.001 0.001 0.001 0.027 0.001 0.001 76 R 0.001 0.001 0.003 0.001 0.019 0.838 0.001 0.001 0.001 0.006 0.131 0.001 0.001 77 G 0.001 0.001 0.004 0.001 0.010 0.108 0.001 0.001 0.001 0.009 0.868 0.001 0.001 78 G 0.001 0.001 0.025 0.001 0.004 0.007 0.001 0.001 0.001 0.023 0.938 0.001 0.001 79 L 0.001 0.006 0.828 0.001 0.003 0.005 0.001 0.001 0.030 0.079 0.011 0.011 0.025 80 I 0.005 0.049 0.279 0.013 0.004 0.006 0.007 0.002 0.245 0.062 0.006 0.083 0.240 81 V 0.019 0.018 0.191 0.016 0.007 0.005 0.014 0.007 0.131 0.037 0.008 0.403 0.144 82 R 0.035 0.029 0.223 0.011 0.008 0.005 0.028 0.009 0.088 0.027 0.011 0.043 0.483 83 H 0.013 0.016 0.345 0.011 0.004 0.003 0.007 0.002 0.081 0.074 0.019 0.322 0.103 84 A 0.002 0.024 0.569 0.007 0.007 0.003 0.001 0.001 0.016 0.182 0.084 0.011 0.093 85 D 0.001 0.016 0.729 0.002 0.006 0.002 0.001 0.001 0.004 0.193 0.033 0.003 0.010 86 P 0.001 0.002 0.083 0.001 0.089 0.023 0.001 0.001 0.001 0.163 0.633 0.002 0.004 87 Q 0.001 0.003 0.055 0.001 0.100 0.022 0.001 0.001 0.001 0.123 0.689 0.002 0.005 88 D 0.002 0.026 0.271 0.003 0.152 0.032 0.001 0.001 0.001 0.242 0.209 0.015 0.048 89 G 0.011 0.015 0.407 0.011 0.047 0.025 0.001 0.001 0.001 0.164 0.219 0.017 0.082 90 R 0.137 0.037 0.223 0.014 0.016 0.013 0.011 0.001 0.006 0.106 0.090 0.187 0.159 91 R 0.264 0.008 0.100 0.026 0.002 0.005 0.017 0.001 0.013 0.025 0.005 0.033 0.502 92 T 0.429 0.002 0.047 0.020 0.001 0.002 0.046 0.002 0.030 0.010 0.001 0.359 0.052 93 R 0.517 0.003 0.017 0.003 0.001 0.001 0.084 0.004 0.045 0.004 0.001 0.020 0.302 94 V 0.600 0.002 0.036 0.016 0.003 0.002 0.095 0.016 0.040 0.006 0.001 0.108 0.075 95 S 0.594 0.004 0.029 0.002 0.001 0.001 0.066 0.007 0.061 0.006 0.001 0.075 0.151 96 L 0.146 0.017 0.371 0.001 0.003 0.002 0.015 0.002 0.058 0.047 0.004 0.135 0.200 97 S 0.002 0.003 0.759 0.001 0.001 0.004 0.001 0.001 0.016 0.119 0.004 0.003 0.088 98 S 0.001 0.002 0.035 0.001 0.014 0.793 0.001 0.001 0.001 0.067 0.086 0.001 0.001 99 E 0.001 0.001 0.003 0.001 0.007 0.945 0.001 0.001 0.001 0.007 0.038 0.001 0.001 100 G 0.001 0.001 0.003 0.001 0.007 0.978 0.001 0.001 0.001 0.003 0.010 0.001 0.001 101 R 0.001 0.001 0.007 0.001 0.003 0.986 0.001 0.001 0.001 0.002 0.001 0.001 0.001 102 R 0.001 0.001 0.004 0.001 0.004 0.982 0.001 0.001 0.001 0.001 0.007 0.001 0.001 103 N 0.001 0.001 0.003 0.001 0.005 0.972 0.001 0.001 0.001 0.002 0.018 0.001 0.001 104 L 0.001 0.001 0.007 0.001 0.009 0.960 0.001 0.001 0.001 0.003 0.020 0.001 0.001 105 Y 0.001 0.001 0.009 0.001 0.014 0.920 0.001 0.001 0.001 0.008 0.048 0.001 0.001 106 G 0.001 0.001 0.016 0.001 0.008 0.868 0.001 0.001 0.001 0.014 0.092 0.001 0.001 107 N 0.001 0.001 0.055 0.001 0.007 0.845 0.001 0.001 0.001 0.035 0.055 0.001 0.001 108 R 0.001 0.001 0.035 0.001 0.009 0.911 0.001 0.001 0.001 0.022 0.021 0.001 0.001 109 A 0.001 0.001 0.011 0.001 0.013 0.949 0.001 0.001 0.001 0.006 0.020 0.001 0.001 110 K 0.001 0.001 0.004 0.001 0.006 0.975 0.001 0.001 0.001 0.002 0.012 0.001 0.001 111 R 0.001 0.001 0.005 0.001 0.002 0.983 0.001 0.001 0.001 0.002 0.008 0.001 0.001 112 E 0.001 0.001 0.004 0.001 0.002 0.984 0.001 0.001 0.001 0.003 0.007 0.001 0.001 113 E 0.001 0.001 0.002 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.010 0.001 0.001 114 W 0.001 0.001 0.003 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.011 0.001 0.001 115 L 0.001 0.001 0.005 0.001 0.001 0.984 0.001 0.001 0.001 0.001 0.008 0.001 0.001 116 V 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 117 R 0.001 0.001 0.002 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.009 0.001 0.001 118 A 0.001 0.001 0.002 0.001 0.001 0.982 0.001 0.001 0.001 0.002 0.012 0.001 0.001 119 M 0.001 0.001 0.014 0.001 0.011 0.934 0.001 0.001 0.002 0.004 0.034 0.001 0.001 120 H 0.001 0.001 0.013 0.001 0.060 0.793 0.001 0.001 0.001 0.006 0.126 0.001 0.001 121 A 0.001 0.001 0.021 0.001 0.042 0.511 0.001 0.001 0.001 0.064 0.360 0.001 0.001 122 C 0.001 0.004 0.094 0.001 0.014 0.191 0.001 0.001 0.001 0.103 0.591 0.001 0.001 123 L 0.001 0.024 0.627 0.001 0.002 0.041 0.001 0.001 0.002 0.266 0.037 0.001 0.001 124 D 0.001 0.003 0.904 0.001 0.001 0.018 0.001 0.001 0.001 0.071 0.003 0.001 0.001 125 E 0.001 0.001 0.004 0.001 0.015 0.956 0.001 0.001 0.001 0.006 0.020 0.001 0.001 126 S 0.001 0.001 0.002 0.001 0.014 0.970 0.001 0.001 0.001 0.002 0.013 0.001 0.001 127 E 0.001 0.001 0.001 0.001 0.006 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 128 R 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 130 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 131 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 132 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 133 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 134 A 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 135 G 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 136 P 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 137 L 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 138 L 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.002 0.006 0.001 0.001 139 T 0.001 0.001 0.003 0.001 0.004 0.981 0.001 0.001 0.001 0.001 0.010 0.001 0.001 140 R 0.001 0.001 0.002 0.001 0.005 0.954 0.001 0.001 0.001 0.003 0.036 0.001 0.001 141 L 0.001 0.001 0.011 0.001 0.008 0.876 0.001 0.001 0.001 0.011 0.094 0.001 0.001 142 A 0.001 0.003 0.090 0.001 0.018 0.705 0.001 0.001 0.001 0.060 0.123 0.001 0.001 143 Q 0.001 0.004 0.204 0.001 0.055 0.385 0.001 0.001 0.001 0.109 0.237 0.002 0.002 144 F 0.001 0.005 0.165 0.001 0.072 0.276 0.001 0.001 0.001 0.260 0.213 0.002 0.005 145 E 0.001 0.010 0.511 0.001 0.032 0.149 0.001 0.001 0.001 0.167 0.120 0.003 0.006 146 E 0.001 0.007 0.853 0.001 0.010 0.048 0.001 0.001 0.002 0.030 0.044 0.001 0.004 147 P 0.001 0.001 0.976 0.001 0.002 0.011 0.001 0.001 0.001 0.004 0.004 0.001 0.001