# TARGET T0373 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0373.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3196 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.008 0.055 0.932 2 P 0.007 0.005 0.003 0.011 0.098 0.877 3 T 0.005 0.006 0.006 0.027 0.145 0.809 4 N 0.006 0.009 0.032 0.129 0.252 0.572 5 Q 0.004 0.002 0.081 0.583 0.155 0.174 6 D 0.005 0.002 0.055 0.752 0.081 0.106 7 L 0.003 0.001 0.024 0.896 0.037 0.038 8 Q 0.005 0.002 0.014 0.934 0.020 0.026 9 L 0.002 0.001 0.005 0.976 0.008 0.007 10 A 0.002 0.001 0.003 0.982 0.007 0.006 11 A 0.001 0.001 0.003 0.992 0.003 0.002 12 H 0.001 0.001 0.003 0.992 0.003 0.002 13 L 0.001 0.001 0.001 0.995 0.002 0.002 14 R 0.001 0.001 0.001 0.995 0.002 0.001 15 S 0.001 0.001 0.002 0.993 0.003 0.002 16 Q 0.001 0.001 0.002 0.992 0.003 0.003 17 V 0.001 0.001 0.001 0.994 0.003 0.002 18 T 0.001 0.001 0.002 0.992 0.004 0.002 19 T 0.001 0.001 0.003 0.987 0.006 0.004 20 L 0.001 0.001 0.003 0.984 0.007 0.006 21 T 0.001 0.001 0.002 0.988 0.005 0.004 22 R 0.001 0.001 0.002 0.990 0.005 0.003 23 R 0.001 0.001 0.002 0.986 0.005 0.006 24 L 0.001 0.001 0.002 0.982 0.006 0.008 25 R 0.001 0.001 0.004 0.984 0.006 0.006 26 R 0.001 0.001 0.006 0.978 0.008 0.006 27 E 0.001 0.001 0.008 0.963 0.014 0.014 28 A 0.001 0.001 0.012 0.934 0.031 0.021 29 Q 0.001 0.002 0.020 0.780 0.119 0.078 30 A 0.002 0.003 0.034 0.476 0.299 0.186 31 D 0.002 0.002 0.021 0.107 0.498 0.369 32 P 0.003 0.003 0.021 0.032 0.420 0.521 33 V 0.013 0.024 0.008 0.021 0.293 0.642 34 Q 0.009 0.017 0.002 0.023 0.098 0.851 35 F 0.001 0.001 0.020 0.965 0.008 0.007 36 S 0.001 0.001 0.013 0.977 0.006 0.004 37 Q 0.001 0.001 0.006 0.992 0.001 0.001 38 L 0.001 0.001 0.001 0.996 0.001 0.001 39 V 0.001 0.001 0.001 0.997 0.001 0.001 40 V 0.001 0.001 0.001 0.998 0.001 0.001 41 L 0.001 0.001 0.001 0.997 0.001 0.001 42 G 0.001 0.001 0.003 0.994 0.002 0.001 43 A 0.001 0.001 0.005 0.989 0.004 0.001 44 I 0.001 0.001 0.005 0.984 0.007 0.003 45 D 0.001 0.001 0.010 0.974 0.011 0.004 46 R 0.001 0.001 0.005 0.960 0.022 0.012 47 L 0.001 0.003 0.007 0.877 0.037 0.075 48 G 0.001 0.001 0.003 0.011 0.178 0.806 49 G 0.004 0.001 0.004 0.002 0.242 0.748 50 D 0.099 0.040 0.006 0.003 0.199 0.653 51 V 0.157 0.108 0.001 0.004 0.092 0.637 52 T 0.057 0.014 0.001 0.005 0.040 0.883 53 P 0.001 0.001 0.017 0.971 0.005 0.005 54 S 0.001 0.001 0.014 0.977 0.005 0.003 55 E 0.001 0.001 0.020 0.970 0.008 0.002 56 L 0.001 0.001 0.012 0.977 0.007 0.003 57 A 0.001 0.001 0.007 0.985 0.005 0.002 58 A 0.001 0.001 0.013 0.969 0.010 0.006 59 A 0.002 0.001 0.016 0.911 0.038 0.033 60 E 0.004 0.004 0.028 0.816 0.070 0.078 61 R 0.004 0.002 0.013 0.050 0.209 0.722 62 M 0.016 0.024 0.009 0.029 0.186 0.736 63 R 0.015 0.008 0.003 0.019 0.126 0.829 64 S 0.003 0.001 0.025 0.820 0.069 0.082 65 S 0.003 0.001 0.025 0.857 0.067 0.047 66 N 0.003 0.002 0.018 0.914 0.040 0.024 67 L 0.001 0.001 0.004 0.988 0.004 0.003 68 A 0.001 0.001 0.003 0.990 0.003 0.003 69 A 0.001 0.001 0.005 0.988 0.004 0.002 70 L 0.001 0.001 0.004 0.986 0.005 0.004 71 L 0.001 0.001 0.003 0.989 0.004 0.003 72 R 0.001 0.001 0.003 0.991 0.004 0.001 73 E 0.001 0.001 0.003 0.988 0.006 0.003 74 L 0.001 0.001 0.005 0.981 0.009 0.005 75 E 0.001 0.001 0.010 0.972 0.013 0.004 76 R 0.001 0.001 0.013 0.961 0.019 0.006 77 G 0.001 0.001 0.022 0.745 0.090 0.141 78 G 0.009 0.001 0.009 0.014 0.189 0.780 79 L 0.318 0.013 0.011 0.006 0.165 0.487 80 I 0.820 0.015 0.005 0.003 0.045 0.113 81 V 0.889 0.006 0.003 0.002 0.026 0.074 82 R 0.809 0.004 0.002 0.001 0.039 0.144 83 H 0.641 0.015 0.003 0.001 0.075 0.265 84 A 0.383 0.050 0.003 0.001 0.105 0.458 85 D 0.087 0.042 0.001 0.001 0.589 0.281 86 P 0.006 0.004 0.031 0.003 0.930 0.026 87 Q 0.003 0.001 0.025 0.002 0.959 0.010 88 D 0.003 0.003 0.023 0.001 0.961 0.008 89 G 0.025 0.007 0.025 0.005 0.802 0.136 90 R 0.262 0.064 0.021 0.009 0.345 0.299 91 R 0.572 0.015 0.009 0.006 0.201 0.196 92 T 0.819 0.002 0.001 0.003 0.048 0.125 93 R 0.973 0.001 0.001 0.001 0.006 0.018 94 V 0.984 0.001 0.001 0.002 0.004 0.009 95 S 0.970 0.003 0.001 0.003 0.005 0.019 96 L 0.738 0.012 0.001 0.009 0.032 0.209 97 S 0.080 0.003 0.001 0.008 0.099 0.809 98 S 0.003 0.001 0.045 0.809 0.102 0.040 99 E 0.001 0.001 0.040 0.894 0.058 0.006 100 G 0.001 0.001 0.019 0.956 0.021 0.003 101 R 0.002 0.001 0.014 0.965 0.012 0.006 102 R 0.001 0.001 0.013 0.963 0.013 0.009 103 N 0.002 0.001 0.018 0.940 0.021 0.018 104 L 0.007 0.001 0.024 0.875 0.051 0.041 105 Y 0.005 0.002 0.028 0.870 0.064 0.030 106 G 0.004 0.001 0.034 0.812 0.084 0.064 107 N 0.002 0.001 0.020 0.782 0.068 0.127 108 R 0.001 0.001 0.014 0.878 0.037 0.069 109 A 0.001 0.001 0.011 0.944 0.021 0.023 110 K 0.001 0.001 0.011 0.946 0.022 0.019 111 R 0.001 0.001 0.006 0.969 0.013 0.012 112 E 0.001 0.001 0.004 0.980 0.008 0.007 113 E 0.001 0.001 0.002 0.991 0.004 0.002 114 W 0.001 0.001 0.002 0.994 0.002 0.002 115 L 0.001 0.001 0.001 0.996 0.002 0.001 116 V 0.001 0.001 0.001 0.996 0.001 0.001 117 R 0.001 0.001 0.002 0.992 0.004 0.002 118 A 0.001 0.001 0.005 0.982 0.008 0.004 119 M 0.001 0.001 0.008 0.963 0.019 0.009 120 H 0.001 0.001 0.034 0.887 0.059 0.017 121 A 0.002 0.001 0.043 0.717 0.124 0.113 122 C 0.003 0.004 0.028 0.120 0.243 0.601 123 L 0.003 0.028 0.005 0.059 0.202 0.703 124 D 0.002 0.003 0.001 0.023 0.075 0.897 125 E 0.001 0.001 0.007 0.990 0.003 0.001 126 S 0.001 0.001 0.014 0.981 0.005 0.001 127 E 0.001 0.001 0.006 0.992 0.002 0.001 128 R 0.001 0.001 0.001 0.996 0.001 0.001 129 A 0.001 0.001 0.001 0.998 0.001 0.001 130 L 0.001 0.001 0.001 0.998 0.001 0.001 131 L 0.001 0.001 0.001 0.997 0.001 0.001 132 A 0.001 0.001 0.004 0.993 0.003 0.001 133 A 0.001 0.001 0.006 0.985 0.007 0.003 134 A 0.001 0.001 0.003 0.969 0.007 0.021 135 G 0.001 0.001 0.015 0.899 0.032 0.052 136 P 0.001 0.001 0.016 0.966 0.014 0.005 137 L 0.001 0.001 0.012 0.980 0.007 0.002 138 L 0.001 0.001 0.004 0.991 0.004 0.001 139 T 0.001 0.001 0.004 0.991 0.003 0.001 140 R 0.001 0.001 0.004 0.990 0.005 0.002 141 L 0.001 0.001 0.005 0.984 0.007 0.005 142 A 0.001 0.001 0.012 0.973 0.009 0.005 143 Q 0.001 0.001 0.021 0.939 0.021 0.018 144 F 0.001 0.002 0.038 0.627 0.093 0.239 145 E 0.003 0.006 0.025 0.241 0.163 0.563 146 E 0.002 0.002 0.003 0.021 0.134 0.836 147 P 0.001 0.001 0.001 0.012 0.076 0.908