# TARGET T0373 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0373.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3196 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.146 0.014 0.014 0.014 0.010 0.015 0.029 0.007 0.001 0.002 0.748 2 P 0.010 0.001 0.004 0.005 0.002 0.002 0.008 0.001 0.001 0.001 0.967 3 T 0.021 0.001 0.003 0.011 0.002 0.005 0.088 0.001 0.001 0.002 0.867 4 N 0.052 0.001 0.001 0.010 0.001 0.002 0.088 0.001 0.001 0.002 0.843 5 Q 0.065 0.004 0.001 0.009 0.001 0.002 0.221 0.001 0.001 0.005 0.692 6 D 0.056 0.009 0.001 0.009 0.001 0.003 0.500 0.001 0.001 0.009 0.412 7 L 0.094 0.073 0.001 0.017 0.002 0.003 0.322 0.001 0.001 0.015 0.472 8 Q 0.055 0.213 0.001 0.003 0.001 0.002 0.428 0.001 0.001 0.011 0.286 9 L 0.037 0.688 0.002 0.004 0.002 0.004 0.088 0.004 0.001 0.003 0.169 10 A 0.018 0.922 0.001 0.001 0.001 0.001 0.009 0.003 0.001 0.001 0.043 11 A 0.011 0.933 0.001 0.001 0.001 0.001 0.007 0.003 0.001 0.001 0.044 12 H 0.014 0.955 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.025 13 L 0.009 0.981 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.005 14 R 0.004 0.982 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.010 15 S 0.005 0.974 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.018 16 Q 0.006 0.981 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.008 17 V 0.008 0.983 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.004 18 T 0.003 0.987 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.006 19 T 0.005 0.981 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.011 20 L 0.011 0.979 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.005 21 T 0.006 0.976 0.004 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.007 22 R 0.006 0.975 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.013 23 R 0.021 0.949 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.023 24 L 0.013 0.960 0.006 0.001 0.001 0.001 0.002 0.005 0.001 0.001 0.014 25 R 0.010 0.953 0.002 0.001 0.001 0.001 0.001 0.012 0.001 0.001 0.020 26 R 0.019 0.931 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.043 27 E 0.022 0.927 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.043 28 A 0.056 0.887 0.002 0.001 0.001 0.001 0.002 0.014 0.001 0.001 0.035 29 Q 0.079 0.807 0.012 0.002 0.001 0.004 0.004 0.026 0.001 0.001 0.065 30 A 0.220 0.601 0.016 0.002 0.001 0.004 0.003 0.035 0.001 0.001 0.118 31 D 0.296 0.201 0.006 0.007 0.003 0.002 0.005 0.108 0.001 0.001 0.373 32 P 0.051 0.011 0.013 0.003 0.001 0.001 0.003 0.004 0.001 0.001 0.913 33 V 0.025 0.010 0.083 0.028 0.005 0.013 0.121 0.002 0.001 0.002 0.711 34 Q 0.102 0.010 0.002 0.034 0.004 0.009 0.336 0.001 0.001 0.002 0.500 35 F 0.030 0.015 0.001 0.013 0.001 0.001 0.024 0.001 0.001 0.001 0.914 36 S 0.019 0.062 0.001 0.012 0.003 0.005 0.235 0.001 0.001 0.003 0.661 37 Q 0.037 0.078 0.001 0.013 0.005 0.012 0.547 0.002 0.001 0.020 0.286 38 L 0.079 0.706 0.001 0.011 0.003 0.005 0.026 0.002 0.001 0.003 0.162 39 V 0.011 0.919 0.001 0.002 0.002 0.003 0.016 0.001 0.001 0.001 0.043 40 V 0.004 0.972 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.016 41 L 0.005 0.983 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.006 42 G 0.003 0.985 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.005 43 A 0.016 0.960 0.002 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.014 44 I 0.016 0.954 0.006 0.001 0.002 0.003 0.001 0.008 0.001 0.001 0.009 45 D 0.020 0.907 0.003 0.005 0.005 0.008 0.002 0.024 0.001 0.001 0.026 46 R 0.085 0.723 0.022 0.005 0.009 0.009 0.009 0.063 0.001 0.001 0.074 47 L 0.283 0.445 0.052 0.003 0.006 0.009 0.033 0.037 0.001 0.004 0.127 48 G 0.090 0.065 0.091 0.017 0.008 0.009 0.047 0.035 0.001 0.005 0.633 49 G 0.136 0.016 0.099 0.025 0.008 0.009 0.142 0.014 0.001 0.012 0.538 50 D 0.239 0.007 0.054 0.022 0.003 0.004 0.098 0.005 0.001 0.009 0.560 51 V 0.068 0.008 0.042 0.136 0.010 0.019 0.119 0.003 0.001 0.007 0.589 52 T 0.060 0.002 0.003 0.061 0.010 0.014 0.471 0.001 0.001 0.003 0.375 53 P 0.001 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.995 54 S 0.001 0.002 0.001 0.011 0.004 0.010 0.548 0.001 0.001 0.004 0.419 55 E 0.038 0.007 0.001 0.003 0.001 0.004 0.812 0.001 0.001 0.027 0.107 56 L 0.069 0.818 0.001 0.013 0.004 0.002 0.008 0.002 0.001 0.001 0.083 57 A 0.042 0.911 0.001 0.002 0.001 0.004 0.011 0.001 0.001 0.003 0.025 58 A 0.028 0.915 0.001 0.002 0.002 0.008 0.004 0.009 0.001 0.001 0.031 59 A 0.108 0.798 0.002 0.001 0.001 0.002 0.001 0.042 0.001 0.001 0.046 60 E 0.090 0.794 0.011 0.002 0.005 0.002 0.003 0.064 0.001 0.001 0.028 61 R 0.220 0.315 0.035 0.008 0.008 0.013 0.021 0.147 0.001 0.004 0.229 62 M 0.114 0.125 0.485 0.034 0.013 0.025 0.034 0.022 0.001 0.002 0.145 63 R 0.050 0.052 0.016 0.068 0.028 0.043 0.095 0.011 0.001 0.002 0.635 64 S 0.020 0.006 0.011 0.021 0.003 0.006 0.024 0.001 0.001 0.001 0.906 65 S 0.020 0.008 0.003 0.033 0.004 0.007 0.150 0.001 0.001 0.003 0.771 66 N 0.123 0.011 0.002 0.018 0.004 0.005 0.401 0.001 0.001 0.016 0.417 67 L 0.136 0.142 0.005 0.037 0.008 0.017 0.270 0.002 0.001 0.012 0.372 68 A 0.035 0.450 0.001 0.031 0.010 0.016 0.163 0.001 0.001 0.005 0.288 69 A 0.017 0.481 0.001 0.002 0.001 0.002 0.089 0.001 0.001 0.002 0.405 70 L 0.018 0.862 0.001 0.001 0.001 0.002 0.016 0.001 0.001 0.001 0.098 71 L 0.011 0.962 0.001 0.001 0.001 0.004 0.006 0.002 0.001 0.001 0.012 72 R 0.006 0.975 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.014 73 E 0.012 0.967 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.019 74 L 0.012 0.976 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.009 75 E 0.010 0.970 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.010 76 R 0.021 0.932 0.010 0.001 0.001 0.002 0.004 0.011 0.001 0.001 0.019 77 G 0.109 0.767 0.002 0.002 0.001 0.002 0.001 0.071 0.001 0.001 0.045 78 G 0.432 0.301 0.025 0.007 0.010 0.003 0.003 0.099 0.001 0.001 0.118 79 L 0.041 0.065 0.676 0.020 0.016 0.020 0.014 0.004 0.001 0.001 0.144 80 I 0.004 0.028 0.023 0.214 0.205 0.297 0.031 0.004 0.001 0.001 0.193 81 V 0.013 0.020 0.002 0.427 0.138 0.221 0.022 0.001 0.001 0.001 0.155 82 R 0.016 0.019 0.003 0.181 0.130 0.214 0.045 0.003 0.001 0.002 0.386 83 H 0.021 0.006 0.004 0.184 0.143 0.214 0.040 0.004 0.001 0.004 0.379 84 A 0.010 0.001 0.004 0.098 0.066 0.156 0.065 0.002 0.001 0.005 0.593 85 D 0.016 0.001 0.001 0.035 0.138 0.126 0.231 0.001 0.001 0.005 0.446 86 P 0.002 0.001 0.001 0.003 0.003 0.002 0.008 0.001 0.001 0.001 0.980 87 Q 0.004 0.001 0.001 0.004 0.010 0.013 0.606 0.001 0.001 0.007 0.355 88 D 0.616 0.001 0.001 0.002 0.002 0.003 0.136 0.001 0.001 0.079 0.160 89 G 0.514 0.033 0.003 0.013 0.010 0.010 0.169 0.001 0.001 0.039 0.207 90 R 0.153 0.011 0.010 0.033 0.068 0.050 0.417 0.001 0.001 0.032 0.226 91 R 0.043 0.005 0.013 0.071 0.064 0.153 0.088 0.001 0.001 0.008 0.553 92 T 0.002 0.001 0.001 0.097 0.361 0.491 0.020 0.001 0.001 0.001 0.025 93 R 0.003 0.001 0.001 0.097 0.343 0.390 0.025 0.001 0.001 0.001 0.139 94 V 0.001 0.001 0.001 0.214 0.255 0.431 0.014 0.001 0.001 0.001 0.083 95 S 0.001 0.001 0.001 0.292 0.212 0.411 0.027 0.001 0.001 0.001 0.056 96 L 0.006 0.001 0.001 0.290 0.123 0.247 0.055 0.001 0.001 0.004 0.272 97 S 0.006 0.001 0.001 0.312 0.154 0.178 0.182 0.001 0.001 0.005 0.160 98 S 0.001 0.001 0.001 0.014 0.003 0.004 0.046 0.001 0.001 0.001 0.930 99 E 0.002 0.001 0.001 0.007 0.004 0.009 0.691 0.001 0.001 0.009 0.277 100 G 0.323 0.005 0.001 0.005 0.003 0.005 0.396 0.001 0.001 0.128 0.133 101 R 0.292 0.344 0.007 0.005 0.001 0.003 0.153 0.001 0.001 0.013 0.181 102 R 0.019 0.369 0.002 0.003 0.003 0.004 0.084 0.001 0.001 0.001 0.514 103 N 0.073 0.539 0.001 0.003 0.006 0.008 0.035 0.005 0.001 0.001 0.330 104 L 0.067 0.835 0.002 0.001 0.002 0.006 0.012 0.003 0.001 0.001 0.070 105 Y 0.014 0.893 0.002 0.001 0.002 0.005 0.013 0.003 0.001 0.001 0.068 106 G 0.042 0.811 0.001 0.001 0.001 0.002 0.011 0.010 0.001 0.001 0.121 107 N 0.061 0.873 0.003 0.001 0.001 0.001 0.005 0.009 0.001 0.001 0.046 108 R 0.026 0.900 0.007 0.001 0.001 0.001 0.007 0.009 0.001 0.001 0.048 109 A 0.019 0.844 0.007 0.001 0.001 0.001 0.013 0.007 0.001 0.001 0.109 110 K 0.040 0.817 0.001 0.001 0.001 0.001 0.007 0.008 0.001 0.001 0.126 111 R 0.019 0.945 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.028 112 E 0.005 0.960 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.029 113 E 0.008 0.955 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.031 114 W 0.007 0.976 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 115 L 0.004 0.989 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 116 V 0.003 0.991 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.004 117 R 0.009 0.980 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.008 118 A 0.021 0.963 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.009 119 M 0.037 0.931 0.004 0.001 0.001 0.001 0.001 0.014 0.001 0.001 0.012 120 H 0.038 0.865 0.028 0.002 0.001 0.004 0.002 0.032 0.001 0.001 0.027 121 A 0.104 0.507 0.009 0.003 0.001 0.001 0.002 0.088 0.001 0.001 0.285 122 C 0.459 0.204 0.009 0.007 0.001 0.001 0.006 0.185 0.001 0.001 0.128 123 L 0.382 0.057 0.325 0.013 0.001 0.002 0.034 0.038 0.001 0.005 0.144 124 D 0.063 0.014 0.045 0.012 0.002 0.002 0.451 0.012 0.001 0.002 0.398 125 E 0.002 0.001 0.003 0.002 0.001 0.001 0.009 0.001 0.001 0.001 0.983 126 S 0.001 0.001 0.001 0.001 0.001 0.001 0.747 0.001 0.001 0.002 0.250 127 E 0.012 0.004 0.001 0.001 0.001 0.001 0.919 0.001 0.001 0.025 0.039 128 R 0.056 0.816 0.001 0.003 0.001 0.001 0.066 0.002 0.001 0.004 0.051 129 A 0.009 0.959 0.001 0.001 0.001 0.001 0.011 0.001 0.001 0.001 0.019 130 L 0.011 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 131 L 0.008 0.987 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.003 132 A 0.004 0.990 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.004 133 A 0.016 0.965 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.012 134 A 0.063 0.912 0.002 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.008 135 G 0.083 0.872 0.007 0.001 0.001 0.001 0.001 0.013 0.001 0.001 0.025 136 P 0.011 0.564 0.010 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.409 137 L 0.020 0.698 0.001 0.001 0.001 0.001 0.003 0.009 0.001 0.001 0.268 138 L 0.031 0.916 0.001 0.001 0.001 0.001 0.004 0.004 0.001 0.001 0.044 139 T 0.005 0.970 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.017 140 R 0.015 0.965 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 141 L 0.021 0.961 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.014 142 A 0.031 0.942 0.003 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.015 143 Q 0.064 0.798 0.010 0.002 0.002 0.002 0.002 0.055 0.001 0.001 0.064 144 F 0.267 0.527 0.016 0.003 0.001 0.002 0.002 0.050 0.001 0.001 0.132 145 E 0.196 0.226 0.039 0.016 0.006 0.007 0.013 0.078 0.001 0.001 0.418 146 E 0.101 0.045 0.051 0.018 0.007 0.014 0.056 0.011 0.001 0.002 0.695 147 P 0.005 0.003 0.004 0.004 0.001 0.001 0.007 0.001 0.001 0.001 0.974