# TARGET T0373 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0373.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3196 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.001 0.001 0.001 0.996 2 P 0.007 0.012 0.004 0.019 0.005 0.017 0.936 3 T 0.009 0.011 0.019 0.087 0.167 0.091 0.616 4 N 0.008 0.004 0.034 0.152 0.122 0.120 0.560 5 Q 0.005 0.003 0.046 0.544 0.102 0.089 0.211 6 D 0.003 0.001 0.018 0.747 0.035 0.053 0.142 7 L 0.002 0.001 0.008 0.894 0.028 0.019 0.047 8 Q 0.002 0.002 0.005 0.938 0.009 0.011 0.033 9 L 0.002 0.001 0.004 0.969 0.004 0.009 0.013 10 A 0.001 0.001 0.002 0.987 0.002 0.004 0.006 11 A 0.001 0.001 0.002 0.991 0.001 0.005 0.001 12 H 0.001 0.001 0.001 0.991 0.001 0.006 0.001 13 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 14 R 0.001 0.001 0.001 0.997 0.001 0.002 0.001 15 S 0.001 0.001 0.001 0.996 0.001 0.003 0.001 16 Q 0.001 0.001 0.001 0.994 0.001 0.004 0.001 17 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 18 T 0.001 0.001 0.001 0.995 0.001 0.004 0.001 19 T 0.001 0.001 0.001 0.994 0.001 0.005 0.001 20 L 0.001 0.001 0.001 0.992 0.001 0.006 0.001 21 T 0.001 0.001 0.001 0.993 0.001 0.005 0.001 22 R 0.001 0.001 0.001 0.989 0.001 0.009 0.001 23 R 0.001 0.001 0.001 0.986 0.001 0.011 0.002 24 L 0.001 0.001 0.001 0.981 0.001 0.012 0.004 25 R 0.001 0.001 0.004 0.978 0.002 0.011 0.005 26 R 0.001 0.001 0.009 0.963 0.002 0.021 0.004 27 E 0.001 0.001 0.019 0.928 0.003 0.043 0.006 28 A 0.003 0.003 0.026 0.870 0.015 0.064 0.018 29 Q 0.005 0.004 0.051 0.662 0.025 0.200 0.052 30 A 0.005 0.002 0.068 0.425 0.112 0.318 0.071 31 D 0.007 0.002 0.024 0.096 0.357 0.365 0.149 32 P 0.011 0.008 0.021 0.022 0.206 0.364 0.367 33 V 0.032 0.036 0.003 0.008 0.110 0.011 0.799 34 Q 0.034 0.020 0.002 0.014 0.034 0.004 0.891 35 F 0.001 0.001 0.029 0.955 0.002 0.009 0.004 36 S 0.001 0.001 0.014 0.974 0.001 0.009 0.002 37 Q 0.001 0.001 0.005 0.990 0.001 0.002 0.002 38 L 0.001 0.001 0.001 0.997 0.001 0.001 0.001 39 V 0.001 0.001 0.001 0.996 0.001 0.002 0.001 40 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 41 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 42 G 0.001 0.001 0.001 0.997 0.001 0.002 0.001 43 A 0.001 0.001 0.001 0.995 0.001 0.004 0.001 44 I 0.001 0.001 0.002 0.991 0.001 0.005 0.001 45 D 0.001 0.001 0.007 0.948 0.001 0.040 0.002 46 R 0.001 0.001 0.013 0.803 0.007 0.173 0.004 47 L 0.001 0.001 0.010 0.309 0.059 0.581 0.038 48 G 0.002 0.002 0.011 0.014 0.138 0.669 0.165 49 G 0.017 0.006 0.011 0.004 0.390 0.079 0.494 50 D 0.073 0.047 0.006 0.002 0.110 0.042 0.720 51 V 0.092 0.070 0.001 0.002 0.130 0.005 0.700 52 T 0.040 0.027 0.001 0.004 0.027 0.001 0.901 53 P 0.001 0.001 0.011 0.983 0.001 0.003 0.002 54 S 0.001 0.001 0.008 0.988 0.001 0.003 0.001 55 E 0.001 0.001 0.004 0.994 0.001 0.001 0.001 56 L 0.001 0.001 0.002 0.994 0.001 0.002 0.001 57 A 0.001 0.001 0.004 0.982 0.002 0.009 0.002 58 A 0.001 0.001 0.003 0.958 0.002 0.033 0.003 59 A 0.001 0.002 0.014 0.839 0.014 0.101 0.029 60 E 0.002 0.002 0.014 0.457 0.029 0.457 0.040 61 R 0.002 0.003 0.021 0.156 0.087 0.556 0.176 62 M 0.008 0.010 0.010 0.025 0.310 0.025 0.611 63 R 0.010 0.007 0.015 0.025 0.144 0.026 0.773 64 S 0.005 0.005 0.111 0.493 0.132 0.130 0.124 65 S 0.003 0.003 0.081 0.645 0.086 0.103 0.079 66 N 0.007 0.012 0.057 0.728 0.048 0.058 0.090 67 L 0.001 0.001 0.010 0.966 0.003 0.007 0.012 68 A 0.001 0.001 0.006 0.985 0.001 0.003 0.004 69 A 0.001 0.001 0.006 0.987 0.001 0.004 0.002 70 L 0.001 0.001 0.005 0.985 0.001 0.006 0.002 71 L 0.001 0.001 0.001 0.996 0.001 0.002 0.001 72 R 0.001 0.001 0.001 0.997 0.001 0.002 0.001 73 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 74 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 75 E 0.001 0.001 0.001 0.988 0.001 0.009 0.001 76 R 0.001 0.001 0.003 0.835 0.002 0.159 0.001 77 G 0.001 0.001 0.003 0.075 0.006 0.910 0.005 78 G 0.002 0.001 0.004 0.005 0.065 0.852 0.071 79 L 0.124 0.006 0.013 0.003 0.143 0.039 0.671 80 I 0.839 0.011 0.004 0.002 0.027 0.007 0.109 81 V 0.945 0.004 0.001 0.001 0.004 0.001 0.043 82 R 0.971 0.003 0.001 0.001 0.003 0.001 0.022 83 H 0.901 0.002 0.001 0.001 0.015 0.001 0.081 84 A 0.619 0.028 0.001 0.001 0.082 0.004 0.265 85 D 0.090 0.012 0.001 0.001 0.055 0.002 0.841 86 P 0.005 0.001 0.041 0.005 0.091 0.817 0.040 87 Q 0.003 0.002 0.043 0.003 0.067 0.864 0.018 88 D 0.019 0.010 0.126 0.005 0.335 0.406 0.099 89 G 0.048 0.008 0.029 0.003 0.198 0.479 0.235 90 R 0.423 0.027 0.006 0.001 0.094 0.025 0.425 91 R 0.798 0.014 0.002 0.001 0.025 0.004 0.157 92 T 0.937 0.001 0.001 0.001 0.012 0.001 0.048 93 R 0.974 0.001 0.001 0.001 0.002 0.001 0.022 94 V 0.987 0.001 0.001 0.003 0.001 0.001 0.008 95 S 0.968 0.001 0.001 0.009 0.001 0.002 0.019 96 L 0.762 0.009 0.001 0.010 0.007 0.005 0.208 97 S 0.075 0.001 0.001 0.004 0.023 0.004 0.892 98 S 0.004 0.001 0.029 0.627 0.076 0.250 0.012 99 E 0.002 0.001 0.029 0.724 0.015 0.222 0.007 100 G 0.002 0.001 0.034 0.892 0.007 0.044 0.019 101 R 0.003 0.003 0.008 0.953 0.006 0.014 0.014 102 R 0.004 0.002 0.012 0.947 0.005 0.024 0.007 103 N 0.001 0.001 0.014 0.938 0.004 0.036 0.006 104 L 0.002 0.001 0.014 0.912 0.009 0.047 0.014 105 Y 0.002 0.001 0.028 0.776 0.017 0.154 0.022 106 G 0.002 0.001 0.039 0.713 0.016 0.197 0.031 107 N 0.002 0.002 0.025 0.761 0.031 0.088 0.091 108 R 0.001 0.001 0.011 0.884 0.019 0.028 0.056 109 A 0.001 0.001 0.007 0.948 0.012 0.016 0.015 110 K 0.001 0.001 0.006 0.970 0.003 0.012 0.009 111 R 0.001 0.001 0.002 0.987 0.001 0.005 0.004 112 E 0.001 0.001 0.001 0.994 0.001 0.003 0.001 113 E 0.001 0.001 0.001 0.996 0.001 0.003 0.001 114 W 0.001 0.001 0.001 0.993 0.001 0.005 0.001 115 L 0.001 0.001 0.001 0.993 0.001 0.004 0.002 116 V 0.001 0.001 0.002 0.986 0.001 0.009 0.001 117 R 0.001 0.001 0.005 0.954 0.003 0.033 0.005 118 A 0.001 0.001 0.012 0.895 0.005 0.073 0.014 119 M 0.001 0.004 0.020 0.784 0.024 0.130 0.036 120 H 0.001 0.002 0.117 0.474 0.032 0.314 0.059 121 A 0.002 0.001 0.082 0.221 0.108 0.422 0.164 122 C 0.004 0.006 0.066 0.117 0.093 0.362 0.353 123 L 0.002 0.009 0.001 0.009 0.237 0.004 0.738 124 D 0.001 0.005 0.001 0.007 0.022 0.001 0.964 125 E 0.001 0.001 0.003 0.988 0.001 0.007 0.001 126 S 0.001 0.001 0.005 0.989 0.001 0.006 0.001 127 E 0.001 0.001 0.006 0.991 0.001 0.002 0.001 128 R 0.001 0.001 0.001 0.996 0.001 0.002 0.001 129 A 0.001 0.001 0.001 0.991 0.001 0.007 0.001 130 L 0.001 0.001 0.002 0.977 0.001 0.020 0.001 131 L 0.001 0.001 0.004 0.965 0.002 0.024 0.004 132 A 0.001 0.001 0.014 0.945 0.002 0.038 0.001 133 A 0.001 0.001 0.029 0.796 0.002 0.168 0.004 134 A 0.001 0.001 0.023 0.821 0.005 0.140 0.011 135 G 0.001 0.001 0.014 0.894 0.039 0.024 0.027 136 P 0.001 0.001 0.026 0.920 0.007 0.032 0.015 137 L 0.001 0.001 0.013 0.959 0.002 0.023 0.004 138 L 0.001 0.001 0.003 0.987 0.001 0.005 0.002 139 T 0.001 0.001 0.003 0.988 0.001 0.007 0.001 140 R 0.001 0.001 0.003 0.977 0.001 0.019 0.001 141 L 0.001 0.001 0.008 0.951 0.001 0.032 0.007 142 A 0.001 0.001 0.014 0.921 0.005 0.051 0.008 143 Q 0.001 0.001 0.019 0.736 0.010 0.216 0.017 144 F 0.002 0.001 0.032 0.494 0.067 0.293 0.112 145 E 0.005 0.008 0.027 0.252 0.237 0.233 0.237 146 E 0.004 0.007 0.014 0.055 0.048 0.088 0.783 147 P 0.001 0.001 0.001 0.003 0.004 0.003 0.988