# TARGET T0373 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0373.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3196 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.059 0.314 0.409 0.005 0.052 0.020 0.021 0.001 0.114 0.004 0.001 2 P 0.135 0.009 0.721 0.024 0.001 0.061 0.001 0.001 0.002 0.001 0.047 3 T 0.238 0.172 0.339 0.126 0.041 0.044 0.009 0.005 0.019 0.007 0.001 4 N 0.251 0.076 0.256 0.117 0.046 0.090 0.081 0.013 0.055 0.015 0.001 5 Q 0.750 0.020 0.051 0.143 0.004 0.010 0.011 0.004 0.005 0.002 0.001 6 D 0.747 0.018 0.056 0.125 0.004 0.021 0.011 0.006 0.008 0.002 0.001 7 L 0.670 0.054 0.086 0.112 0.007 0.033 0.021 0.006 0.010 0.001 0.001 8 Q 0.807 0.037 0.076 0.023 0.006 0.024 0.012 0.003 0.011 0.002 0.001 9 L 0.972 0.004 0.008 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 10 A 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 H 0.985 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 T 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 T 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 R 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 R 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.970 0.001 0.001 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 R 0.988 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 R 0.988 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 E 0.956 0.001 0.002 0.040 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.868 0.012 0.023 0.078 0.002 0.004 0.004 0.004 0.003 0.001 0.001 29 Q 0.841 0.031 0.055 0.043 0.006 0.009 0.009 0.002 0.002 0.003 0.001 30 A 0.693 0.016 0.052 0.211 0.004 0.011 0.004 0.003 0.003 0.001 0.001 31 D 0.059 0.194 0.354 0.026 0.046 0.029 0.024 0.001 0.265 0.001 0.001 32 P 0.508 0.007 0.278 0.110 0.001 0.053 0.007 0.002 0.004 0.001 0.032 33 V 0.078 0.270 0.501 0.064 0.032 0.041 0.004 0.002 0.007 0.001 0.001 34 Q 0.022 0.096 0.807 0.004 0.013 0.043 0.001 0.001 0.013 0.002 0.001 35 F 0.994 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 S 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 G 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 I 0.983 0.002 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 D 0.970 0.003 0.003 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 R 0.833 0.014 0.012 0.130 0.002 0.004 0.003 0.001 0.002 0.001 0.001 47 L 0.253 0.009 0.033 0.679 0.002 0.004 0.012 0.001 0.007 0.001 0.001 48 G 0.019 0.001 0.012 0.020 0.006 0.004 0.375 0.520 0.003 0.040 0.001 49 G 0.070 0.024 0.100 0.024 0.093 0.002 0.011 0.097 0.002 0.578 0.001 50 D 0.156 0.081 0.395 0.203 0.038 0.054 0.031 0.012 0.013 0.007 0.009 51 V 0.036 0.445 0.418 0.025 0.043 0.023 0.003 0.001 0.004 0.001 0.001 52 T 0.008 0.173 0.718 0.001 0.030 0.039 0.001 0.001 0.031 0.001 0.001 53 P 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 S 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 E 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 A 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 A 0.980 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 A 0.926 0.005 0.005 0.059 0.001 0.002 0.001 0.001 0.001 0.001 0.001 60 E 0.473 0.012 0.028 0.478 0.002 0.002 0.002 0.001 0.002 0.001 0.001 61 R 0.090 0.002 0.008 0.128 0.003 0.015 0.640 0.100 0.011 0.004 0.001 62 M 0.049 0.266 0.548 0.029 0.020 0.057 0.007 0.001 0.020 0.001 0.001 63 R 0.098 0.181 0.436 0.060 0.057 0.110 0.010 0.003 0.037 0.007 0.001 64 S 0.788 0.033 0.082 0.041 0.019 0.009 0.007 0.005 0.005 0.009 0.001 65 S 0.908 0.006 0.025 0.040 0.004 0.005 0.004 0.006 0.001 0.001 0.001 66 N 0.817 0.008 0.017 0.112 0.005 0.023 0.002 0.001 0.014 0.001 0.001 67 L 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 L 0.991 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 L 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 E 0.990 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 R 0.948 0.003 0.004 0.044 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 G 0.251 0.003 0.011 0.664 0.004 0.001 0.021 0.035 0.002 0.008 0.001 78 G 0.017 0.002 0.013 0.009 0.013 0.001 0.454 0.416 0.002 0.073 0.001 79 L 0.083 0.346 0.401 0.048 0.055 0.051 0.003 0.001 0.009 0.001 0.001 80 I 0.014 0.653 0.236 0.007 0.018 0.046 0.001 0.001 0.025 0.001 0.001 81 V 0.020 0.718 0.131 0.016 0.043 0.035 0.001 0.001 0.035 0.001 0.001 82 R 0.023 0.587 0.286 0.009 0.032 0.042 0.003 0.001 0.018 0.001 0.001 83 H 0.012 0.704 0.122 0.006 0.091 0.020 0.002 0.001 0.041 0.001 0.001 84 A 0.060 0.186 0.663 0.018 0.010 0.055 0.001 0.001 0.005 0.001 0.001 85 D 0.002 0.226 0.532 0.001 0.057 0.049 0.001 0.001 0.130 0.001 0.001 86 P 0.971 0.001 0.007 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 Q 0.645 0.006 0.007 0.329 0.002 0.002 0.003 0.002 0.004 0.001 0.001 88 D 0.073 0.016 0.062 0.748 0.005 0.017 0.042 0.002 0.034 0.001 0.001 89 G 0.031 0.003 0.031 0.018 0.008 0.002 0.285 0.588 0.001 0.033 0.001 90 R 0.092 0.296 0.403 0.112 0.051 0.023 0.007 0.003 0.009 0.002 0.001 91 R 0.014 0.598 0.251 0.021 0.078 0.020 0.003 0.001 0.014 0.001 0.001 92 T 0.004 0.853 0.063 0.006 0.056 0.007 0.001 0.001 0.011 0.001 0.001 93 R 0.002 0.762 0.183 0.001 0.019 0.019 0.001 0.001 0.014 0.001 0.001 94 V 0.003 0.790 0.116 0.002 0.014 0.035 0.001 0.001 0.039 0.001 0.001 95 S 0.001 0.770 0.098 0.001 0.034 0.024 0.002 0.001 0.072 0.001 0.001 96 L 0.010 0.189 0.692 0.023 0.008 0.072 0.001 0.001 0.005 0.001 0.001 97 S 0.002 0.109 0.725 0.001 0.127 0.023 0.001 0.001 0.010 0.004 0.001 98 S 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 E 0.970 0.001 0.002 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 G 0.966 0.001 0.003 0.018 0.001 0.001 0.002 0.008 0.001 0.001 0.001 101 R 0.987 0.001 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 R 0.982 0.003 0.004 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 N 0.899 0.005 0.006 0.083 0.001 0.003 0.001 0.001 0.003 0.001 0.001 104 L 0.869 0.017 0.024 0.072 0.003 0.005 0.005 0.001 0.005 0.001 0.001 105 Y 0.871 0.010 0.053 0.051 0.003 0.003 0.005 0.001 0.001 0.003 0.001 106 G 0.709 0.003 0.013 0.090 0.009 0.003 0.030 0.125 0.001 0.017 0.001 107 N 0.572 0.026 0.103 0.226 0.005 0.044 0.008 0.001 0.015 0.001 0.001 108 R 0.848 0.037 0.055 0.036 0.003 0.009 0.005 0.001 0.005 0.001 0.001 109 A 0.945 0.005 0.027 0.011 0.001 0.002 0.003 0.002 0.001 0.002 0.001 110 K 0.958 0.004 0.010 0.020 0.001 0.003 0.001 0.001 0.001 0.001 0.001 111 R 0.975 0.002 0.004 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 E 0.992 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 E 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 W 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 V 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 R 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 A 0.976 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 M 0.963 0.002 0.005 0.023 0.001 0.002 0.002 0.001 0.001 0.001 0.001 120 H 0.830 0.004 0.010 0.145 0.001 0.003 0.003 0.001 0.001 0.001 0.001 121 A 0.669 0.015 0.085 0.199 0.006 0.009 0.009 0.005 0.002 0.001 0.001 122 C 0.179 0.007 0.028 0.589 0.004 0.022 0.135 0.020 0.013 0.003 0.001 123 L 0.007 0.193 0.676 0.021 0.015 0.061 0.009 0.001 0.017 0.001 0.001 124 D 0.003 0.043 0.883 0.001 0.024 0.036 0.001 0.001 0.008 0.003 0.001 125 E 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 126 S 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 E 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 L 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 131 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 A 0.978 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 A 0.859 0.001 0.001 0.138 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 G 0.963 0.001 0.012 0.008 0.001 0.002 0.003 0.007 0.002 0.003 0.001 136 P 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 137 L 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 138 L 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 139 T 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 140 R 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 141 L 0.980 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 142 A 0.963 0.002 0.004 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 143 Q 0.709 0.006 0.010 0.258 0.002 0.003 0.006 0.003 0.001 0.001 0.001 144 F 0.373 0.047 0.154 0.324 0.009 0.030 0.038 0.010 0.012 0.002 0.001 145 E 0.284 0.122 0.147 0.240 0.018 0.089 0.047 0.003 0.049 0.002 0.001 146 E 0.061 0.176 0.459 0.007 0.049 0.039 0.029 0.001 0.170 0.008 0.001 147 P 0.480 0.004 0.397 0.038 0.001 0.032 0.001 0.001 0.001 0.001 0.044