# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a61A 145 4.97e-18 2fbhA 146 2.90e-17 1z91A 147 3.52e-17 1jgsA 138 6.60e-17 a.4.5.28 66683 2fbiA 142 3.91e-16 1lnwA 147 9.37e-16 a.4.5.28 78104 1lj9A 144 2.24e-15 a.4.5.28 78035 2ethA 154 8.14e-15 2fxaA 207 1.24e-11 1p4xA 250 1.30e-10 a.4.5.28,a.4.5.28 87784,87785 1ub9A 100 5.51e-09 a.4.5.28 99159 1z7uA 112 3.01e-08 1on2A 142 3.88e-08 a.4.5.24,a.76.1.1 87103,87104 2fswA 107 1.60e-07 1sfxA 109 3.74e-07 a.4.5.50 105505 1tbxA 99 5.27e-06 a.4.5.48 106748 2f2eA 146 5.51e-06 1mkmA 249 6.75e-06 a.4.5.33,d.110.2.2 79242,79243 2co5A 99 8.41e-06 1sd4A 126 3.59e-05 a.4.5.39 105428 1r1tA 122 3.75e-05 a.4.5.5 104769 1ulyA 192 7.54e-05 1z1dA 103 9.90e-05 2b0lA 102 1.29e-04 1bjaA 95 3.56e-04 1bjaA a.4.5.9 16122 2fu4A 83 4.18e-04 1r1uA 106 4.48e-04 a.4.5.5 104771 2cfxA 144 5.52e-04 1mzbA 136 5.81e-04 a.4.5.42 91497 1u2wA 122 9.90e-04 1yg2A 179 1.33e-03 2g7uA 257 1.44e-03 1qzzA 374 3.46e-03 a.4.5.29,c.66.1.12 96719,96720 1r7jA 95 5.55e-03 a.4.5.49 104836 1b9mA 265 7.36e-03 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1xn7A 78 7.38e-03 1jhfA 202 8.41e-03 a.4.5.2,b.87.1.1 63057,63058 1t6sA 162 8.72e-03 1hw1A 239 1.72e-02 1e2xA a.4.5.6,a.78.1.1 16111,18441 1hw5A 210 1.92e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 1k78A 149 2.02e-02 a.4.1.5,a.4.1.5 68255,68256 1ixcA 294 2.20e-02 a.4.5.37,c.94.1.1 83764,83765 1je8A 82 2.22e-02 a.4.6.2 77108 1sfuA 75 3.21e-02 a.4.5.19 105503 1y0uA 96 4.11e-02 1fp2A 352 5.19e-02 1fpxA a.4.5.29,c.66.1.12 59941,59942 1in6A 334 5.36e-02 1hqcA a.4.5.11,c.37.1.20 62601,62602 1qbjA 81 5.51e-02 1qbjA a.4.5.19 16155 1zljA 78 5.66e-02 2dbbA 151 6.49e-02 1j75A 67 6.82e-02 a.4.5.19 62673 1zybA 232 7.41e-02 1in4A 334 9.37e-02 1hqcA a.4.5.11,c.37.1.20 62597,62598 1xd7A 145 9.65e-02 a.4.5.55 109566 2bgcA 238 1.38e-01 2cg4A 152 1.45e-01 1puoA 170 1.46e-01 a.101.1.1,a.101.1.1 95134,95135 1stzA 338 1.68e-01 a.4.5.51,d.110.2.3 106009,106010 1wi9A 72 1.70e-01 1t98A 287 2.59e-01 2esnA 310 3.25e-01 1bia 321 3.58e-01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1opc 110 4.29e-01 1opc a.4.6.1 16231 2cu6A 103 6.03e-01 1lvaA 258 6.05e-01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ev7A 317 7.00e-01 1ev7B c.52.1.9 33315 1mai 131 7.23e-01 1mai b.55.1.1 26951 2cohA 202 7.34e-01 1xmkA 79 7.46e-01 1r71A 178 7.65e-01 a.4.14.1 104823 1wj5A 120 8.14e-01 1hlvA 131 8.27e-01 a.4.1.7,a.4.1.7 65854,65855 1u5tA 233 1.19e+00 a.4.5.54,a.4.5.54 107684,107685 2tct 207 1.26e+00 2tct a.4.1.9,a.121.1.1 16063,19240 1mgtA 174 1.37e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1aisB 200 1.51e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1fy7A 278 1.57e+00 1fy7A d.108.1.1 40817 1ys7A 233 1.77e+00 1m7kA 99 1.95e+00 a.7.7.1 74573 1whzA 70 1.98e+00 1kn6A 90 1.99e+00 d.58.3.3 72770 1xsvA 113 2.01e+00 1sgoA 139 2.17e+00 d.82.3.1 98857 1u5tB 169 2.38e+00 a.4.5.54,a.4.5.54 107686,107687 1khyA 148 2.41e+00 a.174.1.1 77410 1iab 200 2.41e+00 1iae d.92.1.8 40312 1ldjA 760 2.47e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 2bgsA 344 2.56e+00 1yqyA 523 2.78e+00 1utxA 66 2.86e+00 a.35.1.3 108034 1zkrA 153 2.92e+00 2g7gA 213 3.04e+00 1p2fA 220 3.19e+00 a.4.6.1,c.23.1.1 87720,87721 2cujA 108 3.38e+00 1b24A 188 3.64e+00 1b24A d.95.2.1,d.95.2.1 40573,40574 1k3yA 221 3.77e+00 a.45.1.1,c.47.1.5 77245,77246 1z67A 135 4.06e+00 2bx9A 53 4.13e+00 1e19A 314 4.24e+00 1b7bA c.73.1.1 34967 1zk8A 183 4.26e+00 1uyrA 737 4.30e+00 c.14.1.4,c.14.1.4 100188,100189 1twfF 155 4.55e+00 1gxqA 106 4.78e+00 a.4.6.1 70721 1t95A 240 5.50e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1xb4A 202 5.66e+00 1ihkA 174 5.99e+00 1bfg b.42.1.1 62384 1wdvA 152 6.07e+00 1o6sB 105 6.41e+00 b.1.6.1 81096 1ka2A 499 6.42e+00 d.92.1.5 77305 1gk9A 260 6.69e+00 d.153.1.2 65246 1wzdA 215 6.75e+00 1uwzA 136 6.79e+00 c.97.1.1 108081 1ufmA 84 6.86e+00 a.4.5.47 107816 1zvnA 99 7.44e+00 1fp1D 372 7.50e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 1b0nA 111 7.57e+00 1b0nA a.34.1.1,a.35.1.3 17001,17064 1w2xA 758 7.89e+00 c.14.1.4,c.14.1.4 109134,109135 2b5aA 77 7.98e+00 2fnaA 357 8.15e+00 1rr7A 129 8.23e+00 a.4.1.14 105075 1d2fA 390 8.49e+00 1d2fA c.67.1.3 34411 8rucI 123 9.11e+00 1rboC d.73.1.1 39629 1k9uA 78 9.24e+00 a.39.1.10 84348 1iw0A 215 1.00e+01 a.132.1.1 83720 1np6A 174 1.01e+01 c.37.1.10 85954 1j1vA 94 1.09e+01 a.4.12.2 83981 1zx4A 192 1.14e+01 1w9iA 770 1.16e+01 1uhnA 189 1.18e+01 a.39.1.5 99399 1zh5A 195 1.19e+01 1bg4 302 1.21e+01 1taxA c.1.8.3 28806 1bm9A 122 1.24e+01 1bm9A a.4.5.7 16116 1urvA 190 1.27e+01 1rm6A 769 1.29e+01 2g0dA 409 1.30e+01 2givA 295 1.30e+01 1eswA 500 1.32e+01 1cwyA c.1.8.1 59500 1fseA 74 1.38e+01 1fseA a.4.6.2 60000 1jftA 340 1.40e+01 a.35.1.5,c.93.1.1 66652,66653 1fehA 574 1.43e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1lw7A 365 1.46e+01 c.26.1.3,c.37.1.1 74295,74296 1tuoA 464 1.47e+01 1zxkA 98 1.49e+01 2cq2A 114 1.53e+01 1tvlA 454 1.54e+01 c.1.16.4 107366 1wm1A 317 1.56e+01 c.69.1.7 109405 1mj5A 302 1.56e+01 c.69.1.8 91285 1qhlA 227 1.56e+01 1qhlA c.37.1.12 32382 1ug3A 339 1.62e+01 1y88A 199 1.63e+01 1es9A 232 1.71e+01 1wab c.23.10.3 31340 1gtvA 214 1.74e+01 c.37.1.1 70537 1zxtA 76 1.77e+01 1w9cA 321 1.82e+01 1wpbA 172 1.91e+01 1o82A 70 1.98e+01 a.64.2.1 92630 1zs9A 261 2.02e+01 1kq3A 376 2.04e+01 e.22.1.2 68790 1nb8A 353 2.08e+01 d.3.1.9 80385 2ghjA 118 2.09e+01 1eo1A 124 2.12e+01 1eo1A c.55.5.1 33739 1y9uA 323 2.12e+01 1v6tA 255 2.15e+01 1vf1A 229 2.19e+01 1xdnA 277 2.26e+01 1te0A 318 2.28e+01 1x0rA 249 2.35e+01 1kgsA 225 2.41e+01 a.4.6.1,c.23.1.1 68596,68597 1qysA 106 2.41e+01 k.41.1.1 96603 1wi5A 119 2.42e+01 1co6A 107 2.50e+01 1ycc a.3.1.1 15894 1tuzA 118 2.52e+01 1ufaA 520 2.64e+01 a.8.3.3,c.6.2.4 99329,99330 1b00A 127 2.68e+01 3chy c.23.1.1 31122 1v38A 78 2.75e+01 a.60.1.2 100280 1zsxA 347 2.76e+01 1qgoA 264 2.76e+01 1qgoA c.92.1.2 35596 1m2tA 254 2.77e+01 d.165.1.1 84761 1mr3F 181 2.78e+01 c.37.1.8 79422 1o8vA 134 2.82e+01 b.60.1.2 86680 1aquA 297 2.83e+01 1aquA c.37.1.5 31942 2sli 679 2.84e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1res 43 2.85e+01 1ret a.4.1.2 16023 2cunA 410 2.97e+01 1qusA 322 3.05e+01 1ltm d.2.1.6 36991 1fgyA 127 3.06e+01 1faoA b.55.1.1 26976 2g3bA 208 3.07e+01 2fytA 340 3.09e+01 3tmkA 216 3.09e+01 3tmkA c.37.1.1 31920 1g4mA 393 3.16e+01 b.1.18.11,b.1.18.11 65143,65144 1exbA 332 3.17e+01 1qrqA c.1.7.1 28666 1f3lA 321 3.19e+01 1g6q2 c.66.1.6 59630 2fq3A 104 3.25e+01 1g8iA 190 3.29e+01 1rec a.39.1.5 60363 1g6uA 48 3.30e+01 1g6uA k.9.1.1 46425 1r3dA 264 3.30e+01 1jvr 137 3.31e+01 1jvr a.61.1.2 18132 1wmqA 147 3.37e+01 1ctf 74 3.51e+01 1ctf d.45.1.1 38759 2cw8A 537 3.54e+01 1ecrA 309 3.59e+01 1ecrA e.2.1.1 42678 1xxaA 78 3.60e+01 1xxaA d.74.2.1 39700 1l6pA 125 3.60e+01 b.1.17.1 73626 1gl2D 65 3.62e+01 h.1.15.1 65281 1fxxA 482 3.62e+01 1fxxA c.55.3.5 33726 1orjA 130 3.64e+01 a.24.19.1 93456 2fq4A 192 3.64e+01 1whsA 255 3.64e+01 1ivyA c.69.1.5 34649 1w2lA 99 3.64e+01 1yc5A 246 3.69e+01 2cmxA 118 3.77e+01 1v2zA 111 3.93e+01 a.186.1.1 108300 1mspA 126 3.98e+01 1mspA b.1.11.2 22333 1c7qA 445 3.98e+01 2pgi c.80.1.2 35307 2a6cA 83 3.99e+01 1qipA 183 3.99e+01 1qipA d.32.1.1 38470 1q4rA 112 4.00e+01 d.58.4.4 95823 1rhcA 330 4.03e+01 c.1.16.3 97468 1b0b 142 4.11e+01 2fal a.1.1.2 15010 1fnnA 389 4.14e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1vqoP 149 4.33e+01 1vjoA 393 4.37e+01 c.67.1.3 100827 2fcwA 109 4.42e+01 1jhgA 101 4.43e+01 1jhgA a.4.12.1 19009 1cdzA 96 4.46e+01 1cdzA c.15.1.1 30925 1regX 122 4.49e+01 1regX d.58.27.1 39406 1vm0A 130 4.53e+01 d.68.6.2 108873 1u02A 239 4.61e+01 c.108.1.15 107538 1h3fA 432 4.64e+01 c.26.1.1,d.66.1.4 76631,76632 2b9hA 353 4.68e+01 1n6zA 105 4.68e+01 d.263.1.1 85369 1gs5A 258 4.74e+01 c.73.1.2 70395 1gtfA 74 4.74e+01 b.82.5.1 70460 1di6A 195 4.84e+01 1di6A c.57.1.1 33863 1s21A 206 4.90e+01 d.166.1.4 105222 1xdzA 240 4.93e+01 1jr8A 117 4.95e+01 a.24.15.1 67115 1neq 74 4.98e+01 1neq a.35.1.2 17063 2aaoA 166 5.03e+01 2dc3A 193 5.05e+01 1nhkL 144 5.05e+01 1npk d.58.6.1 39142 1isiA 265 5.10e+01 e.4.1.1 71394 1hnjA 317 5.16e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1ui5A 215 5.29e+01 a.4.1.9,a.121.1.1 107856,107857 1rzsA 61 5.30e+01 a.35.1.2 105139 1rktA 205 5.38e+01 a.4.1.9,a.121.1.1 97623,97624 1wucA 250 5.43e+01 2b7aA 293 5.48e+01 1x0hA 112 5.55e+01 1mpgA 282 5.56e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1m4iA 181 5.56e+01 d.108.1.1 74457 1y7yA 74 5.60e+01 1or7A 194 5.61e+01 a.4.13.2,a.177.1.1 87332,87333 1tfzA 424 5.68e+01 d.32.1.3,d.32.1.3 106886,106887 1nlfA 279 5.70e+01 c.37.1.11 85850 1k2eA 156 5.72e+01 d.113.1.1 72010 1twfB 1224 5.73e+01 2cro 71 5.74e+01 1r69 a.35.1.2 17038 1eejA 216 5.78e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1esc 306 5.78e+01 1esc c.23.10.1 31334 2cjpA 328 5.80e+01 1vimA 200 5.84e+01 c.80.1.3 100758 2bcqA 335 5.86e+01 1d9uA 154 5.93e+01 1am7A d.2.1.4 59111 2gfnA 209 5.98e+01 1tns 76 6.02e+01 1qpmA a.6.1.7 16228 1pea 385 6.13e+01 1pea c.93.1.1 35662 4dfrA 159 6.14e+01 1vdrA c.71.1.1 34822 1r69 69 6.16e+01 1r69 a.35.1.2 17028 1b79A 119 6.18e+01 1b79A a.81.1.1 18451 2gmfA 127 6.22e+01 2gmfA a.26.1.2 16849 1mw7A 240 6.29e+01 e.39.1.1 79557 1ywxA 102 6.30e+01 1yqzA 438 6.32e+01 2bbkL 125 6.42e+01 2bbkL g.21.1.1 44882 1wf3A 301 6.47e+01 1q5dA 419 6.54e+01 a.104.1.1 95891 1t07A 94 6.55e+01 d.279.1.1 106196 1g24A 211 6.66e+01 1g24A d.166.1.1 42270 1nrwA 288 6.76e+01 c.108.1.10 86128 1z3eA 132 6.79e+01 1guxB 152 6.80e+01 1guxB a.74.1.3 18389 1wvfA 520 6.81e+01 1zj6A 187 6.85e+01 2gkpA 167 6.87e+01 1q0pA 223 6.88e+01 c.62.1.1 95507 1fjrA 195 6.90e+01 1fjrA b.102.1.1 59855 2f2hA 773 6.90e+01 1mr1C 99 6.93e+01 d.217.1.2 79420 1t56A 216 6.94e+01 a.4.1.9,a.121.1.1 106428,106429 1fjgQ 105 6.95e+01 1fjfQ b.40.4.5 25352 1htwA 158 6.98e+01 c.37.1.18 71083 1zd9A 188 6.99e+01 1ohlA 342 7.04e+01 c.1.10.3 87035 1kqfB 294 7.10e+01 d.58.1.5,f.23.22.1 75900,75901 2ex0A 399 7.11e+01 1kopA 223 7.47e+01 2cba b.74.1.1 27966 1pufB 73 7.51e+01 a.4.1.1 95132 1hlb 158 7.57e+01 1hlb a.1.1.2 15625 1nziA 159 7.58e+01 b.23.1.1,g.3.11.1 86449,86450 2cqeA 98 7.61e+01 1vjlA 164 7.70e+01 d.257.1.1 100822 1wekA 217 7.71e+01 1hgxA 183 7.74e+01 1tc1A c.61.1.1 34027 1wu7A 434 7.77e+01 1gheA 177 7.80e+01 d.108.1.1 76222 1hw7A 255 7.85e+01 1i7fA d.193.1.1 61297 2f1rA 171 7.86e+01 2bo3A 94 7.87e+01 1zuwA 272 7.91e+01 1fmjA 351 7.96e+01 c.37.1.5 59879 2d7nA 93 8.16e+01 1l3lA 234 8.21e+01 a.4.6.2,d.110.5.1 73541,73542 2rslA 140 8.25e+01 2rslA c.53.1.1 33345 1udxA 416 8.25e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pq1A 196 8.26e+01 f.1.4.1 94986 1gycA 499 8.27e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1x6iA 91 8.33e+01 1ta0A 197 8.41e+01 c.108.1.16 106729 1f7cA 231 8.51e+01 1f7cA a.116.1.1 19107 1j5uA 136 8.54e+01 d.208.1.1 71584 1f7uA 607 8.54e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2fkiA 126 8.68e+01 1lmb3 92 8.72e+01 1lmb3 1h5uA 842 8.94e+01 1a8i c.87.1.4 60655 1nnwA 252 8.99e+01 d.159.1.5 80674 2aukA 190 9.00e+01