# TARGET T0373 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0373.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2372 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.008 0.005 0.003 0.005 0.117 0.862 2 P 0.010 0.012 0.014 0.018 0.202 0.744 3 T 0.005 0.012 0.029 0.046 0.268 0.640 4 N 0.004 0.010 0.063 0.169 0.329 0.424 5 Q 0.002 0.004 0.072 0.615 0.152 0.156 6 D 0.003 0.002 0.021 0.810 0.060 0.104 7 L 0.001 0.001 0.006 0.970 0.011 0.012 8 Q 0.001 0.001 0.003 0.983 0.005 0.007 9 L 0.001 0.001 0.002 0.991 0.003 0.003 10 A 0.001 0.001 0.001 0.993 0.002 0.003 11 A 0.001 0.001 0.001 0.997 0.001 0.001 12 H 0.001 0.001 0.001 0.997 0.001 0.001 13 L 0.001 0.001 0.001 0.998 0.001 0.001 14 R 0.001 0.001 0.001 0.999 0.001 0.001 15 S 0.001 0.001 0.001 0.999 0.001 0.001 16 Q 0.001 0.001 0.001 0.999 0.001 0.001 17 V 0.001 0.001 0.001 0.999 0.001 0.001 18 T 0.001 0.001 0.001 0.999 0.001 0.001 19 T 0.001 0.001 0.001 0.999 0.001 0.001 20 L 0.001 0.001 0.001 0.999 0.001 0.001 21 T 0.001 0.001 0.001 0.997 0.001 0.001 22 R 0.001 0.001 0.001 0.997 0.001 0.001 23 R 0.001 0.001 0.001 0.995 0.002 0.002 24 L 0.001 0.001 0.002 0.993 0.002 0.004 25 R 0.001 0.001 0.005 0.985 0.004 0.005 26 R 0.001 0.001 0.008 0.983 0.005 0.004 27 E 0.001 0.001 0.009 0.975 0.007 0.008 28 A 0.001 0.001 0.013 0.936 0.025 0.025 29 Q 0.001 0.003 0.025 0.598 0.180 0.193 30 A 0.002 0.003 0.038 0.178 0.430 0.350 31 D 0.002 0.002 0.034 0.060 0.505 0.397 32 P 0.004 0.005 0.023 0.016 0.337 0.615 33 V 0.012 0.027 0.004 0.018 0.184 0.754 34 Q 0.008 0.010 0.001 0.034 0.059 0.888 35 F 0.001 0.001 0.005 0.990 0.001 0.003 36 S 0.001 0.001 0.003 0.996 0.001 0.001 37 Q 0.001 0.001 0.002 0.998 0.001 0.001 38 L 0.001 0.001 0.001 0.999 0.001 0.001 39 V 0.001 0.001 0.001 0.999 0.001 0.001 40 V 0.001 0.001 0.001 0.999 0.001 0.001 41 L 0.001 0.001 0.001 0.999 0.001 0.001 42 G 0.001 0.001 0.001 0.998 0.001 0.001 43 A 0.001 0.001 0.003 0.995 0.001 0.001 44 I 0.001 0.001 0.003 0.995 0.001 0.001 45 D 0.001 0.001 0.006 0.987 0.003 0.004 46 R 0.001 0.001 0.010 0.952 0.015 0.022 47 L 0.001 0.002 0.010 0.859 0.041 0.088 48 G 0.001 0.002 0.007 0.036 0.186 0.768 49 G 0.001 0.001 0.001 0.001 0.113 0.885 50 D 0.041 0.026 0.006 0.004 0.162 0.761 51 V 0.052 0.073 0.001 0.001 0.079 0.793 52 T 0.035 0.020 0.001 0.005 0.041 0.899 53 P 0.001 0.001 0.012 0.971 0.004 0.011 54 S 0.001 0.001 0.007 0.991 0.002 0.001 55 E 0.001 0.001 0.007 0.989 0.002 0.001 56 L 0.001 0.001 0.006 0.984 0.005 0.003 57 A 0.001 0.001 0.005 0.985 0.005 0.003 58 A 0.002 0.001 0.008 0.965 0.011 0.012 59 A 0.004 0.002 0.017 0.905 0.045 0.027 60 E 0.006 0.004 0.030 0.698 0.152 0.111 61 R 0.006 0.004 0.029 0.120 0.378 0.463 62 M 0.017 0.036 0.007 0.083 0.306 0.551 63 R 0.009 0.009 0.002 0.067 0.066 0.847 64 S 0.002 0.001 0.009 0.909 0.028 0.052 65 S 0.002 0.001 0.011 0.960 0.016 0.011 66 N 0.003 0.001 0.010 0.969 0.009 0.008 67 L 0.001 0.001 0.003 0.992 0.002 0.002 68 A 0.001 0.001 0.002 0.994 0.002 0.002 69 A 0.001 0.001 0.003 0.994 0.002 0.001 70 L 0.001 0.001 0.002 0.993 0.002 0.002 71 L 0.001 0.001 0.001 0.997 0.001 0.001 72 R 0.001 0.001 0.002 0.996 0.002 0.001 73 E 0.001 0.001 0.003 0.993 0.003 0.001 74 L 0.001 0.001 0.009 0.978 0.010 0.003 75 E 0.001 0.001 0.024 0.950 0.021 0.004 76 R 0.001 0.001 0.023 0.921 0.036 0.018 77 G 0.004 0.002 0.028 0.494 0.177 0.296 78 G 0.010 0.001 0.005 0.008 0.147 0.831 79 L 0.302 0.013 0.004 0.002 0.120 0.559 80 I 0.858 0.009 0.002 0.001 0.033 0.096 81 V 0.895 0.004 0.002 0.001 0.026 0.072 82 R 0.767 0.011 0.002 0.001 0.049 0.170 83 H 0.414 0.018 0.005 0.001 0.179 0.384 84 A 0.275 0.040 0.004 0.001 0.226 0.454 85 D 0.059 0.020 0.002 0.001 0.595 0.323 86 P 0.011 0.004 0.066 0.017 0.892 0.010 87 Q 0.009 0.002 0.046 0.011 0.921 0.011 88 D 0.008 0.005 0.048 0.012 0.912 0.014 89 G 0.070 0.023 0.013 0.010 0.707 0.178 90 R 0.313 0.041 0.010 0.023 0.202 0.411 91 R 0.661 0.014 0.004 0.021 0.142 0.158 92 T 0.873 0.002 0.001 0.012 0.034 0.078 93 R 0.976 0.001 0.001 0.006 0.005 0.012 94 V 0.988 0.001 0.001 0.006 0.002 0.004 95 S 0.965 0.001 0.001 0.020 0.003 0.010 96 L 0.796 0.006 0.001 0.022 0.024 0.151 97 S 0.077 0.002 0.001 0.016 0.083 0.820 98 S 0.009 0.001 0.039 0.743 0.112 0.097 99 E 0.002 0.001 0.026 0.917 0.043 0.011 100 G 0.002 0.001 0.026 0.930 0.033 0.007 101 R 0.007 0.001 0.018 0.942 0.022 0.010 102 R 0.004 0.001 0.009 0.965 0.013 0.007 103 N 0.002 0.001 0.011 0.963 0.014 0.010 104 L 0.003 0.001 0.021 0.917 0.031 0.028 105 Y 0.003 0.001 0.036 0.887 0.043 0.030 106 G 0.003 0.001 0.051 0.823 0.062 0.059 107 N 0.004 0.004 0.024 0.525 0.113 0.329 108 R 0.003 0.002 0.018 0.605 0.085 0.288 109 A 0.001 0.001 0.016 0.919 0.028 0.035 110 K 0.001 0.001 0.014 0.952 0.018 0.014 111 R 0.002 0.001 0.008 0.964 0.013 0.013 112 E 0.001 0.001 0.002 0.977 0.006 0.013 113 E 0.001 0.001 0.001 0.996 0.001 0.002 114 W 0.001 0.001 0.001 0.995 0.001 0.003 115 L 0.001 0.001 0.001 0.998 0.001 0.001 116 V 0.001 0.001 0.001 0.998 0.001 0.001 117 R 0.001 0.001 0.001 0.998 0.001 0.001 118 A 0.001 0.001 0.002 0.994 0.002 0.002 119 M 0.001 0.001 0.003 0.988 0.004 0.004 120 H 0.001 0.001 0.014 0.957 0.020 0.007 121 A 0.001 0.001 0.019 0.853 0.065 0.062 122 C 0.002 0.003 0.011 0.117 0.180 0.687 123 L 0.004 0.026 0.002 0.025 0.193 0.749 124 D 0.003 0.003 0.001 0.004 0.037 0.953 125 E 0.001 0.001 0.014 0.979 0.003 0.004 126 S 0.001 0.001 0.013 0.985 0.001 0.001 127 E 0.001 0.001 0.006 0.992 0.001 0.001 128 R 0.001 0.001 0.001 0.998 0.001 0.001 129 A 0.001 0.001 0.001 0.999 0.001 0.001 130 L 0.001 0.001 0.001 0.999 0.001 0.001 131 L 0.001 0.001 0.001 0.999 0.001 0.001 132 A 0.001 0.001 0.001 0.997 0.001 0.001 133 A 0.001 0.001 0.001 0.997 0.001 0.001 134 A 0.001 0.001 0.001 0.989 0.002 0.008 135 G 0.001 0.001 0.008 0.894 0.034 0.063 136 P 0.001 0.001 0.024 0.896 0.042 0.037 137 L 0.001 0.001 0.019 0.945 0.021 0.014 138 L 0.001 0.001 0.007 0.982 0.006 0.004 139 T 0.001 0.001 0.006 0.990 0.003 0.001 140 R 0.001 0.001 0.003 0.993 0.002 0.001 141 L 0.001 0.001 0.003 0.991 0.003 0.002 142 A 0.001 0.001 0.006 0.980 0.006 0.007 143 Q 0.001 0.001 0.011 0.942 0.018 0.028 144 F 0.001 0.003 0.018 0.469 0.126 0.383 145 E 0.002 0.007 0.008 0.129 0.174 0.681 146 E 0.002 0.003 0.003 0.014 0.171 0.807 147 P 0.002 0.002 0.008 0.014 0.175 0.799