# TARGET T0373 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0373.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2372 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.011 0.883 0.001 0.001 0.002 0.001 0.001 0.001 0.089 0.005 0.003 0.004 2 P 0.001 0.013 0.936 0.001 0.002 0.002 0.001 0.001 0.001 0.028 0.014 0.001 0.003 3 T 0.001 0.019 0.775 0.001 0.010 0.018 0.001 0.001 0.001 0.125 0.050 0.001 0.002 4 N 0.001 0.005 0.542 0.001 0.042 0.189 0.001 0.001 0.001 0.152 0.067 0.001 0.001 5 Q 0.001 0.002 0.095 0.001 0.077 0.694 0.001 0.001 0.001 0.050 0.080 0.001 0.001 6 D 0.001 0.001 0.051 0.001 0.028 0.866 0.001 0.001 0.001 0.017 0.036 0.001 0.001 7 L 0.001 0.001 0.018 0.001 0.010 0.947 0.001 0.001 0.001 0.013 0.010 0.001 0.001 8 Q 0.001 0.002 0.015 0.001 0.004 0.963 0.001 0.001 0.001 0.004 0.010 0.001 0.001 9 L 0.001 0.001 0.010 0.001 0.003 0.970 0.001 0.001 0.001 0.003 0.012 0.001 0.001 10 A 0.001 0.001 0.005 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.003 0.001 0.001 11 A 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 H 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 R 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 S 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 17 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 18 T 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 19 T 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 20 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 21 T 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 22 R 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 23 R 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 24 L 0.001 0.001 0.003 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.012 0.001 0.001 25 R 0.001 0.001 0.010 0.001 0.007 0.961 0.001 0.001 0.001 0.007 0.015 0.001 0.001 26 R 0.001 0.001 0.005 0.001 0.010 0.943 0.001 0.001 0.001 0.003 0.037 0.001 0.001 27 E 0.001 0.001 0.007 0.001 0.015 0.914 0.001 0.001 0.001 0.004 0.059 0.001 0.001 28 A 0.001 0.002 0.021 0.001 0.029 0.851 0.001 0.001 0.001 0.019 0.076 0.001 0.001 29 Q 0.001 0.005 0.046 0.001 0.046 0.682 0.001 0.001 0.001 0.022 0.194 0.001 0.001 30 A 0.001 0.004 0.083 0.001 0.068 0.573 0.001 0.001 0.001 0.036 0.235 0.001 0.001 31 D 0.001 0.003 0.151 0.001 0.023 0.103 0.001 0.001 0.001 0.328 0.390 0.001 0.001 32 P 0.001 0.003 0.202 0.001 0.012 0.007 0.001 0.001 0.001 0.064 0.709 0.001 0.001 33 V 0.001 0.040 0.773 0.001 0.001 0.003 0.001 0.001 0.005 0.158 0.009 0.007 0.003 34 Q 0.001 0.031 0.854 0.001 0.001 0.008 0.001 0.001 0.006 0.080 0.005 0.002 0.013 35 F 0.001 0.002 0.035 0.001 0.014 0.895 0.001 0.001 0.001 0.021 0.031 0.001 0.001 36 S 0.001 0.001 0.011 0.001 0.013 0.953 0.001 0.001 0.001 0.005 0.016 0.001 0.001 37 Q 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 G 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 43 A 0.001 0.001 0.002 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.010 0.001 0.001 44 I 0.001 0.001 0.007 0.001 0.006 0.966 0.001 0.001 0.001 0.004 0.015 0.001 0.001 45 D 0.001 0.002 0.007 0.001 0.015 0.916 0.001 0.001 0.001 0.005 0.052 0.001 0.002 46 R 0.001 0.002 0.011 0.001 0.021 0.745 0.001 0.001 0.001 0.013 0.205 0.001 0.001 47 L 0.001 0.007 0.197 0.001 0.013 0.255 0.001 0.001 0.002 0.193 0.330 0.001 0.002 48 G 0.001 0.006 0.225 0.001 0.016 0.021 0.001 0.001 0.001 0.139 0.590 0.001 0.001 49 G 0.001 0.007 0.280 0.001 0.017 0.009 0.001 0.001 0.004 0.367 0.311 0.002 0.003 50 D 0.001 0.037 0.334 0.001 0.011 0.004 0.001 0.001 0.010 0.454 0.139 0.002 0.009 51 V 0.001 0.080 0.483 0.001 0.001 0.002 0.001 0.001 0.011 0.401 0.010 0.011 0.003 52 T 0.001 0.040 0.869 0.001 0.001 0.003 0.001 0.001 0.003 0.075 0.001 0.001 0.008 53 P 0.001 0.001 0.005 0.001 0.011 0.971 0.001 0.001 0.001 0.002 0.011 0.001 0.001 54 S 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 A 0.001 0.001 0.001 0.001 0.002 0.988 0.001 0.001 0.001 0.001 0.009 0.001 0.001 59 A 0.001 0.001 0.001 0.001 0.003 0.957 0.001 0.001 0.001 0.001 0.037 0.001 0.001 60 E 0.001 0.001 0.003 0.001 0.006 0.592 0.001 0.001 0.001 0.005 0.393 0.001 0.001 61 R 0.001 0.001 0.025 0.001 0.006 0.097 0.001 0.001 0.001 0.015 0.855 0.001 0.001 62 M 0.001 0.015 0.682 0.001 0.011 0.069 0.001 0.001 0.002 0.153 0.064 0.001 0.002 63 R 0.001 0.012 0.654 0.001 0.018 0.059 0.001 0.001 0.004 0.204 0.047 0.001 0.002 64 S 0.001 0.002 0.156 0.001 0.089 0.571 0.001 0.001 0.003 0.070 0.106 0.001 0.001 65 S 0.001 0.003 0.056 0.001 0.112 0.589 0.001 0.001 0.004 0.048 0.187 0.001 0.001 66 N 0.001 0.008 0.071 0.001 0.080 0.686 0.001 0.001 0.003 0.031 0.118 0.001 0.001 67 L 0.001 0.002 0.015 0.001 0.009 0.947 0.001 0.001 0.002 0.004 0.020 0.001 0.001 68 A 0.001 0.001 0.006 0.001 0.002 0.984 0.001 0.001 0.001 0.003 0.005 0.001 0.001 69 A 0.001 0.001 0.004 0.001 0.001 0.990 0.001 0.001 0.001 0.002 0.003 0.001 0.001 70 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 75 E 0.001 0.001 0.003 0.001 0.002 0.943 0.001 0.001 0.001 0.002 0.050 0.001 0.001 76 R 0.001 0.001 0.003 0.001 0.004 0.536 0.001 0.001 0.001 0.002 0.455 0.001 0.001 77 G 0.001 0.001 0.003 0.001 0.001 0.037 0.001 0.001 0.001 0.008 0.951 0.001 0.001 78 G 0.001 0.001 0.042 0.001 0.001 0.003 0.001 0.001 0.001 0.033 0.919 0.001 0.001 79 L 0.001 0.018 0.769 0.001 0.004 0.005 0.001 0.001 0.045 0.070 0.019 0.018 0.050 80 I 0.026 0.022 0.203 0.012 0.001 0.001 0.036 0.001 0.152 0.041 0.007 0.110 0.388 81 V 0.056 0.004 0.091 0.015 0.001 0.001 0.039 0.001 0.091 0.007 0.002 0.627 0.064 82 R 0.038 0.003 0.053 0.003 0.001 0.001 0.019 0.001 0.059 0.014 0.001 0.019 0.787 83 H 0.023 0.002 0.212 0.028 0.001 0.001 0.008 0.001 0.050 0.025 0.003 0.607 0.041 84 A 0.056 0.023 0.104 0.001 0.001 0.001 0.008 0.001 0.010 0.043 0.002 0.030 0.722 85 D 0.002 0.042 0.754 0.002 0.001 0.001 0.001 0.001 0.003 0.046 0.001 0.060 0.089 86 P 0.001 0.001 0.031 0.001 0.107 0.023 0.001 0.001 0.001 0.015 0.818 0.001 0.003 87 Q 0.001 0.002 0.005 0.001 0.045 0.006 0.001 0.001 0.001 0.019 0.918 0.001 0.003 88 D 0.001 0.003 0.031 0.004 0.120 0.008 0.001 0.001 0.001 0.039 0.783 0.008 0.004 89 G 0.002 0.013 0.269 0.008 0.058 0.005 0.001 0.001 0.001 0.262 0.352 0.005 0.023 90 R 0.026 0.023 0.434 0.038 0.039 0.003 0.004 0.001 0.002 0.101 0.103 0.081 0.146 91 R 0.114 0.005 0.052 0.010 0.003 0.001 0.012 0.001 0.001 0.021 0.005 0.020 0.756 92 T 0.409 0.001 0.046 0.025 0.001 0.001 0.025 0.001 0.002 0.007 0.001 0.450 0.034 93 R 0.450 0.001 0.012 0.002 0.001 0.001 0.085 0.002 0.007 0.002 0.001 0.042 0.396 94 V 0.791 0.001 0.005 0.013 0.001 0.001 0.064 0.002 0.003 0.001 0.001 0.086 0.035 95 S 0.738 0.001 0.006 0.001 0.001 0.001 0.088 0.002 0.004 0.001 0.001 0.078 0.080 96 L 0.483 0.003 0.071 0.002 0.001 0.001 0.057 0.004 0.013 0.007 0.001 0.084 0.272 97 S 0.075 0.005 0.511 0.007 0.003 0.020 0.007 0.002 0.021 0.047 0.010 0.085 0.207 98 S 0.001 0.001 0.036 0.001 0.044 0.745 0.001 0.001 0.002 0.033 0.129 0.003 0.004 99 E 0.001 0.002 0.012 0.001 0.041 0.805 0.001 0.001 0.001 0.022 0.112 0.002 0.002 100 G 0.001 0.001 0.013 0.001 0.018 0.915 0.001 0.001 0.001 0.012 0.038 0.001 0.001 101 R 0.001 0.001 0.007 0.001 0.005 0.978 0.001 0.001 0.001 0.002 0.005 0.001 0.001 102 R 0.001 0.001 0.005 0.001 0.007 0.980 0.001 0.001 0.001 0.001 0.004 0.001 0.001 103 N 0.001 0.001 0.007 0.001 0.009 0.973 0.001 0.001 0.001 0.002 0.007 0.001 0.001 104 L 0.001 0.001 0.010 0.001 0.010 0.962 0.001 0.001 0.001 0.004 0.012 0.001 0.001 105 Y 0.001 0.001 0.009 0.001 0.009 0.907 0.001 0.001 0.001 0.005 0.067 0.001 0.001 106 G 0.001 0.001 0.017 0.001 0.010 0.810 0.001 0.001 0.001 0.008 0.153 0.001 0.001 107 N 0.001 0.002 0.109 0.001 0.009 0.787 0.001 0.001 0.001 0.032 0.059 0.001 0.001 108 R 0.001 0.001 0.093 0.001 0.009 0.857 0.001 0.001 0.001 0.018 0.021 0.001 0.001 109 A 0.001 0.001 0.023 0.001 0.008 0.945 0.001 0.001 0.001 0.010 0.012 0.001 0.001 110 K 0.001 0.001 0.010 0.001 0.006 0.969 0.001 0.001 0.001 0.004 0.011 0.001 0.001 111 R 0.001 0.001 0.007 0.001 0.005 0.968 0.001 0.001 0.001 0.005 0.013 0.001 0.001 112 E 0.001 0.001 0.007 0.001 0.001 0.980 0.001 0.001 0.001 0.005 0.005 0.001 0.001 113 E 0.001 0.001 0.004 0.001 0.001 0.989 0.001 0.001 0.001 0.002 0.005 0.001 0.001 114 W 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 115 L 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 116 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 118 A 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 119 M 0.001 0.001 0.002 0.001 0.004 0.975 0.001 0.001 0.001 0.001 0.018 0.001 0.001 120 H 0.001 0.001 0.001 0.001 0.015 0.872 0.001 0.001 0.001 0.001 0.110 0.001 0.001 121 A 0.001 0.001 0.003 0.001 0.026 0.607 0.001 0.001 0.001 0.011 0.352 0.001 0.001 122 C 0.001 0.001 0.037 0.001 0.070 0.252 0.001 0.001 0.001 0.062 0.577 0.001 0.001 123 L 0.001 0.011 0.279 0.001 0.002 0.011 0.001 0.001 0.001 0.679 0.017 0.001 0.001 124 D 0.001 0.002 0.894 0.001 0.001 0.010 0.001 0.001 0.001 0.088 0.004 0.001 0.001 125 E 0.001 0.001 0.001 0.001 0.009 0.982 0.001 0.001 0.001 0.001 0.008 0.001 0.001 126 S 0.001 0.001 0.001 0.001 0.013 0.982 0.001 0.001 0.001 0.001 0.004 0.001 0.001 127 E 0.001 0.001 0.001 0.001 0.006 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 128 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 131 L 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 132 A 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.012 0.001 0.001 133 A 0.001 0.001 0.002 0.001 0.002 0.948 0.001 0.001 0.001 0.001 0.047 0.001 0.001 134 A 0.001 0.001 0.007 0.001 0.003 0.957 0.001 0.001 0.001 0.002 0.032 0.001 0.001 135 G 0.001 0.001 0.017 0.001 0.008 0.945 0.001 0.001 0.001 0.018 0.012 0.001 0.001 136 P 0.001 0.001 0.011 0.001 0.009 0.954 0.001 0.001 0.001 0.004 0.022 0.001 0.001 137 L 0.001 0.001 0.002 0.001 0.004 0.979 0.001 0.001 0.001 0.002 0.013 0.001 0.001 138 L 0.001 0.001 0.004 0.001 0.001 0.991 0.001 0.001 0.001 0.002 0.002 0.001 0.001 139 T 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 140 R 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 141 L 0.001 0.001 0.002 0.001 0.003 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 142 A 0.001 0.001 0.002 0.001 0.009 0.954 0.001 0.001 0.001 0.002 0.033 0.001 0.001 143 Q 0.001 0.001 0.006 0.001 0.017 0.817 0.001 0.001 0.001 0.007 0.153 0.001 0.001 144 F 0.001 0.001 0.084 0.001 0.037 0.609 0.001 0.001 0.001 0.039 0.229 0.001 0.001 145 E 0.001 0.007 0.431 0.001 0.025 0.148 0.001 0.001 0.001 0.176 0.210 0.001 0.001 146 E 0.001 0.004 0.781 0.001 0.006 0.015 0.001 0.001 0.001 0.146 0.047 0.001 0.001 147 P 0.001 0.003 0.921 0.001 0.002 0.004 0.001 0.001 0.001 0.062 0.008 0.001 0.001