# TARGET T0373 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0373.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2372 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.147 0.017 0.012 0.015 0.011 0.018 0.031 0.007 0.001 0.002 0.742 2 P 0.011 0.001 0.003 0.005 0.002 0.002 0.008 0.001 0.001 0.001 0.967 3 T 0.023 0.001 0.003 0.010 0.002 0.006 0.085 0.001 0.001 0.001 0.869 4 N 0.056 0.001 0.001 0.009 0.001 0.002 0.090 0.001 0.001 0.002 0.837 5 Q 0.071 0.005 0.001 0.010 0.001 0.002 0.214 0.001 0.001 0.005 0.692 6 D 0.054 0.011 0.001 0.009 0.001 0.003 0.490 0.001 0.001 0.008 0.422 7 L 0.087 0.077 0.001 0.017 0.002 0.003 0.319 0.001 0.001 0.014 0.480 8 Q 0.056 0.224 0.001 0.003 0.001 0.002 0.411 0.001 0.001 0.010 0.291 9 L 0.036 0.683 0.002 0.004 0.002 0.004 0.095 0.004 0.001 0.003 0.168 10 A 0.018 0.921 0.001 0.001 0.001 0.001 0.009 0.003 0.001 0.001 0.044 11 A 0.011 0.934 0.001 0.001 0.001 0.001 0.007 0.003 0.001 0.001 0.044 12 H 0.013 0.957 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.025 13 L 0.009 0.982 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.005 14 R 0.004 0.984 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.009 15 S 0.004 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 16 Q 0.005 0.982 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.007 17 V 0.007 0.984 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.004 18 T 0.002 0.988 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 19 T 0.004 0.983 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.010 20 L 0.009 0.982 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.005 21 T 0.006 0.979 0.004 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.006 22 R 0.005 0.978 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.010 23 R 0.019 0.957 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.019 24 L 0.012 0.965 0.005 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.012 25 R 0.009 0.956 0.002 0.001 0.001 0.001 0.001 0.013 0.001 0.001 0.017 26 R 0.019 0.938 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.037 27 E 0.023 0.927 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.043 28 A 0.061 0.880 0.003 0.001 0.001 0.001 0.002 0.015 0.001 0.001 0.036 29 Q 0.088 0.777 0.014 0.002 0.001 0.005 0.005 0.034 0.001 0.001 0.073 30 A 0.236 0.552 0.019 0.003 0.001 0.004 0.003 0.038 0.001 0.001 0.143 31 D 0.279 0.165 0.006 0.009 0.004 0.002 0.005 0.112 0.001 0.001 0.420 32 P 0.055 0.009 0.012 0.004 0.001 0.001 0.003 0.004 0.001 0.001 0.912 33 V 0.024 0.008 0.079 0.034 0.006 0.014 0.115 0.002 0.001 0.001 0.717 34 Q 0.096 0.008 0.002 0.043 0.005 0.011 0.370 0.001 0.001 0.002 0.462 35 F 0.028 0.013 0.001 0.016 0.001 0.002 0.027 0.001 0.001 0.001 0.911 36 S 0.017 0.058 0.001 0.016 0.003 0.005 0.218 0.001 0.001 0.003 0.679 37 Q 0.031 0.063 0.001 0.015 0.006 0.015 0.564 0.002 0.001 0.022 0.283 38 L 0.095 0.664 0.002 0.016 0.005 0.009 0.032 0.003 0.001 0.004 0.171 39 V 0.013 0.910 0.001 0.003 0.004 0.005 0.016 0.002 0.001 0.001 0.045 40 V 0.004 0.968 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.018 41 L 0.005 0.979 0.001 0.001 0.001 0.003 0.001 0.002 0.001 0.001 0.007 42 G 0.004 0.981 0.001 0.001 0.001 0.002 0.001 0.005 0.001 0.001 0.006 43 A 0.020 0.948 0.002 0.001 0.001 0.002 0.001 0.007 0.001 0.001 0.017 44 I 0.020 0.937 0.007 0.002 0.005 0.005 0.002 0.010 0.001 0.001 0.012 45 D 0.023 0.868 0.004 0.009 0.009 0.016 0.004 0.030 0.001 0.001 0.036 46 R 0.095 0.651 0.028 0.009 0.014 0.015 0.014 0.068 0.001 0.001 0.103 47 L 0.289 0.393 0.050 0.005 0.008 0.012 0.046 0.037 0.001 0.005 0.154 48 G 0.084 0.053 0.079 0.017 0.009 0.009 0.057 0.025 0.001 0.005 0.662 49 G 0.124 0.017 0.085 0.024 0.008 0.009 0.173 0.011 0.001 0.013 0.535 50 D 0.270 0.008 0.040 0.021 0.003 0.005 0.121 0.006 0.001 0.012 0.514 51 V 0.089 0.010 0.046 0.124 0.010 0.019 0.121 0.003 0.001 0.008 0.569 52 T 0.058 0.003 0.003 0.048 0.010 0.012 0.477 0.001 0.001 0.003 0.386 53 P 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.995 54 S 0.001 0.002 0.001 0.008 0.003 0.008 0.553 0.001 0.001 0.004 0.420 55 E 0.031 0.006 0.001 0.002 0.001 0.003 0.848 0.001 0.001 0.025 0.083 56 L 0.061 0.843 0.001 0.010 0.002 0.002 0.007 0.002 0.001 0.001 0.073 57 A 0.032 0.934 0.001 0.001 0.001 0.002 0.008 0.001 0.001 0.002 0.019 58 A 0.020 0.933 0.001 0.001 0.002 0.006 0.003 0.009 0.001 0.001 0.024 59 A 0.089 0.836 0.001 0.001 0.001 0.001 0.001 0.035 0.001 0.001 0.036 60 E 0.065 0.842 0.009 0.002 0.004 0.001 0.002 0.056 0.001 0.001 0.019 61 R 0.198 0.422 0.030 0.007 0.007 0.011 0.015 0.149 0.001 0.003 0.159 62 M 0.112 0.198 0.456 0.032 0.013 0.024 0.026 0.029 0.001 0.001 0.108 63 R 0.055 0.094 0.018 0.070 0.031 0.045 0.078 0.018 0.001 0.002 0.590 64 S 0.026 0.011 0.015 0.025 0.004 0.008 0.026 0.002 0.001 0.002 0.882 65 S 0.024 0.011 0.004 0.035 0.005 0.007 0.142 0.001 0.001 0.003 0.767 66 N 0.120 0.014 0.003 0.021 0.005 0.007 0.405 0.002 0.001 0.018 0.407 67 L 0.131 0.144 0.006 0.039 0.009 0.019 0.275 0.002 0.001 0.012 0.362 68 A 0.034 0.463 0.002 0.034 0.011 0.017 0.157 0.001 0.001 0.005 0.275 69 A 0.016 0.491 0.001 0.002 0.001 0.002 0.090 0.001 0.001 0.002 0.394 70 L 0.018 0.855 0.001 0.001 0.001 0.003 0.018 0.001 0.001 0.001 0.101 71 L 0.011 0.960 0.001 0.001 0.001 0.005 0.007 0.002 0.001 0.001 0.012 72 R 0.006 0.972 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.016 73 E 0.013 0.963 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.021 74 L 0.012 0.973 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.011 75 E 0.011 0.969 0.002 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.010 76 R 0.020 0.933 0.010 0.001 0.001 0.002 0.004 0.011 0.001 0.001 0.019 77 G 0.101 0.784 0.002 0.001 0.001 0.002 0.001 0.064 0.001 0.001 0.044 78 G 0.410 0.335 0.027 0.006 0.009 0.003 0.003 0.093 0.001 0.001 0.113 79 L 0.046 0.083 0.647 0.020 0.018 0.022 0.015 0.005 0.001 0.001 0.144 80 I 0.005 0.038 0.026 0.212 0.207 0.293 0.030 0.005 0.001 0.001 0.184 81 V 0.013 0.025 0.002 0.428 0.142 0.227 0.021 0.002 0.001 0.001 0.139 82 R 0.019 0.025 0.003 0.179 0.128 0.212 0.047 0.004 0.001 0.002 0.381 83 H 0.026 0.007 0.006 0.184 0.136 0.205 0.042 0.005 0.001 0.004 0.384 84 A 0.011 0.001 0.006 0.100 0.063 0.146 0.069 0.002 0.001 0.005 0.596 85 D 0.017 0.001 0.001 0.032 0.121 0.104 0.267 0.001 0.001 0.005 0.452 86 P 0.002 0.001 0.001 0.003 0.002 0.002 0.007 0.001 0.001 0.001 0.984 87 Q 0.003 0.001 0.001 0.003 0.007 0.010 0.663 0.001 0.001 0.006 0.307 88 D 0.622 0.001 0.001 0.002 0.002 0.003 0.142 0.001 0.001 0.091 0.136 89 G 0.558 0.039 0.003 0.013 0.009 0.009 0.152 0.001 0.001 0.041 0.175 90 R 0.163 0.013 0.010 0.036 0.072 0.048 0.420 0.001 0.001 0.034 0.204 91 R 0.044 0.005 0.015 0.080 0.064 0.153 0.083 0.001 0.001 0.008 0.547 92 T 0.002 0.001 0.001 0.106 0.361 0.492 0.017 0.001 0.001 0.001 0.019 93 R 0.003 0.001 0.001 0.111 0.353 0.384 0.025 0.001 0.001 0.001 0.122 94 V 0.001 0.001 0.001 0.234 0.255 0.424 0.012 0.001 0.001 0.001 0.072 95 S 0.001 0.001 0.001 0.328 0.203 0.396 0.024 0.001 0.001 0.001 0.047 96 L 0.005 0.001 0.001 0.308 0.122 0.240 0.054 0.001 0.001 0.004 0.265 97 S 0.006 0.001 0.001 0.332 0.146 0.172 0.178 0.001 0.001 0.005 0.159 98 S 0.001 0.001 0.001 0.013 0.003 0.004 0.043 0.001 0.001 0.001 0.935 99 E 0.002 0.001 0.001 0.008 0.004 0.009 0.690 0.001 0.001 0.009 0.279 100 G 0.320 0.006 0.001 0.005 0.003 0.005 0.398 0.001 0.001 0.129 0.133 101 R 0.292 0.369 0.006 0.005 0.001 0.003 0.135 0.001 0.001 0.012 0.176 102 R 0.019 0.395 0.002 0.002 0.003 0.004 0.074 0.001 0.001 0.001 0.500 103 N 0.063 0.579 0.001 0.002 0.005 0.007 0.033 0.004 0.001 0.001 0.305 104 L 0.055 0.864 0.002 0.001 0.002 0.006 0.010 0.003 0.001 0.001 0.056 105 Y 0.012 0.919 0.002 0.001 0.002 0.004 0.010 0.003 0.001 0.001 0.048 106 G 0.039 0.839 0.001 0.001 0.001 0.002 0.008 0.011 0.001 0.001 0.099 107 N 0.070 0.866 0.003 0.001 0.001 0.001 0.004 0.011 0.001 0.001 0.044 108 R 0.032 0.890 0.011 0.001 0.001 0.001 0.007 0.009 0.001 0.001 0.047 109 A 0.021 0.835 0.007 0.001 0.001 0.001 0.012 0.012 0.001 0.001 0.109 110 K 0.055 0.776 0.001 0.001 0.001 0.001 0.006 0.007 0.001 0.001 0.154 111 R 0.037 0.891 0.003 0.001 0.001 0.001 0.006 0.004 0.001 0.001 0.057 112 E 0.017 0.921 0.003 0.001 0.001 0.001 0.004 0.005 0.001 0.001 0.047 113 E 0.026 0.908 0.001 0.001 0.001 0.001 0.006 0.004 0.001 0.001 0.053 114 W 0.022 0.919 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.054 115 L 0.016 0.936 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.044 116 V 0.007 0.969 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.015 117 R 0.007 0.966 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.021 118 A 0.011 0.968 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.017 119 M 0.014 0.971 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.008 120 H 0.020 0.948 0.006 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.015 121 A 0.037 0.909 0.008 0.001 0.001 0.001 0.002 0.019 0.001 0.001 0.023 122 C 0.302 0.456 0.005 0.001 0.001 0.001 0.001 0.180 0.001 0.001 0.054 123 L 0.514 0.211 0.160 0.004 0.001 0.001 0.007 0.057 0.001 0.002 0.044 124 D 0.091 0.041 0.125 0.009 0.002 0.002 0.294 0.058 0.001 0.003 0.376 125 E 0.001 0.001 0.014 0.002 0.001 0.001 0.008 0.001 0.001 0.001 0.973 126 S 0.001 0.001 0.001 0.001 0.001 0.001 0.715 0.001 0.001 0.002 0.282 127 E 0.017 0.007 0.001 0.001 0.001 0.001 0.904 0.001 0.001 0.028 0.042 128 R 0.043 0.870 0.001 0.002 0.001 0.001 0.042 0.002 0.001 0.003 0.037 129 A 0.007 0.970 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.014 130 L 0.011 0.972 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.014 131 L 0.010 0.985 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.002 132 A 0.004 0.989 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.004 133 A 0.017 0.959 0.002 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.016 134 A 0.071 0.900 0.002 0.001 0.001 0.001 0.001 0.018 0.001 0.001 0.008 135 G 0.127 0.799 0.012 0.001 0.001 0.001 0.001 0.025 0.001 0.001 0.036 136 P 0.021 0.481 0.030 0.001 0.001 0.001 0.002 0.005 0.001 0.001 0.460 137 L 0.026 0.522 0.001 0.001 0.001 0.001 0.005 0.012 0.001 0.001 0.433 138 L 0.059 0.839 0.001 0.001 0.001 0.001 0.008 0.005 0.001 0.001 0.086 139 T 0.009 0.938 0.001 0.001 0.001 0.001 0.009 0.004 0.001 0.001 0.036 140 R 0.021 0.942 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.032 141 L 0.023 0.952 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.019 142 A 0.031 0.937 0.003 0.001 0.001 0.002 0.002 0.006 0.001 0.001 0.018 143 Q 0.062 0.813 0.007 0.002 0.002 0.003 0.002 0.047 0.001 0.001 0.062 144 F 0.255 0.560 0.011 0.003 0.002 0.002 0.002 0.052 0.001 0.001 0.113 145 E 0.210 0.252 0.037 0.014 0.006 0.006 0.011 0.079 0.001 0.001 0.385 146 E 0.098 0.050 0.053 0.017 0.008 0.016 0.056 0.012 0.001 0.002 0.688 147 P 0.005 0.003 0.004 0.004 0.001 0.002 0.007 0.001 0.001 0.001 0.974