# TARGET T0373 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0373.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 2372 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.001 0.001 0.001 0.996 2 P 0.006 0.011 0.004 0.021 0.005 0.019 0.934 3 T 0.008 0.011 0.022 0.098 0.171 0.112 0.579 4 N 0.007 0.004 0.035 0.155 0.126 0.141 0.532 5 Q 0.005 0.003 0.042 0.564 0.092 0.083 0.211 6 D 0.003 0.001 0.016 0.766 0.030 0.047 0.136 7 L 0.002 0.001 0.007 0.907 0.025 0.016 0.043 8 Q 0.002 0.002 0.004 0.948 0.007 0.009 0.028 9 L 0.001 0.001 0.003 0.976 0.003 0.007 0.010 10 A 0.001 0.001 0.001 0.991 0.001 0.003 0.004 11 A 0.001 0.001 0.001 0.994 0.001 0.003 0.001 12 H 0.001 0.001 0.001 0.994 0.001 0.004 0.001 13 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 14 R 0.001 0.001 0.001 0.998 0.001 0.001 0.001 15 S 0.001 0.001 0.001 0.997 0.001 0.003 0.001 16 Q 0.001 0.001 0.001 0.995 0.001 0.004 0.001 17 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 18 T 0.001 0.001 0.001 0.995 0.001 0.004 0.001 19 T 0.001 0.001 0.001 0.994 0.001 0.005 0.001 20 L 0.001 0.001 0.001 0.992 0.001 0.006 0.001 21 T 0.001 0.001 0.001 0.993 0.001 0.005 0.001 22 R 0.001 0.001 0.001 0.989 0.001 0.009 0.001 23 R 0.001 0.001 0.001 0.985 0.001 0.011 0.002 24 L 0.001 0.001 0.001 0.980 0.001 0.013 0.004 25 R 0.001 0.001 0.004 0.977 0.002 0.011 0.005 26 R 0.001 0.001 0.011 0.959 0.002 0.023 0.004 27 E 0.001 0.001 0.021 0.924 0.003 0.044 0.006 28 A 0.003 0.003 0.029 0.861 0.017 0.068 0.019 29 Q 0.004 0.004 0.054 0.646 0.027 0.212 0.052 30 A 0.005 0.002 0.067 0.390 0.120 0.346 0.070 31 D 0.007 0.002 0.024 0.083 0.362 0.370 0.150 32 P 0.013 0.009 0.020 0.020 0.210 0.333 0.396 33 V 0.035 0.043 0.003 0.007 0.104 0.012 0.796 34 Q 0.040 0.025 0.002 0.013 0.041 0.004 0.875 35 F 0.001 0.001 0.028 0.956 0.002 0.009 0.004 36 S 0.001 0.001 0.015 0.973 0.001 0.009 0.002 37 Q 0.001 0.001 0.005 0.990 0.001 0.002 0.002 38 L 0.001 0.001 0.001 0.997 0.001 0.001 0.001 39 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 40 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 41 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 42 G 0.001 0.001 0.001 0.997 0.001 0.002 0.001 43 A 0.001 0.001 0.001 0.995 0.001 0.004 0.001 44 I 0.001 0.001 0.002 0.992 0.001 0.005 0.001 45 D 0.001 0.001 0.007 0.946 0.001 0.041 0.002 46 R 0.001 0.001 0.012 0.782 0.007 0.195 0.003 47 L 0.001 0.001 0.009 0.275 0.055 0.623 0.037 48 G 0.002 0.002 0.011 0.012 0.125 0.647 0.202 49 G 0.015 0.006 0.010 0.004 0.299 0.063 0.603 50 D 0.066 0.048 0.008 0.002 0.098 0.046 0.732 51 V 0.071 0.059 0.001 0.002 0.140 0.004 0.723 52 T 0.029 0.027 0.001 0.005 0.024 0.001 0.914 53 P 0.001 0.001 0.009 0.986 0.001 0.003 0.001 54 S 0.001 0.001 0.006 0.991 0.001 0.002 0.001 55 E 0.001 0.001 0.003 0.995 0.001 0.001 0.001 56 L 0.001 0.001 0.002 0.995 0.001 0.002 0.001 57 A 0.001 0.001 0.003 0.984 0.002 0.010 0.001 58 A 0.001 0.001 0.003 0.956 0.002 0.037 0.003 59 A 0.001 0.002 0.014 0.828 0.013 0.110 0.031 60 E 0.002 0.002 0.015 0.468 0.027 0.443 0.043 61 R 0.002 0.003 0.028 0.208 0.081 0.516 0.162 62 M 0.008 0.008 0.015 0.033 0.377 0.031 0.528 63 R 0.012 0.006 0.024 0.035 0.244 0.048 0.630 64 S 0.010 0.007 0.107 0.383 0.190 0.152 0.151 65 S 0.010 0.008 0.076 0.543 0.124 0.090 0.150 66 N 0.020 0.019 0.057 0.611 0.077 0.064 0.153 67 L 0.003 0.001 0.019 0.942 0.006 0.010 0.019 68 A 0.001 0.001 0.013 0.972 0.002 0.004 0.008 69 A 0.001 0.001 0.012 0.978 0.001 0.005 0.003 70 L 0.001 0.001 0.009 0.980 0.001 0.008 0.003 71 L 0.001 0.001 0.001 0.995 0.001 0.002 0.001 72 R 0.001 0.001 0.001 0.997 0.001 0.002 0.001 73 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 74 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 75 E 0.001 0.001 0.001 0.987 0.001 0.010 0.001 76 R 0.001 0.001 0.003 0.839 0.002 0.155 0.001 77 G 0.001 0.001 0.003 0.073 0.006 0.913 0.005 78 G 0.002 0.001 0.005 0.005 0.066 0.843 0.078 79 L 0.114 0.006 0.015 0.004 0.166 0.048 0.647 80 I 0.813 0.013 0.005 0.002 0.033 0.009 0.126 81 V 0.939 0.005 0.001 0.001 0.005 0.002 0.047 82 R 0.967 0.004 0.001 0.001 0.003 0.001 0.024 83 H 0.872 0.003 0.001 0.001 0.017 0.001 0.107 84 A 0.460 0.024 0.001 0.001 0.131 0.009 0.375 85 D 0.059 0.010 0.001 0.001 0.073 0.002 0.855 86 P 0.006 0.002 0.049 0.016 0.109 0.781 0.038 87 Q 0.005 0.002 0.059 0.012 0.070 0.826 0.026 88 D 0.032 0.013 0.176 0.022 0.252 0.367 0.137 89 G 0.082 0.012 0.047 0.015 0.142 0.442 0.259 90 R 0.509 0.023 0.008 0.002 0.081 0.033 0.343 91 R 0.791 0.013 0.002 0.001 0.035 0.006 0.151 92 T 0.922 0.001 0.001 0.004 0.017 0.002 0.054 93 R 0.964 0.001 0.001 0.004 0.003 0.001 0.027 94 V 0.980 0.001 0.001 0.007 0.001 0.001 0.010 95 S 0.951 0.001 0.001 0.020 0.002 0.003 0.023 96 L 0.715 0.010 0.001 0.018 0.008 0.006 0.243 97 S 0.060 0.001 0.001 0.006 0.022 0.003 0.907 98 S 0.004 0.001 0.030 0.642 0.072 0.240 0.011 99 E 0.002 0.001 0.025 0.747 0.014 0.205 0.007 100 G 0.002 0.001 0.023 0.919 0.006 0.033 0.016 101 R 0.002 0.002 0.005 0.967 0.005 0.010 0.011 102 R 0.003 0.001 0.007 0.965 0.003 0.016 0.005 103 N 0.001 0.001 0.009 0.956 0.003 0.025 0.005 104 L 0.001 0.001 0.011 0.934 0.006 0.039 0.008 105 Y 0.002 0.001 0.020 0.805 0.014 0.143 0.016 106 G 0.003 0.001 0.032 0.722 0.014 0.197 0.030 107 N 0.003 0.002 0.024 0.748 0.035 0.081 0.107 108 R 0.002 0.001 0.025 0.845 0.023 0.039 0.065 109 A 0.003 0.001 0.027 0.883 0.024 0.033 0.029 110 K 0.003 0.001 0.023 0.921 0.008 0.029 0.015 111 R 0.004 0.002 0.016 0.906 0.010 0.035 0.026 112 E 0.002 0.001 0.007 0.922 0.010 0.037 0.022 113 E 0.002 0.001 0.003 0.934 0.017 0.028 0.016 114 W 0.002 0.001 0.001 0.955 0.006 0.016 0.017 115 L 0.002 0.001 0.001 0.973 0.003 0.009 0.012 116 V 0.001 0.001 0.003 0.981 0.002 0.004 0.009 117 R 0.002 0.001 0.008 0.971 0.004 0.007 0.008 118 A 0.001 0.001 0.020 0.955 0.003 0.016 0.005 119 M 0.001 0.002 0.024 0.919 0.004 0.046 0.005 120 H 0.001 0.001 0.124 0.748 0.008 0.110 0.008 121 A 0.001 0.001 0.095 0.519 0.010 0.367 0.009 122 C 0.001 0.001 0.081 0.268 0.032 0.551 0.066 123 L 0.001 0.005 0.001 0.008 0.447 0.004 0.534 124 D 0.001 0.004 0.001 0.003 0.021 0.001 0.970 125 E 0.001 0.001 0.005 0.976 0.003 0.014 0.001 126 S 0.001 0.001 0.007 0.982 0.001 0.009 0.001 127 E 0.001 0.001 0.008 0.988 0.001 0.002 0.001 128 R 0.001 0.001 0.002 0.995 0.001 0.002 0.001 129 A 0.001 0.001 0.001 0.987 0.001 0.010 0.001 130 L 0.001 0.001 0.003 0.963 0.001 0.032 0.001 131 L 0.001 0.001 0.006 0.943 0.004 0.039 0.007 132 A 0.001 0.001 0.019 0.918 0.003 0.056 0.003 133 A 0.001 0.001 0.044 0.751 0.005 0.191 0.008 134 A 0.001 0.001 0.038 0.782 0.008 0.156 0.015 135 G 0.001 0.001 0.024 0.852 0.052 0.033 0.037 136 P 0.001 0.001 0.044 0.874 0.010 0.053 0.019 137 L 0.001 0.001 0.020 0.937 0.002 0.035 0.005 138 L 0.001 0.001 0.004 0.984 0.002 0.006 0.003 139 T 0.001 0.001 0.003 0.988 0.001 0.006 0.002 140 R 0.001 0.001 0.003 0.980 0.001 0.015 0.001 141 L 0.001 0.001 0.008 0.959 0.001 0.026 0.006 142 A 0.001 0.001 0.013 0.933 0.003 0.043 0.005 143 Q 0.001 0.001 0.016 0.759 0.007 0.204 0.012 144 F 0.002 0.001 0.027 0.519 0.050 0.309 0.092 145 E 0.004 0.008 0.025 0.259 0.237 0.230 0.237 146 E 0.004 0.007 0.016 0.064 0.052 0.101 0.755 147 P 0.001 0.001 0.002 0.003 0.005 0.004 0.985