# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a61A 145 7.48e-15 2fbhA 146 3.48e-14 1z91A 147 3.83e-14 1jgsA 138 5.88e-14 a.4.5.28 66683 2fbiA 142 8.45e-14 1lnwA 147 3.54e-13 a.4.5.28 78104 1lj9A 144 4.49e-13 a.4.5.28 78035 1s3jA 155 1.02e-12 a.4.5.28 98437 2ethA 154 1.94e-12 2fxaA 207 9.85e-10 1p4xA 250 4.43e-08 a.4.5.28,a.4.5.28 87784,87785 1ub9A 100 4.92e-06 a.4.5.28 99159 1on2A 142 7.37e-06 a.4.5.24,a.76.1.1 87103,87104 1mkmA 249 2.83e-04 a.4.5.33,d.110.2.2 79242,79243 1xmaA 145 3.73e-04 1sfxA 109 3.83e-04 a.4.5.50 105505 1yyvA 131 7.41e-04 1z7uA 112 7.94e-04 1tbxA 99 9.99e-04 a.4.5.48 106748 1okrA 123 1.15e-03 a.4.5.39 93269 2co5A 99 1.18e-03 2dtr 226 1.53e-03 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1sd4A 126 4.17e-03 a.4.5.39 105428 2fswA 107 5.52e-03 1dpuA 99 5.65e-03 1dpuA a.4.5.16 16150 2cfxA 144 6.02e-03 1ulyA 192 7.18e-03 1z1dA 103 7.72e-03 2f2eA 146 9.23e-03 1r1tA 122 9.96e-03 a.4.5.5 104769 1bjaA 95 1.03e-02 1bjaA a.4.5.9 16122 1xnpA 202 1.08e-02 2b0lA 102 1.33e-02 1smtA 122 1.37e-02 1smtA a.4.5.5 16109 1q1hA 110 3.05e-02 a.4.5.41 95580 2g7uA 257 3.61e-02 1hw5A 210 4.11e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 1u2wA 122 4.27e-02 1r1uA 106 4.60e-02 a.4.5.5 104771 1i6xA 209 5.75e-02 a.4.5.4,b.82.3.2 83673,83674 2eshA 118 7.29e-02 1r7jA 95 8.96e-02 a.4.5.49 104836 1b9mA 265 1.00e-01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1xn7A 78 1.02e-01 2fu4A 83 1.08e-01 6paxA 133 1.12e-01 6paxA a.4.1.5,a.4.1.5 64758,64759 1yg2A 179 1.59e-01 1mzbA 136 1.80e-01 a.4.5.42 91497 1ixcA 294 2.22e-01 a.4.5.37,c.94.1.1 83764,83765 1qzzA 374 3.03e-01 a.4.5.29,c.66.1.12 96719,96720 1k78A 149 3.06e-01 a.4.1.5,a.4.1.5 68255,68256 1j75A 67 3.33e-01 a.4.5.19 62673 1jhfA 202 3.36e-01 a.4.5.2,b.87.1.1 63057,63058 2dbbA 151 3.43e-01 1sfuA 75 3.59e-01 a.4.5.19 105503 1qbjA 81 3.94e-01 1qbjA a.4.5.19 16155 1zybA 232 6.54e-01 1hw1A 239 6.73e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2bgcA 238 7.53e-01 1zljA 78 9.55e-01 1je8A 82 1.03e+00 a.4.6.2 77108 1wi9A 72 1.09e+00 1fp2A 352 1.13e+00 1fpxA a.4.5.29,c.66.1.12 59941,59942 1omiA 248 1.21e+00 b.82.3.3,a.4.5.4 87079,87080 1j5yA 187 1.37e+00 a.4.5.1,d.94.2.1 71592,71593 1ldjA 760 1.43e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1in6A 334 1.45e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 2bx9A 53 1.58e+00 2bjcA 62 1.61e+00 1y0uA 96 1.62e+00 2cu6A 103 2.09e+00 1ev7A 317 2.10e+00 1ev7B c.52.1.9 33315 1cjgA 62 2.11e+00 1pru a.35.1.5 17112 1in4A 334 2.19e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1puoA 170 2.22e+00 a.101.1.1,a.101.1.1 95134,95135 2acjA 66 2.26e+00 1yqyA 523 2.57e+00 1xd7A 145 2.78e+00 a.4.5.55 109566 2esnA 310 2.83e+00 1c8bA 371 2.99e+00 1c8bA c.56.1.2 59082 2bgsA 344 3.38e+00 1s7oA 113 3.75e+00 a.4.13.3 105354 1mai 131 3.75e+00 1mai b.55.1.1 26951 1opc 110 4.33e+00 1opc a.4.6.1 16231 2cg4A 152 4.36e+00 1aisB 200 4.77e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 2cohA 202 5.08e+00 1whzA 70 5.45e+00 1ri7A 171 5.48e+00 a.4.5.32,d.58.4.2 97504,97505 1a04A 215 5.67e+00 1a04A a.4.6.2,c.23.1.1 16234,31089 1t6sA 162 5.78e+00 1kn6A 90 6.00e+00 d.58.3.3 72770 1xb4A 202 6.12e+00 1sgoA 139 6.47e+00 d.82.3.1 98857 1lvaA 258 6.53e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ufmA 84 7.07e+00 a.4.5.47 107816 1xmkA 79 7.48e+00 1b0nA 111 7.88e+00 1b0nA a.34.1.1,a.35.1.3 17001,17064 1u5tC 202 8.30e+00 a.4.5.54,a.4.5.54 107688,107689 1puzA 82 8.87e+00 a.218.1.1 104320 1j7nA 776 9.76e+00 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1b24A 188 9.81e+00 1b24A d.95.2.1,d.95.2.1 40573,40574 1khyA 148 1.02e+01 a.174.1.1 77410 1q06A 135 1.05e+01 a.6.1.3 95493 1iae 200 1.05e+01 1iae d.92.1.8 40311 1z67A 135 1.06e+01 1uhnA 189 1.06e+01 a.39.1.5 99399 1qtrA 317 1.07e+01 1qtrA c.69.1.7 34660 1b00A 127 1.08e+01 3chy c.23.1.1 31122 1d2fA 390 1.12e+01 1d2fA c.67.1.3 34411 1ys7A 233 1.18e+01 1iab 200 1.21e+01 1iae d.92.1.8 40312 1hlvA 131 1.31e+01 a.4.1.7,a.4.1.7 65854,65855 1urvA 190 1.34e+01 1ut0A 190 1.34e+01 a.1.1.2 108012 1wm1A 317 1.37e+01 c.69.1.7 109405 1oyiA 82 1.38e+01 a.4.5.19 93729 1stzA 338 1.39e+01 a.4.5.51,d.110.2.3 106009,106010 1r71A 178 1.39e+01 a.4.14.1 104823 1aszB 490 1.42e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1x0rA 249 1.42e+01 1wj5A 120 1.49e+01 2tct 207 1.53e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1e19A 314 1.54e+01 1b7bA c.73.1.1 34967 1fy7A 278 1.54e+01 1fy7A d.108.1.1 40817 1u5tA 233 1.54e+01 a.4.5.54,a.4.5.54 107684,107685 1ka2A 499 1.58e+01 d.92.1.5 77305 1utxA 66 1.62e+01 a.35.1.3 108034 1wzdA 215 1.63e+01 1ihkA 174 1.67e+01 1bfg b.42.1.1 62384 1v6tA 255 1.67e+01 1u5tB 169 1.70e+01 a.4.5.54,a.4.5.54 107686,107687 1mspA 126 1.72e+01 1mspA b.1.11.2 22333 1fo1A 271 1.74e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 1t95A 240 1.74e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1p9qC 256 1.75e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1zkrA 153 1.75e+01 1bia 321 1.75e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2mspA 126 1.83e+01 1mspA b.1.11.2 22335 1i50F 155 1.91e+01 a.143.1.2 61760 1zxtA 76 1.91e+01 1qo0D 196 1.92e+01 1qo0D c.23.1.3 31125 1iw0A 215 1.95e+01 a.132.1.1 83720 1w9iA 770 2.02e+01 1twfF 155 2.02e+01 1p4wA 99 2.04e+01 a.4.6.2 87783 1zvnA 99 2.12e+01 1a6i 217 2.15e+01 2tct a.4.1.9,a.121.1.1 16066,19243 2cujA 108 2.24e+01 2b5aA 77 2.27e+01 1uyrA 737 2.36e+01 c.14.1.4,c.14.1.4 100188,100189 1w2xA 758 2.42e+01 c.14.1.4,c.14.1.4 109134,109135 1wdvA 152 2.47e+01 1bg4 302 2.60e+01 1taxA c.1.8.3 28806 1t98A 287 2.60e+01 1eo1A 124 2.66e+01 1eo1A c.55.5.1 33739 1qxhA 167 2.74e+01 c.47.1.10 96528 1hx1B 114 2.75e+01 1hx1B a.7.7.1 61350 1danT 80 2.97e+01 1boy b.1.2.1 21953 1zxkA 98 3.00e+01 1gk9A 260 3.02e+01 d.153.1.2 65246 1z7dA 433 3.03e+01 1gtfA 74 3.04e+01 b.82.5.1 70460 1pru 56 3.09e+01 1pru a.35.1.5 17104 1zk8A 183 3.10e+01 1cdq 77 3.10e+01 1cds g.7.1.3 44459 1tuoA 464 3.10e+01 1k9uA 78 3.22e+01 a.39.1.10 84348 1f3aA 222 3.39e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1mgtA 174 3.50e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1mkp 144 3.51e+01 1vhrA c.45.1.1 32654 1rm6A 769 3.51e+01 1r3dA 264 3.58e+01 1yioA 208 3.60e+01 1vjoA 393 3.73e+01 c.67.1.3 100827 1ku1A 230 3.76e+01 a.118.3.1 72996 1wab 232 3.79e+01 1wab c.23.10.3 31341 1qusA 322 3.87e+01 1ltm d.2.1.6 36991 2dc3A 193 3.87e+01 1te0A 318 3.89e+01 1a58 177 3.95e+01 2cpl b.62.1.1 27495 2g7gA 213 4.02e+01 1nlfA 279 4.04e+01 c.37.1.11 85850 1es9A 232 4.10e+01 1wab c.23.10.3 31340 1ohlA 342 4.12e+01 c.1.10.3 87035 1rzrA 332 4.16e+01 1vjlA 164 4.19e+01 d.257.1.1 100822 1g8yA 279 4.23e+01 1g8yA c.37.1.11 32302 1w9cA 321 4.27e+01 1v88A 130 4.28e+01 b.55.1.1 108423 1wmqA 147 4.38e+01 1y9uA 323 4.44e+01 1sotA 320 4.48e+01 b.36.1.4,b.47.1.1 105852,105853 1m7kA 99 4.54e+01 a.7.7.1 74573 2ghjA 118 4.59e+01 1avoB 140 4.63e+01 1avoB 1zs9A 261 4.65e+01 1gtvA 214 4.69e+01 c.37.1.1 70537 1ci3M 249 4.71e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 1e3aA 260 4.78e+01 1ajqA d.153.1.2 41838 1np6A 174 4.80e+01 c.37.1.10 85954 1mr3F 181 4.83e+01 c.37.1.8 79422 1k3yA 221 4.87e+01 a.45.1.1,c.47.1.5 77245,77246 2givA 295 4.88e+01 1jftA 340 4.95e+01 a.35.1.5,c.93.1.1 66652,66653 2b9hA 353 5.02e+01 1mj5A 302 5.11e+01 c.69.1.8 91285 1vf1A 229 5.11e+01 1lylA 504 5.11e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1h10A 125 5.14e+01 b.55.1.1 83446 1z2aA 168 5.16e+01 1mc0A 368 5.20e+01 d.110.2.1,d.110.2.1 78937,78938 2ftzA 284 5.21e+01 1di6A 195 5.28e+01 1di6A c.57.1.1 33863 1unqA 125 5.30e+01 b.55.1.1 107968 1xsvA 113 5.36e+01 1zx4A 192 5.39e+01 1tfzA 424 5.46e+01 d.32.1.3,d.32.1.3 106886,106887 2g0dA 409 5.50e+01 1k2eA 156 5.51e+01 d.113.1.1 72010 1ufaA 520 5.53e+01 a.8.3.3,c.6.2.4 99329,99330 1nnwA 252 5.56e+01 d.159.1.5 80674 1v38A 78 5.82e+01 a.60.1.2 100280 1tvlA 454 5.87e+01 c.1.16.4 107366 1wpbA 172 6.01e+01 1tvfA 369 6.09e+01 b.105.1.2,e.3.1.1 107358,107359 1vimA 200 6.13e+01 c.80.1.3 100758 2culA 232 6.14e+01 1kq3A 376 6.17e+01 e.22.1.2 68790 2bo3A 94 6.20e+01 3tmkA 216 6.23e+01 3tmkA c.37.1.1 31920 2b1xA 470 6.40e+01 1lngA 87 6.43e+01 d.201.1.1 74045 1w2lA 99 6.46e+01 1eswA 500 6.48e+01 1cwyA c.1.8.1 59500 1cdzA 96 6.49e+01 1cdzA c.15.1.1 30925 1ble 163 6.50e+01 1ble c.38.1.1 32475 1azwA 313 6.53e+01 1qtrA c.69.1.7 34658 1zsxA 347 6.54e+01 1s21A 206 6.58e+01 d.166.1.4 105222 1exbA 332 6.70e+01 1qrqA c.1.7.1 28666 1vj2A 126 6.78e+01 b.82.1.10 100796 1fehA 574 6.82e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1cv2A 296 6.85e+01 1bn6A c.69.1.8 34680 1w1wE 121 6.95e+01 1h7nA 342 6.96e+01 1b4kA c.1.10.3 60726 1ecrA 309 7.01e+01 1ecrA e.2.1.1 42678 1kqfB 294 7.04e+01 d.58.1.5,f.23.22.1 75900,75901 1cm9A 74 7.12e+01 1b3aA d.9.1.1 37405 1lw7A 365 7.13e+01 c.26.1.3,c.37.1.1 74295,74296 1gl2D 65 7.15e+01 h.1.15.1 65281 1vrpA 381 7.20e+01 1e1oA 504 7.23e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1nhkL 144 7.23e+01 1npk d.58.6.1 39142 1rr7A 129 7.25e+01 a.4.1.14 105075 1z02A 446 7.25e+01 1qipA 183 7.32e+01 1qipA d.32.1.1 38470 1oaoC 729 7.39e+01 e.26.1.3 86746 1n6zA 105 7.44e+01 d.263.1.1 85369 1g1xC 88 7.60e+01 1fjfR a.4.8.1 16249 1eudA 311 7.63e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 2a6cA 83 7.69e+01 1kyqA 274 7.84e+01 c.2.1.11,e.37.1.1 73281,73282 1xdnA 277 7.85e+01 1rlr 761 7.87e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1g6uA 48 7.88e+01 1g6uA k.9.1.1 46425 1vmaA 306 7.96e+01 a.24.13.1,c.37.1.10 108887,108888 1mjhA 162 7.98e+01 1mjhA c.26.2.4 31639 8rucI 123 8.11e+01 1rboC d.73.1.1 39629 1y7yA 74 8.17e+01 1u2zA 433 8.21e+01 c.66.1.31 107626 2bwnA 401 8.28e+01 1o6sB 105 8.30e+01 b.1.6.1 81096 1e68A 70 8.33e+01 1e68A a.64.2.1 18144 1m2tA 254 8.35e+01 d.165.1.1 84761 1gegA 256 8.38e+01 1ybvA c.2.1.2 29888 1tuzA 118 8.46e+01 1zh5A 195 8.66e+01 1b79A 119 8.67e+01 1b79A a.81.1.1 18451 1whrA 124 8.74e+01 1vie 62 8.80e+01 1vie b.34.4.1 24592 1c02A 166 8.81e+01 1qspA a.24.10.2 16633 1x6iA 91 8.89e+01