# List of top-scoring protein chains for T0372.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vpqA 273 3.62e+00 1twyA 290 4.08e+00 1seqL 213 6.02e+00 1f0xA 571 7.72e+00 1f0xA d.58.32.2,d.145.1.1 39483,41746 2a0lD 116 7.94e+00 1a3wA 500 9.32e+00 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1mk4A 157 9.74e+00 d.108.1.1 84979 1ryaA 160 1.27e+01 d.113.1.5 105122 1yyfC 181 1.39e+01 1io0A 185 1.42e+01 c.10.1.1 76753 1orsB 221 2.08e+01 b.1.1.1,b.1.1.2 87351,87352 2b3jA 159 2.35e+01 2g75B 213 2.41e+01 2ar9A 278 2.55e+01 1kmmA 424 2.59e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 1httA 423 2.59e+01 1adjA c.51.1.1,d.104.1.1 33178,40727 1rhjB 110 2.62e+01 1suoA 476 2.67e+01 a.104.1.1 106026 2f5tX 233 2.84e+01 1phwA 284 2.85e+01 c.1.10.4 104155 1zt2B 212 2.91e+01 1g7uA 284 2.94e+01 1d9eA c.1.10.4 60334 1ybyA 215 3.05e+01 1jxqA 284 3.14e+01 c.17.1.1 67426 1nw9B 277 3.24e+01 c.17.1.1 86294 1n55A 251 3.28e+01 c.1.1.1 80007 1gfwB 97 3.39e+01 1pauB 1amk 251 3.40e+01 1amk c.1.1.1 28503 1nmeB 92 3.53e+01 1po5A 476 3.86e+01 a.104.1.1 94963 1x5xA 109 3.89e+01 2au1A 292 4.00e+01 1rhkB 102 4.07e+01 1ltzA 297 4.57e+01 d.178.1.1 74254 1y0zA 330 4.58e+01 1l8wA 348 4.62e+01 a.154.1.1 73704 1txuA 273 4.89e+01 a.222.1.1 107439 1wyrA 121 4.93e+01 1b04A 318 5.03e+01 1b04A d.142.2.2 41579 1qqdB 99 5.28e+01 1agdB b.1.1.2 20770 1k4mA 213 5.29e+01 c.26.1.3 77258 1x7aC 235 5.30e+01 1kb5L 214 5.91e+01 8fabA b.1.1.1,b.1.1.2 20228,21240 2copA 109 5.94e+01 1bqg 451 6.01e+01 1bqg c.1.11.2,d.54.1.1 29217,38861 1rscI 111 6.05e+01 2brrL 215 6.11e+01 2g7jA 124 6.17e+01 1ci0A 228 6.30e+01 1ci0A b.45.1.1 25750 1nldL 219 6.35e+01 8fabA b.1.1.1,b.1.1.2 20110,21140 1i07A 60 6.40e+01 1aojA b.34.2.1 61477 1a80 277 6.49e+01 1frb c.1.7.1 28700 1hw6A 278 6.52e+01 1frb c.1.7.1 61296 1orqB 219 6.53e+01 b.1.1.1,b.1.1.2 87346,87347 1fskB 214 6.53e+01 32c2A b.1.1.1,b.1.1.2 20466,21430 1i9cA 137 6.55e+01 c.23.6.1 71136 1ncwL 219 6.80e+01 b.1.1.1,b.1.1.2 85557,85558 1m9hA 278 6.81e+01 c.1.7.1 91236 1uywL 212 6.84e+01 1v7rA 186 6.84e+01 c.51.4.1 100482 2f53B 100 6.91e+01 1rumL 219 6.98e+01 b.1.1.1,b.1.1.2 97869,97870 1tgoA 773 7.07e+01 1tgoA c.55.3.5,e.8.1.1 33721,43010 1ao7B 100 7.14e+01 1agdB b.1.1.2 20697 2fug9 182 7.21e+01 1b1a 137 7.21e+01 1be1 c.23.6.1 31242 1jnlL 211 7.26e+01 b.1.1.1,b.1.1.2 66958,66959 1q2fA 32 7.40e+01 j.69.1.1 95627 1x7qB 99 7.50e+01 1r74A 294 7.54e+01 c.66.1.5 104828 1k5nB 100 7.56e+01 b.1.1.2 77268 1tqbC 219 7.61e+01 b.1.1.1,b.1.1.2 107215,107216 1igyA 213 7.62e+01 8fabA b.1.1.1,b.1.1.2 19768,20874 1ypzB 102 7.65e+01 3fruB 99 7.68e+01 1agdB b.1.1.2 20658 1kjvB 100 7.75e+01 b.1.1.2 77423 2f8oA 100 7.80e+01 1ccwA 137 7.83e+01 1be1 c.23.6.1 31238 1kkhA 317 8.03e+01 d.14.1.5,d.58.26.3 72645,72646 2ac5A 316 8.04e+01 1hlaM 97 8.06e+01 1agdB b.1.1.2 20669 1visA 324 8.08e+01 d.14.1.5,d.58.26.3 100769,100770 1gkuB 1054 8.19e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 1gl9B 1054 8.26e+01 c.37.1.16,c.37.1.16,e.10.1.1 65291,65292,65293 1ce6B 108 8.31e+01 1agdB b.1.1.2 20820 1jn6A 210 8.38e+01 b.1.1.1,b.1.1.2 66923,66924 1jnhA 212 8.40e+01 b.1.1.1,b.1.1.2 66939,66940 8tlnE 316 8.47e+01 1hyt d.92.1.2 59075 1z94A 147 8.49e+01 1kjoA 316 8.61e+01 d.92.1.2 77419 1p6tA 151 8.66e+01 d.58.17.1,d.58.17.1 94188,94189 1zatA 250 8.67e+01 1y13A 181 8.99e+01