# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mk4A 157 6.25e-04 d.108.1.1 84979 1ne9A 335 7.10e-03 d.108.1.4,d.108.1.4 91839,91840 1cjwA 166 1.91e-01 1cjwA d.108.1.1 40818 1wwzA 159 2.23e-01 1tiqA 180 2.55e-01 d.108.1.1 107010 1z4eA 153 2.64e-01 1vhsA 175 5.05e-01 d.108.1.1 100698 2ge3A 170 7.79e-01 1s3zA 165 9.71e-01 d.108.1.1 105250 1o98A 511 1.31e+00 c.105.1.1,c.76.1.3 86684,86685 1a53 247 1.36e+00 1a53 c.1.2.4 28564 1twyA 290 1.57e+00 1p0hA 318 1.59e+00 d.108.1.1 93866 2b99A 156 1.72e+00 1z9hA 290 2.02e+00 1n71A 180 2.13e+00 d.108.1.1 85370 1sqhA 312 2.25e+00 d.108.1.5 98966 1iicA 422 2.50e+00 1nmtA d.108.1.2,d.108.1.2 62422,62423 1hc7A 477 2.53e+00 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1wzlA 585 3.22e+00 1zu0A 529 3.31e+00 1hs6A 611 3.59e+00 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2glfA 450 3.79e+00 1e3oC 160 3.90e+00 1au7A a.4.1.1,a.35.1.1 59197,59198 1jmvA 141 4.07e+00 c.26.2.4 66897 1yx0A 159 4.29e+00 2d4pA 141 4.39e+00 1jljA 189 4.64e+00 c.57.1.1 63169 1rlzA 369 4.72e+00 c.31.1.1 104989 1xbbA 291 4.79e+00 2c71A 216 4.93e+00 1izcA 339 5.01e+00 c.1.12.5 83838 1t0tV 248 5.02e+00 d.58.4.10 106229 1o4wA 147 5.17e+00 c.120.1.1 86629 1gt1A 159 6.06e+00 b.60.1.1 90515 1r5eA 115 6.22e+00 1lw7A 365 6.28e+00 c.26.1.3,c.37.1.1 74295,74296 2cy2A 174 6.45e+00 1lrzA 426 6.62e+00 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1xdpA 687 6.95e+00 1fs1B 141 7.58e+00 1vcbB a.157.1.1,d.42.1.1 19252,38664 1u9lA 70 7.99e+00 a.60.4.2 107751 2fe7A 166 8.07e+00 1cqqA 180 8.18e+00 1cqqA b.47.1.4 26422 1gy6A 127 8.76e+00 d.17.4.2 70736 1qf8A 182 8.77e+00 1qf8A g.41.4.1 45212 1oi7A 288 8.93e+00 c.2.1.8,c.23.4.1 87049,87050 1gpmA 525 8.95e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1eziA 228 9.11e+00 1eyrA c.68.1.13 34512 2gb7A 305 9.14e+00 1mf7A 194 9.40e+00 c.62.1.1 84937 1zo2A 129 9.50e+00 1h09A 338 9.72e+00 b.109.1.1,c.1.8.8 83420,83421 1rz3A 201 9.94e+00 c.37.1.6 98132 1xhkA 187 1.04e+01 2cvjA 180 1.05e+01 1z4rA 168 1.07e+01 1sqwA 188 1.08e+01 1puiA 210 1.09e+01 c.37.1.8 88292 1ro5A 201 1.11e+01 d.108.1.3 105023 2gwgA 350 1.12e+01 1dc1A 323 1.15e+01 1dc1A c.52.1.11 33321 1llfA 534 1.17e+01 c.69.1.17 78094 1w9gA 104 1.20e+01 1g8mA 593 1.23e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1u34A 119 1.23e+01 g.76.1.1 107634 1x59A 73 1.24e+01 1gk9A 260 1.29e+01 d.153.1.2 65246 2aj6A 159 1.31e+01 1u8vA 490 1.32e+01 2c27A 315 1.33e+01 1p7gA 222 1.36e+01 a.2.11.1,d.44.1.1 94223,94224 1hp1A 516 1.38e+01 d.114.1.1,d.159.1.2 70976,70977 1v77A 212 1.41e+01 c.6.3.2 108402 1l8aA 886 1.45e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2af4C 333 1.51e+01 1gox 370 1.51e+01 1gox c.1.4.1 28607 1bjt 793 1.56e+01 1bjt e.11.1.1 43249 2fliA 220 1.56e+01 1kg0C 136 1.58e+01 d.169.1.1 72445 2a6tA 271 1.71e+01 1qo7A 394 1.81e+01 1qo7A c.69.1.11 34697 1vfrA 218 1.97e+01 1vfrA d.90.1.1 40247 2fbyA 205 2.08e+01 1cfr 285 2.09e+01 1cfr c.52.1.7 33312 1vicA 262 2.12e+01 c.68.1.13 100756 1ukfA 188 2.18e+01 d.3.1.10 99488 1uf3A 228 2.20e+01 d.159.1.6 99317 2bkkA 264 2.26e+01 2hrvA 142 2.30e+01 2hrvA b.47.1.4 26429 1pgvA 197 2.31e+01 c.10.1.1 88073 1f6vA 91 2.33e+01 1f6vA a.49.1.1 17791 1eiwA 111 2.38e+01 1eiwA c.23.3.1 31130 1xo0A 324 2.39e+01 1qstA 160 2.39e+01 1yghA d.108.1.1 40804 1u67A 600 2.42e+01 a.93.1.2,g.3.11.1 107697,107698 2fomB 185 2.44e+01 3chbD 104 2.47e+01 3chbD b.40.2.1 24970 1uhvA 500 2.48e+01 b.71.1.2,c.1.8.3 99402,99403 1q4gA 553 2.63e+01 a.93.1.2,g.3.11.1 95789,95790 1z7aA 308 2.74e+01 2fi9A 128 2.89e+01 1k7jA 206 2.92e+01 d.115.1.1 72103 1x31D 99 2.93e+01 1nf2A 268 2.93e+01 c.108.1.10 91849 2crbA 97 2.96e+01 1nu7D 282 3.02e+01 a.8.6.1,a.8.6.1 92191,92192 2au3A 407 3.10e+01 1sgjA 284 3.26e+01 c.1.12.5 105535 1egpA 45 3.27e+01 1egpA d.40.1.1 38561 1o8xA 146 3.29e+01 c.47.1.10 86681 1yrrA 382 3.38e+01 2csbA 519 3.38e+01 1zl0A 311 3.40e+01 1h7sA 365 3.44e+01 d.14.1.3,d.122.1.2 65705,65706 2tpsA 227 3.51e+01 2tpsA c.1.3.1 28591 1h2wA 710 3.52e+01 b.69.7.1,c.69.1.4 76596,76597 1f9vA 347 3.66e+01 1bg2 c.37.1.9 59745 1hlvA 131 3.67e+01 a.4.1.7,a.4.1.7 65854,65855 1wr2A 238 3.79e+01 2bhuA 602 3.83e+01 1yvoA 172 3.85e+01 2ajrA 331 4.01e+01 2b5aA 77 4.04e+01 1mba 147 4.04e+01 2fal a.1.1.2 15149 1v8aA 265 4.05e+01 c.72.1.2 100494 2g8oA 264 4.07e+01 1wjgA 137 4.11e+01 2b5eA 504 4.15e+01 1eexG 173 4.17e+01 1dioG a.23.2.1 16490 2cxaA 256 4.25e+01 2gk4A 232 4.34e+01 2fo1D 85 4.38e+01 1it2A 146 4.40e+01 a.1.1.2 66365 1pjhA 280 4.41e+01 c.14.1.3 94761 1xmxA 385 4.43e+01 1gy7A 125 4.52e+01 d.17.4.2 70738 1tv8A 340 4.52e+01 c.1.28.3 107352 1pq1A 196 4.52e+01 f.1.4.1 94986 1jb7B 260 4.60e+01 1otcB b.40.4.3 62839 1lcyA 325 4.61e+01 b.36.1.4,b.47.1.1 73834,73835 1ysjA 404 4.61e+01 2fcr 173 4.63e+01 1rcf c.23.5.1 31151 1dlyA 164 4.63e+01 1dlyA a.1.1.1 14983 1ia9A 280 4.64e+01 1ia9A d.144.1.5 62113 1ep0A 185 4.72e+01 1dzrA b.82.1.1 28080 1q6hA 224 4.73e+01 d.26.1.1 95975 1kgdA 180 4.79e+01 c.37.1.1 68582 1rd5A 262 4.86e+01 1p5zB 263 4.86e+01 c.37.1.1 87815 1xgkA 352 4.91e+01 1p5dX 463 4.93e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ovxA 67 4.96e+01 g.39.1.11 93622 1vsrA 136 4.97e+01 1vsrA c.52.1.15 33332 1jykA 254 5.02e+01 c.68.1.13 67458 1p1xA 260 5.02e+01 c.1.10.1 104060 2g8mA 264 5.07e+01 1hf8A 289 5.14e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1z85A 234 5.18e+01 1djrD 103 5.25e+01 3chbD b.40.2.1 24865 1dpo 223 5.29e+01 5ptp b.47.1.2 25975 1ois 223 5.32e+01 1a36A e.15.1.1 43267 1y43B 173 5.45e+01 1wo8A 126 5.50e+01 1po5A 476 5.50e+01 a.104.1.1 94963 1fo8A 343 5.51e+01 1foaA c.68.1.10 59927 2sga 181 5.57e+01 1qq4A b.47.1.1 25808 1euvA 221 5.57e+01 1euvA d.3.1.7 37133 1k8kA 418 5.58e+01 c.55.1.1,c.55.1.1 68305,68306 1ceo 343 5.61e+01 1ceo c.1.8.3 28808 1v0dA 329 5.69e+01 d.4.1.7 108204 1yrkA 126 5.72e+01 1vyoA 128 5.75e+01 1u46A 291 5.75e+01 d.144.1.7 107656 1ydwA 362 5.76e+01 2aboA 136 5.78e+01 2bolA 314 5.79e+01 1sz9A 144 5.84e+01 a.118.9.4 106139 2g7iA 125 5.84e+01 1zvdA 380 5.88e+01 1u5pA 216 5.94e+01 1usyA 275 6.07e+01 1atzA 189 6.09e+01 1atzA c.62.1.1 34132 2f9zC 159 6.21e+01 2fswA 107 6.27e+01 1e5kA 201 6.28e+01 1fr9A c.68.1.8 34578 1kyqA 274 6.32e+01 c.2.1.11,e.37.1.1 73281,73282 2gcuA 245 6.43e+01 1aop 497 6.45e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1fm0E 150 6.47e+01 1fmaE d.41.5.1 38629 1hj8A 222 6.54e+01 b.47.1.2 65844 1x3kA 152 6.54e+01 1utyA 187 6.57e+01 b.147.1.1 108036 1zbpA 273 6.57e+01 1h4xA 117 6.61e+01 1auz c.13.2.1 60626 1h1dA 221 6.63e+01 c.66.1.1 83452 2givA 295 6.64e+01 1fjgT 106 6.67e+01 1fjfT a.7.6.1 16338 1vr6A 350 6.77e+01 2ceyA 306 6.80e+01 1lj5A 379 6.81e+01 e.1.1.1 73928 2cvbA 188 6.95e+01 1vpqA 273 6.97e+01 1wcv1 257 7.04e+01 1uedA 406 7.06e+01 a.104.1.1 99256 1jggA 60 7.19e+01 2hddA a.4.1.1 62950 1zupA 315 7.22e+01 1uteA 313 7.24e+01 1uteA d.159.1.1 42078 1x6oA 174 7.26e+01 b.34.5.2,b.40.4.5 109493,109494 1u96A 69 7.31e+01 2avxA 171 7.31e+01 1g1xC 88 7.34e+01 1fjfR a.4.8.1 16249 2a7kA 250 7.36e+01 1o20A 427 7.37e+01 c.82.1.1 86556 1z47A 355 7.41e+01 1g4wR 383 7.44e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1ynfA 458 7.72e+01 1dy9A 187 7.73e+01 1jxpA b.47.1.3 26400 2f8lA 344 7.74e+01 1agjA 242 7.75e+01 1agjA b.47.1.1 25827 1nv8A 284 7.82e+01 c.66.1.30 86224 1b25A 619 7.82e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2hgf 97 7.88e+01 1bhtA g.10.1.1 44607 1sfxA 109 7.89e+01 a.4.5.50 105505 1z5bA 469 7.90e+01 1nf9A 207 7.93e+01 c.33.1.3 85631 1nh0A 99 7.95e+01 b.50.1.1 91869 1k2eA 156 7.95e+01 d.113.1.1 72010 1i40A 175 8.07e+01 b.40.5.1 66024 2c1iA 431 8.09e+01 2a67A 167 8.09e+01 2bg1A 494 8.14e+01 2f9cA 334 8.19e+01 1wgvA 124 8.23e+01 1x54A 434 8.24e+01 1o7nA 449 8.25e+01 b.33.1.2,d.129.3.3 81162,81163 1tqjA 230 8.33e+01 c.1.2.2 107228 1eteA 134 8.35e+01 1eteA a.26.1.2 16869 1jnrA 643 8.47e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1cunA 213 8.50e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1giqA 413 8.50e+01 d.166.1.1,d.166.1.1 76224,76225 2fjbA 643 8.52e+01 2a1hA 365 8.64e+01 2bgcA 238 8.70e+01 1ug3A 339 8.75e+01 1q44A 326 8.80e+01 c.37.1.5 95779 1gca 309 8.81e+01 1gca c.93.1.1 35659 1hruA 188 8.86e+01 1hruA d.115.1.1 40926 1qg8A 255 8.88e+01 1qg8A c.68.1.1 34505 1h2kA 349 8.91e+01 b.82.2.6 76572 1wd5A 208 8.95e+01 2gw6A 123 9.00e+01