# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mk4A 157 1.45e-03 d.108.1.1 84979 1ne9A 335 3.20e-02 d.108.1.4,d.108.1.4 91839,91840 1yvkA 163 1.23e-01 1hc7A 477 4.65e-01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1wwzA 159 7.50e-01 1twyA 290 8.63e-01 1iicA 422 1.01e+00 1nmtA d.108.1.2,d.108.1.2 62422,62423 1cjwA 166 1.19e+00 1cjwA d.108.1.1 40818 1z4eA 153 1.68e+00 1vhsA 175 1.95e+00 d.108.1.1 100698 1izcA 339 2.52e+00 c.1.12.5 83838 1s3zA 165 2.67e+00 d.108.1.1 105250 1xhkA 187 3.04e+00 1p0hA 318 3.31e+00 d.108.1.1 93866 1tiqA 180 3.33e+00 d.108.1.1 107010 1qf8A 182 3.37e+00 1qf8A g.41.4.1 45212 1y9kA 157 3.60e+00 1n71A 180 4.33e+00 d.108.1.1 85370 2b99A 156 4.40e+00 1cqqA 180 4.56e+00 1cqqA b.47.1.4 26422 2ge3A 170 4.70e+00 1sqhA 312 4.73e+00 d.108.1.5 98966 1x31D 99 4.76e+00 1z85A 234 4.92e+00 1rlzA 369 5.21e+00 c.31.1.1 104989 1hn2A 159 5.25e+00 b.60.1.1 65890 1gt1A 159 5.30e+00 b.60.1.1 90515 1t5yA 190 5.38e+00 b.122.1.1,d.17.6.3 106495,106496 1p7gA 222 5.61e+00 a.2.11.1,d.44.1.1 94223,94224 1z9hA 290 5.63e+00 1fs1B 141 5.64e+00 1vcbB a.157.1.1,d.42.1.1 19252,38664 2ccmA 191 5.99e+00 1wzlA 585 6.02e+00 1obpA 159 6.40e+00 1obpA b.60.1.1 27092 1hs6A 611 6.91e+00 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2a4nA 182 6.97e+00 2absA 383 7.40e+00 1jmvA 141 7.68e+00 c.26.2.4 66897 1ckv 141 7.85e+00 1ckv d.137.1.1 41452 1u34A 119 8.14e+00 g.76.1.1 107634 2af4C 333 8.40e+00 1dhs 344 8.42e+00 1dhs c.31.1.1 31727 1o98A 511 9.44e+00 c.105.1.1,c.76.1.3 86684,86685 1b04A 318 9.62e+00 1b04A d.142.2.2 41579 1qo7A 394 1.00e+01 1qo7A c.69.1.11 34697 1eqjA 511 1.02e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 2cb2A 318 1.04e+01 1sqwA 188 1.06e+01 2crbA 97 1.09e+01 1zo2A 129 1.11e+01 1liiA 363 1.11e+01 c.72.1.1 73921 1u9lA 70 1.12e+01 a.60.4.2 107751 1r5jA 337 1.12e+01 c.77.1.5 97097 1octC 156 1.14e+01 1au7A a.4.1.1,a.35.1.1 15991,17017 1x59A 73 1.16e+01 2aj6A 159 1.18e+01 1yx0A 159 1.18e+01 1xdpA 687 1.19e+01 1e3oC 160 1.26e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 2fliA 220 1.27e+01 1v77A 212 1.38e+01 c.6.3.2 108402 2gb7A 305 1.42e+01 1zl0A 311 1.43e+01 1lw7A 365 1.44e+01 c.26.1.3,c.37.1.1 74295,74296 2aunA 317 1.47e+01 1a53 247 1.50e+01 1a53 c.1.2.4 28564 1nd7A 374 1.51e+01 d.148.1.1 91817 1gpmA 525 1.55e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vfrA 218 1.56e+01 1vfrA d.90.1.1 40247 1o4wA 147 1.57e+01 c.120.1.1 86629 2hrvA 142 1.61e+01 2hrvA b.47.1.4 26429 1h2wA 710 1.62e+01 b.69.7.1,c.69.1.4 76596,76597 1tidB 119 1.63e+01 c.13.2.1 107000 1pgvA 197 1.68e+01 c.10.1.1 88073 1t0tV 248 1.71e+01 d.58.4.10 106229 1igs 248 1.74e+01 1a53 c.1.2.4 28565 1u8vA 490 1.76e+01 1xbbA 291 1.78e+01 1wtyA 119 1.79e+01 1qfmA 710 1.83e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 1lcyA 325 1.83e+01 b.36.1.4,b.47.1.1 73834,73835 2fo1D 85 1.84e+01 1lrzA 426 1.90e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1fm0E 150 1.96e+01 1fmaE d.41.5.1 38629 1wz7A 111 1.98e+01 1ounA 127 1.99e+01 1ounA d.17.4.2 38090 2c71A 216 2.00e+01 1eziA 228 2.00e+01 1eyrA c.68.1.13 34512 1zrsA 317 2.02e+01 1zu0A 529 2.02e+01 1kg0C 136 2.09e+01 d.169.1.1 72445 1jb7B 260 2.13e+01 1otcB b.40.4.3 62839 1vicA 262 2.14e+01 c.68.1.13 100756 2fe7A 166 2.17e+01 1gg3A 279 2.17e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2d4pA 141 2.19e+01 1kzkA 99 2.21e+01 b.50.1.1 73371 1pou 71 2.21e+01 1au7A a.35.1.1 17020 1w9gA 104 2.22e+01 1ru3A 732 2.29e+01 e.26.1.3 97835 1k8kA 418 2.30e+01 c.55.1.1,c.55.1.1 68305,68306 2fbyA 205 2.32e+01 2aumA 317 2.37e+01 2glfA 450 2.37e+01 1cfr 285 2.38e+01 1cfr c.52.1.7 33312 2cvjA 180 2.41e+01 1uf3A 228 2.49e+01 d.159.1.6 99317 1yr0A 175 2.49e+01 1maz 221 2.49e+01 1maz f.1.4.1 43393 2aboA 136 2.50e+01 1ihcA 188 2.51e+01 1di6A c.57.1.1 62379 2cy2A 174 2.52e+01 1egpA 45 2.60e+01 1egpA d.40.1.1 38561 1r5eA 115 2.63e+01 1jljA 189 2.72e+01 c.57.1.1 63169 1k6xA 352 2.74e+01 c.2.1.2 68238 1l2tA 235 2.76e+01 c.37.1.12 73514 1f0nA 285 2.78e+01 1dqyA c.69.1.3 34636 1j5vA 351 2.80e+01 c.72.1.1 71585 1nr3A 122 2.81e+01 d.236.1.1 86092 1zbpA 273 2.82e+01 1ro5A 201 2.86e+01 d.108.1.3 105023 1gy6A 127 2.87e+01 d.17.4.2 70736 1eiwA 111 2.87e+01 1eiwA c.23.3.1 31130 1b87A 181 2.89e+01 1b87A d.108.1.1 40797 1kyqA 274 2.93e+01 c.2.1.11,e.37.1.1 73281,73282 1f44A 324 2.98e+01 a.60.9.1,d.163.1.1 64982,64983 2fomB 185 3.02e+01 1nu7D 282 3.03e+01 a.8.6.1,a.8.6.1 92191,92192 1dc1A 323 3.06e+01 1dc1A c.52.1.11 33321 4crxA 322 3.08e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1f6vA 91 3.13e+01 1f6vA a.49.1.1 17791 1z7aA 308 3.16e+01 2cwoA 197 3.19e+01 1ush 550 3.23e+01 1ush d.114.1.1,d.159.1.2 40923,42079 1g8mA 593 3.28e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1fjgT 106 3.29e+01 1fjfT a.7.6.1 16338 1xgkA 352 3.36e+01 1n4kA 381 3.36e+01 a.118.22.1,b.42.6.1 79992,79993 2c27A 315 3.48e+01 2bhuA 602 3.55e+01 1dqzA 280 3.59e+01 1dqyA c.69.1.3 34638 1mba 147 3.66e+01 2fal a.1.1.2 15149 1x3lA 440 3.80e+01 1wgvA 124 3.81e+01 1hp1A 516 3.85e+01 d.114.1.1,d.159.1.2 70976,70977 2a6tA 271 3.94e+01 1xo0A 324 3.99e+01 2cvbA 188 4.07e+01 1hlvA 131 4.08e+01 a.4.1.7,a.4.1.7 65854,65855 2bg1A 494 4.16e+01 1oi7A 288 4.22e+01 c.2.1.8,c.23.4.1 87049,87050 1gk9A 260 4.29e+01 d.153.1.2 65246 1f9vA 347 4.33e+01 1bg2 c.37.1.9 59745 1it2A 146 4.35e+01 a.1.1.2 66365 1uteA 313 4.36e+01 1uteA d.159.1.1 42078 1svdA 473 4.43e+01 1o7nA 449 4.81e+01 b.33.1.2,d.129.3.3 81162,81163 1tqjA 230 4.92e+01 c.1.2.2 107228 2c1gA 431 4.95e+01 1nf8A 207 5.01e+01 c.33.1.3 85630 1tv8A 340 5.02e+01 c.1.28.3 107352 3chbD 104 5.04e+01 3chbD b.40.2.1 24970 1uedA 406 5.07e+01 a.104.1.1 99256 1puiA 210 5.42e+01 c.37.1.8 88292 2ftuA 118 5.47e+01 2bolA 314 5.48e+01 2gw6A 123 5.54e+01 1o20A 427 5.60e+01 c.82.1.1 86556 1h7sA 365 5.62e+01 d.14.1.3,d.122.1.2 65705,65706 1difA 99 5.72e+01 1fmb b.50.1.1 26503 1ois 223 5.78e+01 1a36A e.15.1.1 43267 1bsmA 201 5.78e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1hj8A 222 5.81e+01 b.47.1.2 65844 1poc 134 5.85e+01 1poc a.133.1.1 19513 1ovxA 67 5.90e+01 g.39.1.11 93622 1gy7A 125 5.94e+01 d.17.4.2 70738 2bl1A 172 6.04e+01 1j7qA 86 6.06e+01 1j7rA a.39.1.5 62700 1sz9A 144 6.14e+01 a.118.9.4 106139 1lr0A 129 6.15e+01 d.212.1.1 74213 2tbs 222 6.22e+01 5ptp b.47.1.2 26009 1ej6D 418 6.24e+01 i.7.1.1 45970 1wguA 136 6.26e+01 1k2yX 463 6.27e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1v39 322 6.34e+01 3mag c.66.1.25 34206 1wd5A 208 6.34e+01 3mag 307 6.35e+01 3mag c.66.1.25 34205 2g5cA 281 6.40e+01 1vsrA 136 6.48e+01 1vsrA c.52.1.15 33332 1qg8A 255 6.58e+01 1qg8A c.68.1.1 34505 1d4oA 184 6.62e+01 1d4oA c.31.1.4 31748 1eexG 173 6.63e+01 1dioG a.23.2.1 16490 1v8aA 265 6.67e+01 c.72.1.2 100494 2gk4A 232 6.68e+01 1zcoA 262 6.68e+01 1h2kA 349 6.70e+01 b.82.2.6 76572 1af3 196 6.71e+01 1maz f.1.4.1 43397 1xmxA 385 6.77e+01 1nslA 184 6.77e+01 d.108.1.1 86137 1q3yA 42 6.80e+01 g.40.1.1 104530 1ep0A 185 6.82e+01 1dzrA b.82.1.1 28080 1vp9 322 6.88e+01 3mag c.66.1.25 34210 2btfA 375 6.97e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1vyoA 128 6.99e+01 1v0dA 329 7.19e+01 d.4.1.7 108204 2gwgA 350 7.26e+01 2f9cA 334 7.35e+01 1nf9A 207 7.38e+01 c.33.1.3 85631 1djrD 103 7.40e+01 3chbD b.40.2.1 24865 1gox 370 7.53e+01 1gox c.1.4.1 28607 1sgjA 284 7.62e+01 c.1.12.5 105535 1nh0A 99 7.63e+01 b.50.1.1 91869 1x4rA 99 7.70e+01 1bebA 162 7.81e+01 1bebA b.60.1.1 27115 2aawA 222 7.82e+01 1laxA 370 7.86e+01 c.94.1.1 84576 2ga9A 297 7.94e+01 1ia9A 280 7.94e+01 1ia9A d.144.1.5 62113 2bkkA 264 7.96e+01 1ec7A 446 7.99e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1z08A 170 8.05e+01 2camA 127 8.06e+01 1swuA b.61.1.1 27407 1vmeA 410 8.07e+01 c.23.5.1,d.157.1.3 108893,108894 1yarO 237 8.09e+01 1e5kA 201 8.13e+01 1fr9A c.68.1.8 34578 1pq1A 196 8.15e+01 f.1.4.1 94986 1bzg 34 8.19e+01 1bzg j.15.1.1 46166 1zeeA 403 8.24e+01 1a0jA 223 8.27e+01 5ptp b.47.1.2 26002 1ieaA 192 8.31e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 1dpo 223 8.32e+01 5ptp b.47.1.2 25975 1h1dA 221 8.38e+01 c.66.1.1 83452 2bm8A 236 8.40e+01 1w4rA 195 8.55e+01 1pujA 282 8.57e+01 c.37.1.8 88294 1pymA 295 8.63e+01 1pymA c.1.12.7 29308 2cxaA 256 8.66e+01 1ravA 127 8.66e+01 1swuA b.61.1.1 27409 1mjhA 162 8.75e+01 1mjhA c.26.2.4 31639 1sseB 86 8.81e+01 2f9zC 159 8.82e+01 1tq8A 163 8.86e+01 c.26.2.4 107204 2bswA 146 8.93e+01 1ydwA 362 8.97e+01 1u46A 291 8.99e+01 d.144.1.7 107656