# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hs6A 611 3.44e+00 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1s57A 153 4.43e+00 2fg9A 178 4.95e+00 1tfe 145 5.33e+00 1tfe d.43.1.1 38680 1vk1A 242 5.43e+00 d.268.1.2 108634 1u6mA 199 6.00e+00 1pkp 150 6.97e+00 1pkp d.14.1.1,d.50.1.2 37551,38787 1rz3A 201 7.05e+00 c.37.1.6 98132 1stfI 98 7.10e+00 1stfI d.17.1.2 38006 1nv8A 284 7.32e+00 c.66.1.30 86224 1wekA 217 7.50e+00 1khyA 148 8.85e+00 a.174.1.1 77410 1r7jA 95 1.01e+01 a.4.5.49 104836 2bswA 146 1.20e+01 1wguA 136 1.38e+01 2ilk 160 1.80e+01 2ilk a.26.1.3 16885 1azsC 388 1.89e+01 1cipA a.66.1.1,c.37.1.8 18203,32086 1s6yA 450 1.93e+01 c.2.1.5,d.162.1.2 105314,105315 1ilk 151 2.01e+01 2ilk a.26.1.3 16886 1wkbA 810 2.04e+01 1x8gA 227 2.08e+01 1i12A 160 2.11e+01 1i21A d.108.1.1 61515 1vk8A 106 2.28e+01 d.58.48.1 108636 1lssA 140 2.36e+01 c.2.1.9 74246 2es7A 142 2.39e+01 1wjgA 137 2.69e+01 1y13A 181 2.76e+01 1vc1A 110 2.80e+01 c.13.2.1 108493 1xg8A 111 2.89e+01 1ub3A 220 3.08e+01 c.1.10.1 88395 2gu3A 136 3.24e+01 1kqpA 271 3.44e+01 c.26.2.1 72883 1ve3A 227 3.46e+01 2fl4A 149 3.49e+01 1nksA 194 3.49e+01 1nksA c.37.1.1 31886 1wr2A 238 3.52e+01 1zxxA 319 3.66e+01 1yz7A 188 3.71e+01 1vhsA 175 3.77e+01 d.108.1.1 100698 1o20A 427 3.80e+01 c.82.1.1 86556 1nsyA 271 3.89e+01 2nsyA c.26.2.1 31614 2nsyA 271 3.90e+01 2nsyA c.26.2.1 31612 2f7fA 494 4.07e+01 1bykA 255 4.16e+01 1bykA c.93.1.1 35706 1up7A 417 4.21e+01 1mqoA 227 4.23e+01 d.157.1.1 103846 1fjgM 126 4.23e+01 1fjfM a.156.1.1 16293 1a0oD 134 4.26e+01 1eayC d.58.24.1 39391 1lk3A 160 4.28e+01 a.26.1.3 73950 1j24A 143 4.31e+01 c.52.1.20 84008 1tiqA 180 4.32e+01 d.108.1.1 107010 1rt8A 513 4.37e+01 a.40.1.1 105095 1eljA 381 4.40e+01 4mbp c.94.1.1 35791 2bhuA 602 4.43e+01 1uq5A 263 4.48e+01 d.165.1.1 99778 1ih8A 271 4.54e+01 2nsyA c.26.2.1 62377 1ift 263 4.61e+01 1mrj d.165.1.1 42211 1pcp 106 4.70e+01 2pspA g.16.1.1,g.16.1.1 44742,44743 1ki9A 192 4.80e+01 c.37.1.1 84404 1obs 267 4.90e+01 1mrj d.165.1.1 42213 2cwlA 302 4.99e+01 2g0qA 173 5.06e+01 2bc2A 227 5.12e+01 1a7tA d.157.1.1 42031 1fwp 139 5.13e+01 1eayC d.58.24.1 39396 1o54A 277 5.13e+01 c.66.1.13 92482 1cg7A 93 5.22e+01 1cktA a.21.1.1 16428 1guxA 218 5.40e+01 1guxA a.74.1.3 18388 1fyvA 161 5.43e+01 1fyvA c.23.2.1 31127 2azjA 289 5.47e+01 1e79G 272 5.54e+01 1e79G c.49.2.1 33158 1v98A 140 5.54e+01 1jkgB 250 5.56e+01 d.17.4.2 66796 1odkA 235 5.57e+01 c.56.2.1 86863 1z4rA 168 5.59e+01 1i7pA 274 5.66e+01 b.43.4.2,c.25.1.1 66048,66049 1if1A 113 5.79e+01 2irfG a.4.5.23 16183 1bmc 221 5.85e+01 1a7tA d.157.1.1 42038 1qlmA 316 5.99e+01 1qlmA d.147.1.1 41765 1llp 343 6.00e+01 1arv a.93.1.1 18578 1pydA 556 6.06e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2fvgA 340 6.22e+01 1b9rA 105 6.22e+01 1ayfA d.15.4.1 37683 1an9A 340 6.23e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1jn5B 250 6.25e+01 d.17.4.2 66922 1v5iB 76 6.27e+01 2bc2B 227 6.34e+01 1a7tA d.157.1.1 42032 2cxxA 190 6.37e+01 1up6A 416 6.45e+01 c.2.1.5,d.162.1.2 107976,107977 1xypA 190 6.45e+01 1axkA b.29.1.11 24327 6pfkA 319 6.46e+01 3pfk c.89.1.1 35583 1m1hA 248 6.47e+01 b.114.1.1,d.58.42.1 78415,78416 1ezwA 349 6.53e+01 1ezwA c.1.16.3 29558 2a1xA 308 6.59e+01 1enxA 190 6.63e+01 1axkA b.29.1.11 24325 1f5mA 180 6.69e+01 1f5mB d.110.2.1 40895 2ligA 164 6.74e+01 1vls a.24.2.1 16530 1xwsA 313 6.80e+01 1mil 104 6.89e+01 1d4tA d.93.1.1 40496 1xk4C 113 6.97e+01 1i21A 159 7.07e+01 1i21A d.108.1.1 61549 1itpA 77 7.16e+01 d.58.3.2 66371 1bby 69 7.26e+01 2bby a.4.5.15 16149 1swxA 209 7.49e+01 a.224.1.1 106075 1yvkA 163 7.58e+01 1jmvA 141 7.59e+01 c.26.2.4 66897 1x8hA 228 7.63e+01 1j6pA 418 7.65e+01 b.92.1.4,c.1.9.9 77089,77090 1lsuA 147 7.77e+01 c.2.1.9 74250 1qysA 106 7.89e+01 k.41.1.1 96603 1wd5A 208 7.89e+01 1o77C 146 7.93e+01 c.23.2.1 81127 1a4iA 301 8.05e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 2bby 69 8.17e+01 2bby a.4.5.15 16148 1kt8A 365 8.43e+01 e.17.1.1 77531 1nmeB 92 8.44e+01 1dljA 402 8.46e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2a9sA 171 8.53e+01 1uby 367 8.67e+01 1uby a.128.1.1 19435 1u55A 188 8.71e+01 d.278.1.1 107677 1fps 348 8.73e+01 1uby a.128.1.1 19436 1pv1A 299 8.78e+01 1brlA 355 8.83e+01 1lucA c.1.16.1 29553