# List of top-scoring protein chains for T0372.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ryaA 160 3.31e+00 d.113.1.5 105122 2fafA 608 4.42e+00 1qqdB 99 4.85e+00 1agdB b.1.1.2 20770 3fruB 99 5.40e+00 1agdB b.1.1.2 20658 1kjvB 100 5.44e+00 b.1.1.2 77423 1py4A 100 6.26e+00 b.1.1.2 95323 1hlaM 97 6.34e+00 1agdB b.1.1.2 20669 1x7qB 99 6.42e+00 1k5nB 100 6.47e+00 b.1.1.2 77268 1ypzB 102 6.69e+00 2f53B 100 6.79e+00 1ce6B 108 7.13e+00 1agdB b.1.1.2 20820 1vhoA 346 7.52e+00 b.49.3.1,c.56.5.4 100694,100695 1ao7B 100 7.82e+00 1agdB b.1.1.2 20697 1ddhB 99 9.10e+00 1agdB b.1.1.2 20846 1lk2B 99 9.10e+00 b.1.1.2 91058 2fikB 99 9.11e+00 1rjyB 100 9.17e+00 1qo3B 100 9.19e+00 1agdB b.1.1.2 20842 1biiB 119 1.00e+01 1agdB b.1.1.2 20844 2f8oA 100 1.10e+01 1wr2A 238 1.47e+01 2cuyA 305 1.68e+01 2fiqA 420 1.82e+01 2a9uA 144 2.17e+01 1avbA 226 2.18e+01 1led b.29.1.1 24158 1jb0B 740 2.28e+01 1jb0A f.29.1.1 62821 1aa7A 158 2.44e+01 1aa7A a.95.1.1 18741 1ea3A 164 2.53e+01 1aa7A a.95.1.1 59398 1k4mA 213 2.63e+01 c.26.1.3 77258 1y0yA 353 3.13e+01 1xfoA 357 3.16e+01 1vjeA 166 3.18e+01 d.185.1.2 100807 4thiA 362 3.30e+01 2thiA c.94.1.1 35793 1vhmA 195 3.31e+01 d.110.2.1 100691 1m56C 266 3.33e+01 f.25.1.1 74474 3thiA 371 3.36e+01 2thiA c.94.1.1 35792 2thiA 379 3.38e+01 2thiA c.94.1.1 35794 1fgp 70 3.45e+01 1g3p b.37.1.1 24795 1zvdA 380 3.58e+01 1xnd 190 3.97e+01 1axkA b.29.1.11 24321 1tolA 222 3.98e+01 1g3p b.37.1.1,d.212.1.1 24790,39587 1a0p 290 4.06e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1xzh 214 4.28e+01 1cex c.69.1.30 31293 2f2fC 186 4.59e+01 1y5iA 1246 4.67e+01 1q16A 1247 4.67e+01 b.52.2.2,c.81.1.1 95546,95547 1tyyA 339 4.74e+01 1im5A 180 4.79e+01 c.33.1.3 66211 1p22B 145 4.86e+01 a.157.1.1,d.42.1.1 87717,87718 1g3p 217 4.88e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 1a1s 314 4.90e+01 1othA c.78.1.1,c.78.1.1 35258,35259 1pvvA 315 4.94e+01 c.78.1.1,c.78.1.1 95190,95191 1wa3A 205 5.12e+01 1qleA 538 5.13e+01 2occA f.24.1.1 43620 1ar1A 558 5.20e+01 2occA f.24.1.1 43618 1vlwA 217 5.24e+01 c.1.10.1 108868 1t57A 206 5.31e+01 c.49.1.2 106430 1wuoA 228 5.43e+01 1h6zA 913 5.62e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1dkqA 410 5.71e+01 1dklA c.60.1.2 33998 1cfr 285 5.71e+01 1cfr c.52.1.7 33312 1vpqA 273 5.74e+01 1dklA 410 5.75e+01 1dklA c.60.1.2 33996 1dkmA 410 5.75e+01 1dklA c.60.1.2 34000 1m1cA 680 5.80e+01 e.42.1.1 78395 2a0lD 116 5.81e+01 2cqxA 72 5.86e+01 1f3uA 118 5.97e+01 1f3uA b.65.1.1 27521 1mfaH 120 6.07e+01 2g3pA 225 6.09e+01 1g3p b.37.1.1,b.37.1.1 24791,24792 2gfoA 396 6.12e+01 2bvdA 283 6.25e+01 2bv9A 290 6.29e+01 1xypA 190 6.37e+01 1axkA b.29.1.11 24327 1aniA 446 6.48e+01 1b8jA c.76.1.1 35018 1anjA 446 6.53e+01 1b8jA c.76.1.1 35008 1jsg 114 6.75e+01 1a1x b.63.1.1 27513 1fqvB 149 7.30e+01 1fqvD a.157.1.1,d.42.1.1 19262,38666 2f1xA 161 7.66e+01 1alkA 449 7.79e+01 1b8jA c.76.1.1 34994 2anhA 446 7.79e+01 1b8jA c.76.1.1 35004 1uraA 446 7.80e+01 1b8jA c.76.1.1 35002 1elxA 449 7.85e+01 1b8jA c.76.1.1 35026 1hqaA 449 7.86e+01 1b8jA c.76.1.1 34998 1y6vA 449 7.86e+01 1aliA 449 7.86e+01 1b8jA c.76.1.1 34996 1ajaA 449 7.87e+01 1b8jA c.76.1.1 35010 1elyA 449 7.88e+01 1b8jA c.76.1.1 35028 1elzA 449 7.89e+01 1b8jA c.76.1.1 35022 1hjkA 449 7.91e+01 1b8jA c.76.1.1 35006 1khjA 449 7.96e+01 c.76.1.1 72481 1kzhA 555 7.98e+01 c.89.1.1 73361 1m57A 566 8.00e+01 f.24.1.1 74481 1m56A 566 8.00e+01 f.24.1.1 74471 1kh7A 449 8.02e+01 c.76.1.1 72477 1kh5A 449 8.03e+01 c.76.1.1 72475 1jkgB 250 8.06e+01 d.17.4.2 66796 1meeA 275 8.18e+01 1gci c.41.1.1 32540 2f1wA 158 8.22e+01 2fojA 155 8.23e+01 1b77A 228 8.51e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 2c1cA 312 8.58e+01 2f1yA 159 8.59e+01 1f9aA 168 8.68e+01 1f9aA c.26.1.3 31602 1ypfA 336 8.70e+01 1vaeA 111 8.72e+01 b.36.1.1 108466 1kb9J 127 8.91e+01 b.1.1.1 77325 1qfwH 117 8.93e+01 1gc1H b.1.1.1 20435 1hfx 123 8.99e+01 3lzt d.2.1.2 36600