# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d4pA 141 1.15e-01 1vjeA 166 3.98e-01 d.185.1.2 100807 1zbfA 142 4.30e-01 1oj4A 283 1.07e+00 d.14.1.5,d.58.26.5 93083,93084 1zejA 293 1.15e+00 1vc1A 110 1.16e+00 c.13.2.1 108493 1z4rA 168 1.41e+00 2bh1X 96 1.83e+00 1rxyA 253 1.98e+00 c.56.2.1 98065 1pjcA 361 2.22e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 2fg1A 158 2.39e+00 1g3p 217 3.09e+00 1g3p b.37.1.1,b.37.1.1 24788,24789 1zo0A 126 3.25e+00 1dj0A 264 3.30e+00 1dj0A d.265.1.1 90337 2a1hA 365 3.46e+00 1gw5S 142 3.48e+00 d.110.4.2 70633 1d1gA 168 3.63e+00 1d1gA c.71.1.1 34889 1a8s 273 4.00e+00 1brt c.69.1.12 34710 2g3aA 152 4.26e+00 1jysA 242 4.45e+00 c.56.2.1 77216 1xm7A 195 4.90e+00 1t6aA 126 4.94e+00 d.129.8.1 106555 1vhsA 175 5.58e+00 d.108.1.1 100698 1ryaA 160 5.88e+00 d.113.1.5 105122 1qlmA 316 6.27e+00 1qlmA d.147.1.1 41765 1vj1A 363 6.41e+00 b.35.1.2,c.2.1.1 100794,100795 2beiA 170 7.02e+00 1wsrA 375 7.77e+00 1h3qA 140 7.85e+00 d.110.4.3 76652 1szoA 257 8.40e+00 c.14.1.3 106164 1xtoA 311 8.47e+00 2a2nA 176 8.68e+00 1p3dA 475 8.75e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1i12A 160 8.79e+00 1i21A d.108.1.1 61515 2fg9A 178 9.16e+00 2bsxA 253 9.71e+00 2gd9A 189 9.85e+00 1kdj 102 1.00e+01 1plc b.6.1.1 22864 1ypfA 336 1.03e+01 1g2rA 100 1.05e+01 1g2rA d.192.1.1 60231 1kblA 873 1.05e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1pjhA 280 1.10e+01 c.14.1.3 94761 1tt7A 330 1.12e+01 1m2xA 223 1.14e+01 d.157.1.1 84764 1ktgA 138 1.15e+01 d.113.1.1 72972 1rf6A 427 1.15e+01 d.68.2.2 97366 1vk8A 106 1.17e+01 d.58.48.1 108636 2bswA 146 1.19e+01 1yt3A 375 1.22e+01 2ptd 298 1.23e+01 2plc c.1.18.2 29605 1xc3A 302 1.24e+01 2plc 274 1.25e+01 2plc c.1.18.2 29614 1ct5A 256 1.35e+01 1ct5A c.1.6.2 28663 1x8gA 227 1.38e+01 1srqA 341 1.38e+01 e.55.1.1 105967 2a1iA 146 1.39e+01 1hi9A 274 1.40e+01 1hi9A c.99.1.1 61063 1x8hA 228 1.40e+01 1wnaA 131 1.41e+01 2hvm 273 1.45e+01 1cnv c.1.8.5 28985 1zvdA 380 1.48e+01 1ec7A 446 1.48e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1th0A 226 1.52e+01 d.3.1.7 106903 1qstA 160 1.56e+01 1yghA d.108.1.1 40804 1prxA 224 1.57e+01 1prxA c.47.1.10 33076 1d1qA 161 1.59e+01 1dg9A c.44.1.1 32642 1v37A 177 1.64e+01 1c4oA 664 1.65e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 2fz4A 237 1.71e+01 1kyhA 276 1.75e+01 c.72.1.4 73222 1cliA 345 1.81e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1sviA 195 1.85e+01 c.37.1.8 106048 1jf8A 131 1.86e+01 c.44.1.1 66621 1nv8A 284 1.87e+01 c.66.1.30 86224 1oaoC 729 1.88e+01 e.26.1.3 86746 1o20A 427 1.95e+01 c.82.1.1 86556 1yb2A 275 1.99e+01 1sl4A 155 2.00e+01 d.169.1.1 105710 1o0yA 260 2.03e+01 c.1.10.1 80756 1lucA 355 2.14e+01 1lucA c.1.16.1 29547 1mwpA 96 2.20e+01 1mwpA d.170.2.1 42453 1q67A 231 2.22e+01 b.55.1.7 95960 1lssA 140 2.24e+01 c.2.1.9 74246 1p4cA 380 2.25e+01 c.1.4.1 94100 1hyvA 166 2.27e+01 1b9dA c.55.3.2 61424 1wduA 245 2.32e+01 d.151.1.1 109286 1cnv 299 2.33e+01 1cnv c.1.8.5 28989 1uq5A 263 2.38e+01 d.165.1.1 99778 1pz7A 204 2.42e+01 b.29.1.4 95405 1jetA 517 2.49e+01 1jevA c.94.1.1 35718 1usyA 275 2.50e+01 1yqdA 366 2.53e+01 1w6vA 141 2.56e+01 1xt8A 292 2.57e+01 2fymA 431 2.68e+01 1ki9A 192 2.69e+01 c.37.1.1 84404 1yw4A 341 2.80e+01 1ixcA 294 2.84e+01 a.4.5.37,c.94.1.1 83764,83765 1lxjA 104 2.85e+01 d.58.48.1 84736 1yrtA 364 2.86e+01 1j8mF 297 2.86e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1d3gA 367 2.87e+01 1d3gA c.1.4.1 28600 1n6zA 105 2.88e+01 d.263.1.1 85369 1ik9A 213 2.88e+01 b.59.1.1,h.1.11.1 66176,66177 1mw7A 240 3.01e+01 e.39.1.1 79557 1v6tA 255 3.01e+01 1yqhA 109 3.03e+01 1wu7A 434 3.20e+01 1z85A 234 3.20e+01 1nnvA 110 3.21e+01 d.17.7.1 92012 1h2bA 359 3.27e+01 b.35.1.2,c.2.1.1 90543,90544 1zosA 230 3.39e+01 1p99A 295 3.47e+01 c.94.1.1 94384 1ne9A 335 3.56e+01 d.108.1.4,d.108.1.4 91839,91840 1vquA 374 3.57e+01 1uh5A 329 3.62e+01 c.2.1.2 107840 1xewX 182 3.67e+01 1fpzA 212 3.69e+01 1fpzA c.45.1.1 59976 1jykA 254 3.70e+01 c.68.1.13 67458 1ylqA 96 3.81e+01 1khtA 192 3.84e+01 c.37.1.1 84401 1uv7A 110 3.90e+01 d.67.4.1 100040 1yz4A 160 3.92e+01 1uekA 275 3.92e+01 d.14.1.5,d.58.26.5 88483,88484 1w7jB 151 3.96e+01 2aefA 234 3.96e+01 1yw3A 208 4.02e+01 1f74A 293 4.07e+01 1nal3 c.1.10.1 29079 1wy7A 207 4.10e+01 1ro2A 216 4.13e+01 d.264.1.2 97665 1id1A 153 4.15e+01 1id1A c.2.1.9 62286 2awpA 198 4.20e+01 1vpqA 273 4.22e+01 1h75A 81 4.23e+01 1h75A c.47.1.1 60716 8abp 306 4.23e+01 8abp c.93.1.1 35647 1j98A 157 4.26e+01 1j98A d.185.1.2 62755 1a41 234 4.28e+01 1a41 d.163.1.2 42174 1lwdA 413 4.37e+01 c.77.1.1 78265 1onrA 316 4.37e+01 1onrA c.1.10.1 29169 1b00A 127 4.37e+01 3chy c.23.1.1 31122 2g5cA 281 4.38e+01 2bogX 286 4.39e+01 1ojrA 274 4.40e+01 c.74.1.1 93147 1t71A 281 4.44e+01 1t95A 240 4.45e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1akz 223 4.47e+01 3eugA c.18.1.1 31007 1l8aA 886 4.49e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1kqpA 271 4.50e+01 c.26.2.1 72883 1on0A 158 4.61e+01 d.108.1.1 87095 1qmvA 197 4.62e+01 1qq2A c.47.1.10 33066 1j6wA 175 4.63e+01 1j98A d.185.1.2 62663 1sr8A 298 4.65e+01 e.54.1.1 105959 1u04A 771 4.73e+01 b.34.14.1,c.55.3.10 107539,107540 1earA 147 4.74e+01 b.107.1.1,d.58.38.1 64875,64876 1khiA 176 4.76e+01 b.34.5.2,b.40.4.5 77408,77409 1wdnA 226 4.79e+01 1lst c.94.1.1 35816 1wyzA 242 4.86e+01 1e8cA 498 4.89e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1xo7A 166 5.00e+01 1ns5A 155 5.02e+01 c.116.1.3 80705 1a53 247 5.04e+01 1a53 c.1.2.4 28564 1k8rB 110 5.14e+01 d.15.1.5 72180 1mtyB 384 5.15e+01 1mtyB a.25.1.2 16740 2c43A 323 5.19e+01 1je0A 236 5.27e+01 c.56.2.1 66581 1v2dA 381 5.30e+01 c.67.1.1 108281 1ygmA 118 5.32e+01 1vk1A 242 5.35e+01 d.268.1.2 108634 1y7rA 133 5.44e+01 1hxhA 253 5.50e+01 c.2.1.2 76725 1hruA 188 5.56e+01 1hruA d.115.1.1 40926 2akaB 299 5.57e+01 1o0xA 262 5.58e+01 d.127.1.1 80755 1y9wA 140 5.61e+01 1t4oA 117 5.63e+01 d.50.1.1 106425 1v8bA 479 5.70e+01 1txdA 385 5.83e+01 a.87.1.1,b.55.1.1 107422,107423 1up7A 417 5.84e+01 1s62A 106 5.87e+01 1ro0A 216 5.95e+01 d.264.1.2 97664 1poiB 260 5.96e+01 1poiB c.124.1.3 34155 1va4A 279 6.03e+01 c.69.1.12 108458 1y1pA 342 6.05e+01 2ex4A 241 6.08e+01 1yvoA 172 6.10e+01 1u9iA 519 6.20e+01 2bhuA 602 6.28e+01 1hrhA 136 6.31e+01 1rthA c.55.3.1 33577 1mgtA 174 6.36e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1xkpC 143 6.37e+01 1fehA 574 6.39e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1k8kB 394 6.41e+01 c.55.1.1 68307 1u6tA 121 6.44e+01 1q8iA 783 6.52e+01 c.55.3.5,e.8.1.1 96208,96209 2exnA 136 6.60e+01 1yrkA 126 6.69e+01 1x9zA 188 6.73e+01 1sjdA 368 6.91e+01 c.1.11.2,d.54.1.1 105632,105633 1tp9A 162 6.97e+01 2fpmA 322 7.01e+01 1zu4A 320 7.01e+01 1v4pA 157 7.01e+01 2d2eA 250 7.01e+01 1nh2B 53 7.12e+01 a.32.1.1 91874 2d1yA 256 7.18e+01 1g38A 393 7.20e+01 2admA c.66.1.27 60235 1qh5A 260 7.35e+01 1qh5A d.157.1.2 42057 1othA 321 7.45e+01 1othA c.78.1.1,c.78.1.1 35260,35261 2a5yB 549 7.51e+01 1u55A 188 7.67e+01 d.278.1.1 107677 2gkpA 167 7.68e+01 1dqaA 467 7.74e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1ll2A 333 7.76e+01 c.68.1.14 74005 1b7yB 785 7.81e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2c6qA 351 7.82e+01 2afdA 88 8.02e+01 1vybA 238 8.02e+01 d.151.1.1 108897 2bkaA 242 8.06e+01 1hw7A 255 8.18e+01 1i7fA d.193.1.1 61297 1fg7A 356 8.19e+01 1gewA c.67.1.1 59819 1s12A 94 8.20e+01 2c5qA 240 8.24e+01 1l0qA 391 8.25e+01 b.1.3.1,b.69.2.3 77644,77645 2arzA 247 8.30e+01 1ryiA 382 8.32e+01 1t4nA 94 8.45e+01 d.50.1.1 106424 1j24A 143 8.45e+01 c.52.1.20 84008 1wy1A 172 8.45e+01 1ydyA 356 8.50e+01 1r77A 103 8.52e+01 2cvlA 124 8.54e+01 1qtwA 285 8.73e+01 1qumA c.1.15.1 29392 2dg5A 366 8.82e+01 1hjrA 158 8.82e+01 1hjrA c.55.3.6 33727 8rucI 123 8.94e+01 1rboC d.73.1.1 39629 1k2eA 156 8.99e+01 d.113.1.1 72010 1jljA 189 9.00e+01 c.57.1.1 63169