# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z4rA 168 1.65e+00 2fg9A 178 1.72e+00 1ki9A 192 2.25e+00 c.37.1.1 84404 1xt8A 292 2.54e+00 1evlA 401 2.61e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 1lqtA 456 2.95e+00 c.3.1.1,c.4.1.1 74198,74199 1vc1A 110 3.06e+00 c.13.2.1 108493 1qstA 160 3.17e+00 1yghA d.108.1.1 40804 1pjcA 361 3.58e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 2fg1A 158 4.26e+00 2plc 274 4.49e+00 2plc c.1.18.2 29614 2a1iA 146 4.64e+00 1wr2A 238 5.11e+00 1bykA 255 5.35e+00 1bykA c.93.1.1 35706 1vk1A 242 6.60e+00 d.268.1.2 108634 1xypA 190 6.75e+00 1axkA b.29.1.11 24327 2d4pA 141 6.90e+00 1yqhA 109 7.51e+00 1vjeA 166 8.20e+00 d.185.1.2 100807 2gfhA 260 8.92e+00 1vk8A 106 9.40e+00 d.58.48.1 108636 2au3A 407 9.45e+00 1ed8A 449 9.81e+00 1b8jA c.76.1.1 34988 2bkyX 89 9.97e+00 1ygmA 118 1.09e+01 1h75A 81 1.13e+01 1h75A c.47.1.1 60716 1t0qA 498 1.20e+01 a.25.1.2 106220 1zczA 464 1.22e+01 1vqoX 92 1.24e+01 1d1qA 161 1.28e+01 1dg9A c.44.1.1 32642 1wekA 217 1.34e+01 1cfr 285 1.35e+01 1cfr c.52.1.7 33312 1khyA 148 1.36e+01 a.174.1.1 77410 1t6gC 184 1.48e+01 b.29.1.11 106569 2g0qA 173 1.49e+01 1yz7A 188 1.52e+01 1odoA 408 1.58e+01 a.104.1.1 92783 1akz 223 1.58e+01 3eugA c.18.1.1 31007 1fr2A 86 1.59e+01 a.28.2.1 83256 1wtjA 343 1.62e+01 1m2xA 223 1.63e+01 d.157.1.1 84764 1sqiA 393 1.65e+01 d.32.1.3,d.32.1.3 105914,105915 1vqzA 341 1.69e+01 1vp8A 201 1.73e+01 1yt3A 375 1.74e+01 1pzxA 289 1.74e+01 c.119.1.1 95484 1h1dA 221 1.78e+01 c.66.1.1 83452 1pvvA 315 1.84e+01 c.78.1.1,c.78.1.1 95190,95191 1oj4A 283 1.87e+01 d.14.1.5,d.58.26.5 93083,93084 2aq5A 402 1.88e+01 1m5q1 130 1.89e+01 1lk9A 448 1.91e+01 c.67.1.1 78057 1l3iA 192 1.92e+01 c.66.1.22 77676 1ezwA 349 2.03e+01 1ezwA c.1.16.3 29558 2dg5A 366 2.04e+01 1e8gA 560 2.05e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1wy1A 172 2.08e+01 1zbfA 142 2.21e+01 1d2nA 272 2.22e+01 1d2nA c.37.1.20 32428 2bswA 146 2.22e+01 1fs1B 141 2.23e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1g3p 217 2.27e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 1wstA 417 2.28e+01 1a3aA 148 2.31e+01 1a3aA d.112.1.1 40917 1r77A 103 2.37e+01 2bmfA 451 2.37e+01 1cnv 299 2.43e+01 1cnv c.1.8.5 28989 1yna 194 2.52e+01 1axkA b.29.1.11 24335 2fymA 431 2.52e+01 2aefA 234 2.63e+01 1s2oA 244 2.64e+01 1wozA 177 2.66e+01 2blfB 81 2.67e+01 1nv8A 284 2.68e+01 c.66.1.30 86224 1pvxA 194 2.68e+01 1axkA b.29.1.11 24341 1dj0A 264 2.70e+01 1dj0A d.265.1.1 90337 1q7lA 198 2.71e+01 c.56.5.4 96044 1f0xA 571 2.72e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1xauA 122 2.72e+01 1zarA 282 2.75e+01 1ro0A 216 2.76e+01 d.264.1.2 97664 1ad2 228 2.76e+01 1ad2 e.24.1.1 43353 1wcgA 464 2.77e+01 1e5kA 201 2.86e+01 1fr9A c.68.1.8 34578 1zccA 248 2.88e+01 1lssA 140 2.96e+01 c.2.1.9 74246 1sauA 115 3.10e+01 1ro2A 216 3.13e+01 d.264.1.2 97665 2a7yA 83 3.13e+01 2ptd 298 3.21e+01 2plc c.1.18.2 29605 1huxA 270 3.23e+01 1huxA c.55.1.5 61278 1np6A 174 3.27e+01 c.37.1.10 85954 1e8aA 91 3.27e+01 1b4cA a.39.1.2 17188 1dgnA 89 3.28e+01 1dgnA a.77.1.3 18436 2f5xA 312 3.30e+01 1u6tA 121 3.41e+01 1xkrA 206 3.42e+01 1d2mA 665 3.50e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 2oatA 439 3.50e+01 2dkb c.67.1.4 34452 1wf3A 301 3.52e+01 1go3F 107 3.56e+01 a.60.8.2 65407 1wmqA 147 3.59e+01 1kqpA 271 3.60e+01 c.26.2.1 72883 1eexB 224 3.61e+01 1dioB c.51.3.1 33213 1qx4A 274 3.62e+01 b.43.4.2,c.25.1.1 104624,104625 1bjaA 95 3.65e+01 1bjaA a.4.5.9 16122 1q77A 138 3.65e+01 c.26.2.4 96023 1rz3A 201 3.68e+01 c.37.1.6 98132 1pvdA 537 3.73e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1u9iA 519 3.83e+01 1x7oA 287 3.84e+01 2c31A 568 3.86e+01 1ixh 321 3.87e+01 1ixh c.94.1.1 35761 1x9zA 188 3.90e+01 1o0xA 262 3.96e+01 d.127.1.1 80755 1th0A 226 3.96e+01 d.3.1.7 106903 1oc2A 348 3.99e+01 c.2.1.2 92765 1gnxA 479 4.08e+01 c.1.8.4 76241 1bby 69 4.10e+01 2bby a.4.5.15 16149 1zxxA 319 4.16e+01 1wpuA 147 4.37e+01 1vrmA 325 4.38e+01 1mrzA 293 4.38e+01 b.43.5.1,c.26.1.3 91452,91453 1ceo 343 4.39e+01 1ceo c.1.8.3 28808 1im5A 180 4.55e+01 c.33.1.3 66211 2iv2X 715 4.56e+01 1wjgA 137 4.63e+01 1vhsA 175 4.67e+01 d.108.1.1 100698 1t6sA 162 4.79e+01 1yrtA 364 4.89e+01 5nul 138 4.93e+01 5nul c.23.5.1 31191 1c4oA 664 4.95e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1colA 204 5.10e+01 1a87 f.1.1.1 43378 1t4oA 117 5.11e+01 d.50.1.1 106425 1x67A 146 5.11e+01 1o22A 170 5.26e+01 d.238.1.1 86557 2hvm 273 5.26e+01 1cnv c.1.8.5 28985 2f94F 350 5.29e+01 1wu7A 434 5.35e+01 1i12A 160 5.39e+01 1i21A d.108.1.1 61515 1mtyB 384 5.39e+01 1mtyB a.25.1.2 16740 1hdcA 253 5.42e+01 1e6wA c.2.1.2 29862 1xc3A 302 5.49e+01 1xnkA 196 5.56e+01 2ftrA 108 5.56e+01 1sjiA 350 5.56e+01 1khtA 192 5.58e+01 c.37.1.1 84401 1mqoA 227 5.61e+01 d.157.1.1 103846 8rucI 123 5.61e+01 1rboC d.73.1.1 39629 1fxd 58 5.76e+01 1fxd d.58.1.4 38941 1t77A 414 5.88e+01 1k2eA 156 5.92e+01 d.113.1.1 72010 1vfrA 218 5.95e+01 1vfrA d.90.1.1 40247 2fojA 155 5.95e+01 1m12A 84 6.03e+01 a.64.1.1 84745 1d3gA 367 6.09e+01 1d3gA c.1.4.1 28600 1njrA 284 6.19e+01 c.50.1.2 103858 1ub3A 220 6.31e+01 c.1.10.1 88395 1kjvB 100 6.37e+01 b.1.1.2 77423 1muwA 386 6.37e+01 c.1.15.3 79495 1t4nA 94 6.38e+01 d.50.1.1 106424 4eugA 229 6.40e+01 3eugA c.18.1.1 31019 1vkcA 158 6.40e+01 1xhdA 173 6.45e+01 1zejA 293 6.47e+01 1mucA 373 6.50e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1s3cA 141 6.65e+01 7a3hA 303 6.67e+01 7a3hA c.1.8.3 28817 1vjzA 341 6.78e+01 c.1.8.3 100838 1dusA 194 6.83e+01 1dusA c.66.1.4 34182 1sbzA 197 6.83e+01 1gefA 123 6.86e+01 1gefA c.52.1.18 60465 1yz4A 160 6.86e+01 1u8zA 168 6.91e+01 1id1A 153 6.91e+01 1id1A c.2.1.9 62286 1xhcA 367 6.93e+01 1xm7A 195 6.95e+01 1jjtA 228 6.95e+01 1a7tA d.157.1.1 63139 1v30A 124 6.97e+01 1z85A 234 6.98e+01 2bx6A 350 7.09e+01 1vjhA 122 7.10e+01 d.129.3.1 100811 1q3iA 214 7.12e+01 d.220.1.1 104524 1k1aA 241 7.17e+01 d.211.1.1 67992 3thiA 371 7.17e+01 2thiA c.94.1.1 35792 2cwlA 302 7.25e+01 1aa6 715 7.27e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1wrmA 165 7.27e+01 2beiA 170 7.29e+01 2fafA 608 7.30e+01 2cvbA 188 7.31e+01 1yvhA 329 7.33e+01 1wt4A 73 7.33e+01 1eljA 381 7.36e+01 4mbp c.94.1.1 35791 8abp 306 7.38e+01 8abp c.93.1.1 35647 1gtkA 313 7.39e+01 c.94.1.1,d.50.2.1 76346,76347 1nw3A 416 7.39e+01 c.66.1.31 86288 2b1xA 470 7.45e+01 2agyA 361 7.45e+01 1lucA 355 7.47e+01 1lucA c.1.16.1 29547 1v7wA 807 7.50e+01 a.102.1.4,b.30.5.3 108411,108412 2fvgA 340 7.54e+01 1nu5A 370 7.56e+01 c.1.11.2,d.54.1.1 92183,92184 2g76A 335 7.69e+01 1ockA 412 7.70e+01 c.117.1.1 86802 2amdA 311 7.74e+01 1nnvA 110 7.75e+01 d.17.7.1 92012 1sc3A 178 7.81e+01 c.17.1.1 105416 1pch 88 7.83e+01 1ptf d.94.1.1 40564 1yy6A 155 7.90e+01 1whuA 104 7.93e+01 1ur6B 52 7.93e+01 g.44.1.1 99812 1gnkA 112 8.03e+01 2pii d.58.5.1 39073 1x42A 232 8.03e+01 2cunA 410 8.10e+01 1f74A 293 8.11e+01 1nal3 c.1.10.1 29079 1ckeA 227 8.12e+01 1ckeA c.37.1.1 31846 1xtoA 311 8.13e+01 1d3vA 323 8.23e+01 1d3vA c.42.1.1 32559 2hmzA 113 8.25e+01 2mhr a.24.4.1 16564 2a9gA 418 8.33e+01 1t7rA 269 8.35e+01 a.123.1.1 106635 2aq6A 147 8.39e+01 2g3bA 208 8.40e+01 1ghhA 81 8.41e+01 1ghhA d.57.1.1 38940 1jyeA 349 8.43e+01 c.93.1.1 67455 1k4mA 213 8.44e+01 c.26.1.3 77258 1j1tA 233 8.48e+01 b.29.1.18 90771 2d0sA 79 8.59e+01 1vmhA 144 8.65e+01 1n62B 809 8.67e+01 d.41.1.1,d.133.1.1 80092,80093 1shuX 182 8.68e+01 c.62.1.1 98882 1uz3A 102 8.73e+01 1zcjA 463 8.76e+01 1vr7A 142 8.76e+01 1vkmA 297 8.91e+01 c.138.1.1 108670 2gp4A 628 8.96e+01