# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d4pA 141 1.07e+00 1vjeA 166 1.11e+00 d.185.1.2 100807 1zbfA 142 1.24e+00 2fg1A 158 2.25e+00 1oj4A 283 2.44e+00 d.14.1.5,d.58.26.5 93083,93084 1a8s 273 3.14e+00 1brt c.69.1.12 34710 1z4rA 168 3.40e+00 2bh1X 96 3.79e+00 1gw5S 142 4.52e+00 d.110.4.2 70633 1t6aA 126 5.08e+00 d.129.8.1 106555 1zo0A 126 6.03e+00 1zejA 293 6.17e+00 1rxyA 253 6.17e+00 c.56.2.1 98065 2a2nA 176 6.30e+00 1i12A 160 7.54e+00 1i21A d.108.1.1 61515 1akz 223 7.60e+00 3eugA c.18.1.1 31007 1xm7A 195 7.70e+00 2gd9A 189 8.25e+00 2fg9A 178 9.50e+00 1p4cA 380 9.93e+00 c.1.4.1 94100 1zvdA 380 1.01e+01 1rf6A 427 1.02e+01 d.68.2.2 97366 1wu7A 434 1.08e+01 1vj1A 363 1.09e+01 b.35.1.2,c.2.1.1 100794,100795 1n6zA 105 1.11e+01 d.263.1.1 85369 1ct5A 256 1.15e+01 1ct5A c.1.6.2 28663 1g3p 217 1.17e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 1vc1A 110 1.23e+01 c.13.2.1 108493 1yt3A 375 1.29e+01 1wnaA 131 1.29e+01 1ec7A 446 1.31e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2bogX 286 1.35e+01 1jysA 242 1.40e+01 c.56.2.1 77216 1xtoA 311 1.41e+01 1nnvA 110 1.42e+01 d.17.7.1 92012 1v6tA 255 1.44e+01 2ptd 298 1.47e+01 2plc c.1.18.2 29605 2plc 274 1.50e+01 2plc c.1.18.2 29614 1g2rA 100 1.50e+01 1g2rA d.192.1.1 60231 1t95A 240 1.59e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2a1hA 365 1.63e+01 1d1gA 168 1.69e+01 1d1gA c.71.1.1 34889 2g3aA 152 1.78e+01 2bsxA 253 1.79e+01 1nv8A 284 1.82e+01 c.66.1.30 86224 1uh5A 329 1.84e+01 c.2.1.2 107840 1wy1A 172 1.87e+01 1lssA 140 1.87e+01 c.2.1.9 74246 1q67A 231 1.88e+01 b.55.1.7 95960 1ixcA 294 1.93e+01 a.4.5.37,c.94.1.1 83764,83765 1xt8A 292 1.97e+01 2beiA 170 1.97e+01 1vk8A 106 1.98e+01 d.58.48.1 108636 1kblA 873 1.99e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1hi9A 274 1.99e+01 1hi9A c.99.1.1 61063 1yqdA 366 2.00e+01 1o0xA 262 2.13e+01 d.127.1.1 80755 1oaoC 729 2.14e+01 e.26.1.3 86746 2a1iA 146 2.21e+01 1earA 147 2.26e+01 b.107.1.1,d.58.38.1 64875,64876 1y1nA 291 2.34e+01 2bswA 146 2.36e+01 1sjdA 368 2.36e+01 c.1.11.2,d.54.1.1 105632,105633 1kdj 102 2.36e+01 1plc b.6.1.1 22864 1ryaA 160 2.37e+01 d.113.1.5 105122 1jykA 254 2.43e+01 c.68.1.13 67458 2fz4A 237 2.52e+01 1ik9A 213 2.53e+01 b.59.1.1,h.1.11.1 66176,66177 1h75A 81 2.65e+01 1h75A c.47.1.1 60716 1jf8A 131 2.67e+01 c.44.1.1 66621 1q8iA 783 2.71e+01 c.55.3.5,e.8.1.1 96208,96209 1vhsA 175 2.76e+01 d.108.1.1 100698 1c4oA 664 2.86e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1ktgA 138 2.87e+01 d.113.1.1 72972 1yb2A 275 2.88e+01 1ppjB 439 2.89e+01 d.185.1.1,d.185.1.1 104254,104255 1m2xA 223 2.91e+01 d.157.1.1 84764 1ypfA 336 2.92e+01 1lfdA 87 2.96e+01 1lfdA d.15.1.5 37622 1v37A 177 3.05e+01 1ukfA 188 3.08e+01 d.3.1.10 99488 1k8kB 394 3.18e+01 c.55.1.1 68307 1cliA 345 3.25e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1wdnA 226 3.29e+01 1lst c.94.1.1 35816 1a0p 290 3.31e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1tt7A 330 3.34e+01 1ki9A 192 3.35e+01 c.37.1.1 84404 2fymA 431 3.43e+01 1wsrA 375 3.46e+01 1v8bA 479 3.56e+01 1jc4A 148 3.71e+01 1jc4A d.32.1.4 62863 1xccA 220 3.75e+01 1prxA 224 3.76e+01 1prxA c.47.1.10 33076 1yrtA 364 3.79e+01 1w6vA 141 3.81e+01 1wyzA 242 3.84e+01 2booA 247 3.91e+01 1mjuH 227 3.97e+01 b.1.1.1,b.1.1.2 91302,91303 1pjcA 361 4.02e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1sviA 195 4.06e+01 c.37.1.8 106048 1xkpC 143 4.07e+01 1lwdA 413 4.09e+01 c.77.1.1 78265 1zzoA 136 4.15e+01 1vefA 395 4.15e+01 1h3qA 140 4.15e+01 d.110.4.3 76652 1xewX 182 4.15e+01 1th0A 226 4.19e+01 d.3.1.7 106903 1qlmA 316 4.35e+01 1qlmA d.147.1.1 41765 1sl4A 155 4.44e+01 d.169.1.1 105710 1a53 247 4.44e+01 1a53 c.1.2.4 28564 1e8gA 560 4.52e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1ne9A 335 4.56e+01 d.108.1.4,d.108.1.4 91839,91840 1j6wA 175 4.61e+01 1j98A d.185.1.2 62663 1t71A 281 4.63e+01 1ygmA 118 4.70e+01 1p3dA 475 4.75e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2bhuA 602 4.76e+01 1xo7A 166 4.78e+01 1yz4A 160 4.86e+01 1qmvA 197 4.87e+01 1qq2A c.47.1.10 33066 1v4pA 157 4.89e+01 1h2bA 359 4.92e+01 b.35.1.2,c.2.1.1 90543,90544 2aeuA 374 4.95e+01 1hr6A 475 5.02e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1yqhA 109 5.07e+01 1pz7A 204 5.08e+01 b.29.1.4 95405 1dj0A 264 5.15e+01 1dj0A d.265.1.1 90337 1d3gA 367 5.25e+01 1d3gA c.1.4.1 28600 2dddA 225 5.25e+01 1fpzA 212 5.28e+01 1fpzA c.45.1.1 59976 1xc3A 302 5.29e+01 1pvvA 315 5.29e+01 c.78.1.1,c.78.1.1 95190,95191 1txdA 385 5.34e+01 a.87.1.1,b.55.1.1 107422,107423 1tp9A 162 5.37e+01 1on0A 158 5.65e+01 d.108.1.1 87095 1e8cA 498 5.66e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1kqpA 271 5.82e+01 c.26.2.1 72883 2d2eA 250 5.84e+01 1knqA 175 5.85e+01 c.37.1.17 72786 1zosA 230 5.90e+01 1d1qA 161 5.95e+01 1dg9A c.44.1.1 32642 2hvm 273 5.97e+01 1cnv c.1.8.5 28985 1l8aA 886 5.97e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1z85A 234 5.98e+01 1rz3A 201 6.01e+01 c.37.1.6 98132 1uekA 275 6.08e+01 d.14.1.5,d.58.26.5 88483,88484 1mspA 126 6.17e+01 1mspA b.1.11.2 22333 1kamA 194 6.18e+01 c.26.1.3 72254 1vk9A 151 6.19e+01 c.139.1.1 108640 1zbqA 327 6.25e+01 2b0jA 358 6.40e+01 1ytvA 366 6.43e+01 2bl9A 238 6.50e+01 1r8sA 164 6.52e+01 c.37.1.8 97247 1k8kD 300 6.55e+01 d.198.2.1,d.198.2.1 68309,68310 1yymG 313 6.55e+01 1hw7A 255 6.56e+01 1i7fA d.193.1.1 61297 1t4oA 117 6.57e+01 d.50.1.1 106425 1hruA 188 6.59e+01 1hruA d.115.1.1 40926 1pjhA 280 6.60e+01 c.14.1.3 94761 1f8fA 371 6.69e+01 b.35.1.2,c.2.1.1 83246,83247 1xkrA 206 6.73e+01 1aa7A 158 6.79e+01 1aa7A a.95.1.1 18741 1ouoA 210 6.85e+01 d.4.1.6 93554 1up7A 417 6.86e+01 1ylqA 96 6.86e+01 1ny1A 240 6.90e+01 c.6.2.3 86395 2bsyA 278 6.92e+01 1yrkA 126 6.94e+01 1xl7A 612 6.98e+01 1wekA 217 7.01e+01 1rurH 218 7.04e+01 b.1.1.1,b.1.1.2 97879,97880 1x8gA 227 7.16e+01 1ns5A 155 7.21e+01 c.116.1.3 80705 1srqA 341 7.22e+01 e.55.1.1 105967 1v2dA 381 7.24e+01 c.67.1.1 108281 2g1uA 155 7.27e+01 1x8hA 228 7.28e+01 2d1pB 119 7.32e+01 2ftxA 90 7.46e+01 1khyA 148 7.50e+01 a.174.1.1 77410 2d9rA 104 7.57e+01 1zu4A 320 7.58e+01 1t4nA 94 7.60e+01 d.50.1.1 106424 1wstA 417 7.61e+01 1g5tA 196 7.67e+01 1g5rA c.37.1.11 32366 1yw5A 177 7.68e+01 1j98A 157 7.73e+01 1j98A d.185.1.2 62755 1yw3A 208 7.77e+01 1y1pA 342 7.84e+01 2g5cA 281 7.94e+01 1hyvA 166 8.01e+01 1b9dA c.55.3.2 61424 1qysA 106 8.06e+01 k.41.1.1 96603 2aefA 234 8.08e+01 1u9iA 519 8.08e+01 1gmyA 261 8.08e+01 d.3.1.1 76236 1qd9A 124 8.13e+01 1qu9A d.79.1.1 39758 1f74A 293 8.14e+01 1nal3 c.1.10.1 29079 2exrA 524 8.18e+01 1i4wA 353 8.22e+01 c.66.1.24 66028 1whmA 92 8.24e+01 1nzjA 298 8.33e+01 c.26.1.1 92377 1ztcA 221 8.38e+01 1othA 321 8.46e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1u60A 310 8.51e+01 e.3.1.2 107692 2pspA 106 8.52e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1nn5A 215 8.54e+01 c.37.1.1 85892 1khtA 192 8.56e+01 c.37.1.1 84401 1u04A 771 8.57e+01 b.34.14.1,c.55.3.10 107539,107540 1s62A 106 8.70e+01 1je0A 236 8.70e+01 c.56.2.1 66581 1chd 203 8.76e+01 1chd c.40.1.1 32478 1w9aA 147 8.77e+01 1s12A 94 8.77e+01 1tfr 305 8.82e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2fi9A 128 8.84e+01 3eipA 84 8.87e+01 3eipA d.26.2.1 38434 1wduA 245 8.93e+01 d.151.1.1 109286 1sx5A 244 8.94e+01 c.52.1.2 99023