# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d4pA 141 4.26e-02 1rxyA 253 2.48e-01 c.56.2.1 98065 1z4rA 168 3.53e-01 1zbfA 142 4.46e-01 1zejA 293 5.03e-01 1vjeA 166 6.49e-01 d.185.1.2 100807 1pjcA 361 1.03e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 2bh1X 96 1.10e+00 1jysA 242 1.20e+00 c.56.2.1 77216 1oj4A 283 1.25e+00 d.14.1.5,d.58.26.5 93083,93084 2bsxA 253 1.71e+00 2a1hA 365 1.78e+00 1xm7A 195 1.92e+00 1a8s 273 2.30e+00 1brt c.69.1.12 34710 1i12A 160 2.32e+00 1i21A d.108.1.1 61515 1gw5S 142 2.44e+00 d.110.4.2 70633 2g3aA 152 2.96e+00 1vhsA 175 3.02e+00 d.108.1.1 100698 2bswA 146 3.15e+00 1je0A 236 3.19e+00 c.56.2.1 66581 1hi9A 274 3.34e+00 1hi9A c.99.1.1 61063 1vc1A 110 3.40e+00 c.13.2.1 108493 2fg1A 158 3.48e+00 1lssA 140 3.56e+00 c.2.1.9 74246 1yt3A 375 3.58e+00 1wsrA 375 3.72e+00 1qlmA 316 3.91e+00 1qlmA d.147.1.1 41765 1d1gA 168 4.02e+00 1d1gA c.71.1.1 34889 1rf6A 427 4.11e+00 d.68.2.2 97366 1zo0A 126 4.77e+00 2bogX 286 5.46e+00 1jf8A 131 5.75e+00 c.44.1.1 66621 1yb2A 275 5.91e+00 1ec7A 446 6.01e+00 1bqg c.1.11.2,d.54.1.1 29218,38862 1ct5A 256 6.28e+00 1ct5A c.1.6.2 28663 1wu7A 434 6.32e+00 2a2nA 176 6.63e+00 2gd9A 189 6.82e+00 2g5cA 281 6.92e+00 1t95A 240 7.30e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1n6zA 105 7.36e+00 d.263.1.1 85369 1kblA 873 7.46e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1ixcA 294 7.54e+00 a.4.5.37,c.94.1.1 83764,83765 1yqdA 366 7.89e+00 1g2rA 100 7.91e+00 1g2rA d.192.1.1 60231 1zu4A 320 8.20e+00 2beiA 170 8.35e+00 1h3qA 140 8.36e+00 d.110.4.3 76652 1ne9A 335 8.96e+00 d.108.1.4,d.108.1.4 91839,91840 1yrtA 364 9.07e+00 2plc 274 9.12e+00 2plc c.1.18.2 29614 1vk8A 106 9.16e+00 d.58.48.1 108636 1wyzA 242 9.31e+00 1uh5A 329 9.33e+00 c.2.1.2 107840 1earA 147 9.59e+00 b.107.1.1,d.58.38.1 64875,64876 1a53 247 9.60e+00 1a53 c.1.2.4 28564 1xtoA 311 9.78e+00 1ylqA 96 9.86e+00 1q67A 231 9.92e+00 b.55.1.7 95960 1t6aA 126 1.00e+01 d.129.8.1 106555 2ptd 298 1.02e+01 2plc c.1.18.2 29605 1zosA 230 1.05e+01 1ypfA 336 1.07e+01 1nnvA 110 1.07e+01 d.17.7.1 92012 1knqA 175 1.10e+01 c.37.1.17 72786 1vqtA 213 1.12e+01 1z85A 234 1.12e+01 1m2xA 223 1.15e+01 d.157.1.1 84764 2a1iA 146 1.20e+01 1kamA 194 1.22e+01 c.26.1.3 72254 1p4cA 380 1.22e+01 c.1.4.1 94100 1vj1A 363 1.25e+01 b.35.1.2,c.2.1.1 100794,100795 2fg9A 178 1.30e+01 1ik9A 213 1.30e+01 b.59.1.1,h.1.11.1 66176,66177 1cnv 299 1.37e+01 1cnv c.1.8.5 28989 1y1pA 342 1.38e+01 1szoA 257 1.40e+01 c.14.1.3 106164 1yz4A 160 1.42e+01 1id1A 153 1.43e+01 1id1A c.2.1.9 62286 1hxhA 253 1.46e+01 c.2.1.2 76725 1xc3A 302 1.46e+01 1usyA 275 1.55e+01 1p3dA 475 1.55e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1kyhA 276 1.57e+01 c.72.1.4 73222 1oaoC 729 1.58e+01 e.26.1.3 86746 1e8gA 560 1.58e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1wnaA 131 1.60e+01 1zvdA 380 1.66e+01 1ktgA 138 1.70e+01 d.113.1.1 72972 1dj0A 264 1.74e+01 1dj0A d.265.1.1 90337 1f74A 293 1.75e+01 1nal3 c.1.10.1 29079 1on0A 158 1.76e+01 d.108.1.1 87095 1vpqA 273 1.79e+01 1g3p 217 1.79e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 1wekA 217 1.79e+01 1yw3A 208 1.86e+01 1sviA 195 1.86e+01 c.37.1.8 106048 1qstA 160 1.93e+01 1yghA d.108.1.1 40804 1jetA 517 1.93e+01 1jevA c.94.1.1 35718 2fz4A 237 1.94e+01 1lwdA 413 1.94e+01 c.77.1.1 78265 1lfdA 87 1.95e+01 1lfdA d.15.1.5 37622 1xo7A 166 1.99e+01 1v6tA 255 2.02e+01 1ojrA 274 2.02e+01 c.74.1.1 93147 1pz7A 204 2.03e+01 b.29.1.4 95405 1pjhA 280 2.05e+01 c.14.1.3 94761 1e8cA 498 2.06e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1ki9A 192 2.11e+01 c.37.1.1 84404 1vk9A 151 2.11e+01 c.139.1.1 108640 1xkpC 143 2.16e+01 2gx9A 129 2.21e+01 1v9sA 208 2.23e+01 1jykA 254 2.26e+01 c.68.1.13 67458 2aefA 234 2.29e+01 1j8mF 297 2.32e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1uekA 275 2.35e+01 d.14.1.5,d.58.26.5 88483,88484 1s12A 94 2.37e+01 1v4pA 157 2.38e+01 1srqA 341 2.38e+01 e.55.1.1 105967 1hyvA 166 2.39e+01 1b9dA c.55.3.2 61424 1c4oA 664 2.40e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1nv8A 284 2.44e+01 c.66.1.30 86224 1y5eA 169 2.49e+01 2bfwA 200 2.53e+01 2a1vA 144 2.54e+01 2bl9A 238 2.60e+01 1wy1A 172 2.68e+01 1owlA 484 2.74e+01 a.99.1.1,c.28.1.1 93647,93648 1fpzA 212 2.75e+01 1fpzA c.45.1.1 59976 2bhuA 602 2.75e+01 1v37A 177 2.83e+01 1x8hA 228 2.88e+01 1xt8A 292 2.88e+01 1x8gA 227 2.89e+01 1vk1A 242 2.94e+01 d.268.1.2 108634 2c6qA 351 2.95e+01 1h2bA 359 3.00e+01 b.35.1.2,c.2.1.1 90543,90544 1l8aA 886 3.05e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1hrhA 136 3.06e+01 1rthA c.55.3.1 33577 2cxcA 144 3.06e+01 1u04A 771 3.07e+01 b.34.14.1,c.55.3.10 107539,107540 1khtA 192 3.07e+01 c.37.1.1 84401 1d3gA 367 3.09e+01 1d3gA c.1.4.1 28600 1bd3A 243 3.13e+01 1bd3A c.61.1.1 34098 1tp9A 162 3.16e+01 1kqpA 271 3.21e+01 c.26.2.1 72883 1k8kD 300 3.21e+01 d.198.2.1,d.198.2.1 68309,68310 1kdj 102 3.27e+01 1plc b.6.1.1 22864 1m6yA 301 3.28e+01 a.60.13.1,c.66.1.23 78716,78717 1yqhA 109 3.30e+01 1cliA 345 3.30e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1vybA 238 3.32e+01 d.151.1.1 108897 2b4lA 268 3.32e+01 1u9iA 519 3.33e+01 1e0tA 470 3.36e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2fymA 431 3.38e+01 1v8bA 479 3.48e+01 1akz 223 3.56e+01 3eugA c.18.1.1 31007 2aeuA 374 3.56e+01 1xl7A 612 3.60e+01 1hr6A 475 3.62e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1yrkA 126 3.63e+01 1k8kA 418 3.64e+01 c.55.1.1,c.55.1.1 68305,68306 1umkA 275 3.66e+01 1yymG 313 3.67e+01 1tqzA 133 3.68e+01 1fehA 574 3.70e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1hruA 188 3.70e+01 1hruA d.115.1.1 40926 2cvlA 124 3.73e+01 7a3hA 303 3.75e+01 7a3hA c.1.8.3 28817 1xfjA 261 3.77e+01 d.194.1.2 109585 1mk4A 157 3.81e+01 d.108.1.1 84979 1acf 125 3.82e+01 3nul d.110.1.1 40882 1fg7A 356 3.83e+01 1gewA c.67.1.1 59819 1chuA 540 3.83e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1wdnA 226 3.84e+01 1lst c.94.1.1 35816 1j6wA 175 3.85e+01 1j98A d.185.1.2 62663 8abp 306 3.86e+01 8abp c.93.1.1 35647 1rreA 200 3.87e+01 d.14.1.10 97791 1khiA 176 3.90e+01 b.34.5.2,b.40.4.5 77408,77409 1ny1A 240 3.91e+01 c.6.2.3 86395 5rubA 490 3.93e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1wstA 417 3.93e+01 1914 232 3.94e+01 1914 d.49.1.1,d.49.1.1 83028,83029 2bgkA 278 3.95e+01 3nul 130 3.96e+01 3nul d.110.1.1 40891 1g5tA 196 3.96e+01 1g5rA c.37.1.11 32366 1vp8A 201 4.01e+01 1w6vA 141 4.06e+01 1va4A 279 4.07e+01 c.69.1.12 108458 2gptA 523 4.08e+01 1iibA 106 4.12e+01 1iibA c.44.2.1 32648 1jjtA 228 4.16e+01 1a7tA d.157.1.1 63139 1tvnA 293 4.18e+01 1khyA 148 4.19e+01 a.174.1.1 77410 1k8rB 110 4.21e+01 d.15.1.5 72180 2ftxA 90 4.21e+01 1j98A 157 4.24e+01 1j98A d.185.1.2 62755 1mw7A 240 4.25e+01 e.39.1.1 79557 1zzoA 136 4.26e+01 1ydyA 356 4.26e+01 1wd5A 208 4.34e+01 1ns5A 155 4.35e+01 c.116.1.3 80705 1o0yA 260 4.41e+01 c.1.10.1 80756 2ffcA 353 4.43e+01 2awpA 198 4.43e+01 1u6tA 121 4.47e+01 2freA 200 4.48e+01 1nox 205 4.50e+01 1nox d.90.1.1 40242 1sx5A 244 4.55e+01 c.52.1.2 99023 1prxA 224 4.57e+01 1prxA c.47.1.10 33076 2g0qA 173 4.57e+01 1qmvA 197 4.59e+01 1qq2A c.47.1.10 33066 1zczA 464 4.69e+01 2dg5A 366 4.71e+01 1zbqA 327 4.81e+01 1k8kB 394 4.82e+01 c.55.1.1 68307 1rz3A 201 4.84e+01 c.37.1.6 98132 1pvgA 418 4.84e+01 d.14.1.3,d.122.1.2 95161,95162 1jd1A 129 4.87e+01 1qu9A d.79.1.1 62890 1o20A 427 4.87e+01 c.82.1.1 86556 1ukfA 188 4.88e+01 d.3.1.10 99488 1uufA 369 4.89e+01 b.35.1.2,c.2.1.1 100006,100007 1hjrA 158 4.96e+01 1hjrA c.55.3.6 33727 1sl4A 155 4.96e+01 d.169.1.1 105710 1t4oA 117 4.98e+01 d.50.1.1 106425 1wosA 364 5.06e+01 b.44.2.1,d.250.1.1 109468,109469 1s62A 106 5.06e+01 2ganA 190 5.12e+01 1tt7A 330 5.15e+01 2hvm 273 5.15e+01 1cnv c.1.8.5 28985 1tiqA 180 5.18e+01 d.108.1.1 107010 2d2eA 250 5.19e+01 2fl4A 149 5.19e+01 1yqtA 538 5.19e+01 2exrA 524 5.21e+01 1q6zA 528 5.23e+01 1vefA 395 5.25e+01 1ppjB 439 5.28e+01 d.185.1.1,d.185.1.1 104254,104255 1t71A 281 5.28e+01 1jl3A 139 5.30e+01 c.44.1.1 66826 2akaB 299 5.32e+01 1aa7A 158 5.34e+01 1aa7A a.95.1.1 18741 1yvoA 172 5.44e+01 1huxA 270 5.47e+01 1huxA c.55.1.5 61278 1pvvA 315 5.48e+01 c.78.1.1,c.78.1.1 95190,95191 1v2dA 381 5.48e+01 c.67.1.1 108281 1y9wA 140 5.49e+01 2sak 121 5.61e+01 2sak d.15.5.1 37711 1hw7A 255 5.63e+01 1i7fA d.193.1.1 61297 1wy7A 207 5.65e+01 1x7dA 350 5.65e+01 1qahA 136 5.69e+01 d.79.1.1 96338 1v3vA 333 5.69e+01 b.35.1.2,c.2.1.1 108345,108346 1wmhA 89 5.72e+01 1y1nA 291 5.73e+01 1jc4A 148 5.74e+01 1jc4A d.32.1.4 62863 1nn5A 215 5.80e+01 c.37.1.1 85892 5nul 138 5.85e+01 5nul c.23.5.1 31191 1h75A 81 5.88e+01 1h75A c.47.1.1 60716 1ypyA 184 5.90e+01 1x9zA 188 5.96e+01 1xewX 182 5.98e+01 1txdA 385 6.00e+01 a.87.1.1,b.55.1.1 107422,107423 1g4wR 383 6.00e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1o0xA 262 6.00e+01 d.127.1.1 80755 1d1qA 161 6.02e+01 1dg9A c.44.1.1 32642 1t9hA 307 6.12e+01 1l6rA 227 6.12e+01 c.108.1.10 77768 1xzpB 150 6.17e+01 1ryaA 160 6.19e+01 d.113.1.5 105122 2dbyA 368 6.19e+01 2bsyA 278 6.20e+01 2cx1A 187 6.39e+01 2f1kA 279 6.40e+01 1xjjA 644 6.43e+01 1nu5A 370 6.52e+01 c.1.11.2,d.54.1.1 92183,92184 1uq5A 263 6.53e+01 d.165.1.1 99778 1kkoA 413 6.54e+01 c.1.11.2,d.54.1.1 68675,68676 1i4wA 353 6.55e+01 c.66.1.24 66028 1tf1A 198 6.56e+01 d.110.2.2 106826 1y80A 210 6.58e+01 1yw5A 177 6.61e+01 2bh7A 261 6.65e+01 1nytA 271 6.68e+01 c.2.1.7,c.58.1.5 86417,86418 1yw4A 341 6.72e+01 2beqD 48 6.73e+01 1ru3A 732 6.73e+01 e.26.1.3 97835 1nh2B 53 6.76e+01 a.32.1.1 91874 1vl2A 421 6.76e+01 c.26.2.1,d.210.1.1 108708,108709 1pii 452 6.77e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1b5pA 385 6.82e+01 c.67.1.1 90403 2f46A 156 6.85e+01 1odkA 235 7.09e+01 c.56.2.1 86863 1th0A 226 7.15e+01 d.3.1.7 106903 1kwmA 402 7.21e+01 c.56.5.1,d.58.3.1 73079,73080 1wduA 245 7.22e+01 d.151.1.1 109286 1nd6A 354 7.30e+01 c.60.1.2 80407 1l8nA 679 7.45e+01 c.1.8.10,d.92.2.2 84564,84565 1r6wA 322 7.45e+01 c.1.11.2,d.54.1.1 97165,97166 1ro0A 216 7.52e+01 d.264.1.2 97664 1vd6A 224 7.53e+01 1zccA 248 7.56e+01 1dz3A 130 7.63e+01 1dz3A c.23.1.1 31105 1ed8A 449 7.66e+01 1b8jA c.76.1.1 34988 1gmxA 108 7.67e+01 c.46.1.3 65355 2d1yA 256 7.72e+01 1qysA 106 7.73e+01 k.41.1.1 96603 1ohlA 342 7.74e+01 c.1.10.3 87035 1bn7A 294 7.78e+01 1bn6A c.69.1.8 34677 1h72C 296 7.79e+01 d.14.1.5,d.58.26.1 60712,60713 1wcv1 257 7.80e+01 2a61A 145 7.82e+01 1zxxA 319 7.83e+01 1y7rA 133 7.84e+01 1q2yA 140 7.88e+01 d.108.1.1 95655 1onrA 316 7.88e+01 1onrA c.1.10.1 29169 1wrmA 165 7.91e+01 1vp2A 208 7.99e+01 1t0qC 86 8.03e+01 d.15.12.1 106222 1x54A 434 8.04e+01 1up7A 417 8.05e+01 1wdpA 495 8.19e+01 1zuwA 272 8.24e+01 1z82A 335 8.24e+01 1iy8A 267 8.24e+01 c.2.1.2 83774 1iujA 106 8.25e+01 d.58.4.5 90701 1shuX 182 8.34e+01 c.62.1.1 98882 1u60A 310 8.37e+01 e.3.1.2 107692 1othA 321 8.39e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1xccA 220 8.40e+01 2gdqA 382 8.42e+01 2an3A 289 8.49e+01 1n7oA 721 8.57e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1es5A 262 8.61e+01 1skf e.3.1.1 42679 1va6A 518 8.71e+01 1yixA 265 8.73e+01 2fpmA 322 8.73e+01 1yliA 153 8.75e+01 1wz3A 96 8.80e+01 1twyA 290 8.80e+01 1f8fA 371 8.81e+01 b.35.1.2,c.2.1.1 83246,83247 1q8iA 783 8.81e+01 c.55.3.5,e.8.1.1 96208,96209 2blfB 81 8.83e+01 1ub3A 220 8.88e+01 c.1.10.1 88395 1vfrA 218 8.92e+01 1vfrA d.90.1.1 40247 1ckmA 330 8.93e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1w9aA 147 8.99e+01