# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1umkA 275 6.40e-01 1qx4A 274 1.35e+00 b.43.4.2,c.25.1.1 104624,104625 1xt8A 292 1.86e+00 1z4rA 168 2.08e+00 2bswA 146 2.12e+00 1bykA 255 2.34e+00 1bykA c.93.1.1 35706 2fg9A 178 2.39e+00 1wekA 217 2.46e+00 1q77A 138 3.31e+00 c.26.2.4 96023 1oc2A 348 3.73e+00 c.2.1.2 92765 1ct5A 256 4.27e+00 1ct5A c.1.6.2 28663 1nv8A 284 4.34e+00 c.66.1.30 86224 1qstA 160 6.08e+00 1yghA d.108.1.1 40804 1vhsA 175 6.44e+00 d.108.1.1 100698 1lssA 140 6.59e+00 c.2.1.9 74246 1jykA 254 6.75e+00 c.68.1.13 67458 1wr2A 238 9.49e+00 1vc1A 110 9.97e+00 c.13.2.1 108493 2d4pA 141 1.01e+01 1wjgA 137 1.07e+01 1xypA 190 1.11e+01 1axkA b.29.1.11 24327 1tiqA 180 1.24e+01 d.108.1.1 107010 1kzfA 230 1.33e+01 d.108.1.3 73354 1e8gA 560 1.33e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1yvoA 172 1.34e+01 1vk1A 242 1.34e+01 d.268.1.2 108634 1khyA 148 1.37e+01 a.174.1.1 77410 1e5kA 201 1.52e+01 1fr9A c.68.1.8 34578 1ki9A 192 1.56e+01 c.37.1.1 84404 1rz3A 201 1.62e+01 c.37.1.6 98132 1aqcA 172 1.63e+01 1x11A b.55.1.2 26983 1zbfA 142 1.76e+01 1gtkA 313 2.05e+01 c.94.1.1,d.50.2.1 76346,76347 1swxA 209 2.05e+01 a.224.1.1 106075 2fafA 608 2.32e+01 1sjiA 350 2.43e+01 1jmvA 141 2.48e+01 c.26.2.4 66897 1h1dA 221 2.50e+01 c.66.1.1 83452 2cq8A 110 2.61e+01 1odkA 235 2.63e+01 c.56.2.1 86863 1ny1A 240 2.64e+01 c.6.2.3 86395 1lk9A 448 2.74e+01 c.67.1.1 78057 1q2yA 140 2.76e+01 d.108.1.1 95655 1ktgA 138 3.07e+01 d.113.1.1 72972 1vefA 395 3.13e+01 1ycoA 279 3.21e+01 1yb2A 275 3.35e+01 2oatA 439 3.36e+01 2dkb c.67.1.4 34452 1t6gC 184 3.60e+01 b.29.1.11 106569 1khtA 192 3.62e+01 c.37.1.1 84401 1y0yA 353 3.63e+01 1wbeA 209 3.66e+01 2biiA 424 3.69e+01 3thiA 371 3.69e+01 2thiA c.94.1.1 35792 1ek0A 170 3.85e+01 1ctqA c.37.1.8 32076 1wcgA 464 3.89e+01 2gk9A 426 3.95e+01 2aq5A 402 4.09e+01 1rwhA 757 4.31e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2beiA 170 4.43e+01 1xnkA 196 4.49e+01 1chuA 540 4.54e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2cxxA 190 4.56e+01 1yna 194 4.62e+01 1axkA b.29.1.11 24335 2g0qA 173 4.62e+01 1zczA 464 4.71e+01 1vp2A 208 4.75e+01 1wsrA 375 4.78e+01 1u8zA 168 4.83e+01 1wehA 171 4.96e+01 1ukfA 188 4.98e+01 d.3.1.10 99488 1ixh 321 5.53e+01 1ixh c.94.1.1 35761 1p99A 295 5.57e+01 c.94.1.1 94384 1m2xA 223 5.58e+01 d.157.1.1 84764 1evlA 401 5.58e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1dljA 402 5.65e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1wd5A 208 5.66e+01 2agyA 361 5.73e+01 1ezwA 349 5.73e+01 1ezwA c.1.16.3 29558 2c71A 216 5.80e+01 1ec7A 446 5.85e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2g1uA 155 5.90e+01 1i12A 160 5.91e+01 1i21A d.108.1.1 61515 1wosA 364 5.96e+01 b.44.2.1,d.250.1.1 109468,109469 1mqoA 227 5.99e+01 d.157.1.1 103846 1vkcA 158 6.19e+01 2a7yA 83 6.20e+01 1ryaA 160 6.23e+01 d.113.1.5 105122 1ceo 343 6.28e+01 1ceo c.1.8.3 28808 2bsxA 253 6.33e+01 1fs1B 141 6.42e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 2fg1A 158 6.43e+01 2d9rA 104 6.54e+01 1d1qA 161 6.54e+01 1dg9A c.44.1.1 32642 1xm7A 195 6.75e+01 1yx0A 159 6.83e+01 1on0A 158 6.97e+01 d.108.1.1 87095 1kqpA 271 6.97e+01 c.26.2.1 72883 1qczA 169 7.01e+01 1qczA c.23.8.1 31276 2plc 274 7.02e+01 2plc c.1.18.2 29614 2c31A 568 7.18e+01 1yz7A 188 7.25e+01 2bhuA 602 7.34e+01 1z08A 170 7.36e+01 1zsxA 347 7.43e+01 1jjtA 228 7.47e+01 1a7tA d.157.1.1 63139 1kkoA 413 7.49e+01 c.1.11.2,d.54.1.1 68675,68676 1pvxA 194 7.54e+01 1axkA b.29.1.11 24341 2gb7A 305 7.55e+01 1muwA 386 7.55e+01 c.1.15.3 79495 1s3cA 141 7.56e+01 1r77A 103 7.62e+01 1t0qA 498 7.70e+01 a.25.1.2 106220 2g5dA 422 7.74e+01 1o97C 264 7.85e+01 c.26.2.3 81232 1zxxA 319 7.85e+01 1xhkA 187 7.98e+01 1eziA 228 7.99e+01 1eyrA c.68.1.13 34512 1wn5A 130 8.06e+01 1dusA 194 8.20e+01 1dusA c.66.1.4 34182 1huxA 270 8.23e+01 1huxA c.55.1.5 61278 2aefA 234 8.24e+01 1ddf 127 8.27e+01 1ddf a.77.1.2 18423 2bmfA 451 8.27e+01 1lqtA 456 8.27e+01 c.3.1.1,c.4.1.1 74198,74199 2bmwA 304 8.29e+01 1yiiA 320 8.40e+01 1t7rA 269 8.45e+01 a.123.1.1 106635 1jyeA 349 8.50e+01 c.93.1.1 67455 1zcjA 463 8.62e+01 1gheA 177 8.73e+01 d.108.1.1 76222 1l3iA 192 8.75e+01 c.66.1.22 77676 2gfhA 260 8.80e+01 2etgA 296 8.80e+01 1l0qA 391 8.90e+01 b.1.3.1,b.69.2.3 77644,77645 2b1xA 470 8.93e+01