(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0372
                             10         20           30        40      
                             |          |            |         |      
   1 ...M..I....P...F...KDITLA.DRDTITAFTMKS...DRRNCDLSFSNLCSWRFLYDTQFA
   2 ...M..I....A...F...RDITIQ.DKDTITAYTMNS...CRRNCDLSFSNLCSWRFLYHTKFA
   3 ...M..I....A...F...RDITIQ.DKDTITAYTMNS...CRRNCDLSFSNLCSWRFLYHTKFA
   4 ...M..I....P...F...KDITLA.DRDTITAFTMKS...DRRNCDLSFSNLCSWRFLYDTQFA
   5 ...M..I....D...F...KKIEMR.DKEWVKPLLEAA...DLGGCHQNFTNLFSWSGTYHYQVA
   6 ...M..I....N...F...KKVELA.DKQWMGPLITLG...EMSSSHQNFTNIFAWSEIYHYRVA
   7 ...M..Lcee.D...F...KPVTLA.DREFFERHSELY...PQTHSSNTFTNMVCWNHFTQYRYA
   8 ...M..-....-...F...EKITLA.HKDLFSRFLSTQ...KIVLSDVSFTNCFLWQHARLIQVA
   9 ...M..-....-...F...EKITLA.HKDLFSRFLSAQ...KIVLSDVSFTNCFLWQHARLIQVA
  10 m..M..Lsle.D...F...KPVMLS.DRAFFESHYAFF...PQTHSSNTFTNMVCWNHFTPYRYA
  11 ...M..-....-...F...EEITLA.HKDLFSRFLQTQ...KIVLSDVSFTNCFLWQHARLIQVA
  12 ...M..-....-...F...EKLKLE.HKDLFSRFLSAQ...KIVLSDVSFTNCFLWQHARLIRVA
  13 ...Mk.Ihee.D...F...HPIELE.DKDIFDRIYRDY...PIQHSENTFGTLFCWRSYGHYKIC
  14 ...M..Lgkk.D...F...KPVTLA.DRAFFERHYALY...PQTHSDNTFTSMICWNHFMHYRYA
  15 ...M..-....Q...W...KPIDIE.DRETLEGFFRSE...ELSVSDFSFTNLYLWHFSRSISYA
  16 ...Mn.I....K...F...KPVEPA.DRSAITTITFSS...VARICDLAFSNLYCWSFVYGTSWA
  17 ...M..F....-...F...KDIELN.SKKELDPYFDLV...DYEACEYCFSTLYMWQHVYKTGYY
  18 ...M..-....E...F...KKIELE.DRTLLEPFTNQK...GRWLSDMNFSNMFMWRHSREISYT
  19 svfM..L....Q...F...SPLTLE.DKEIFDKYIKPY...KFKTSEYSFTNQYLWRKGSDVTYT
  20 ...MsaT....D...F...SPVTLDaMQDYL-ALFART...PRRASDYSFTNLWGWAEHYGLEWR
  21 ...M..L....D...F...KPIELK.DRELFHEYLKDY...DFLTYEYSFLTLYIWRKMYNTEFA
  22 ...M..-....-...W...QKLTIE.SKSSIEEYTKN-...RFEICDLSFSNLLLWSIGENTEYE
  23 ...M..-....-...W...QKLTIE.SKSSIEEYTKN-...RFEICDLSFSNLLLWSTGENTEYE
  24 ...M..-....K...F...YKIDIS.DKRIFDEYFKAF...QPEIADLTFTNLFMWDPFYDINFT
  25 ...McaV....E...F...KPLTM-.--DVMEEYLTLFsgtPSRASDYSFTNLWGWANEYGLEVG
  26 ...MseA....A...F...SPVHP-.SK--FDNYTLLWemtPQHSSDYTLTNIWGWKDFYGLEWM
  27 ...Ms.IpqypE...F...APISLD.MQSEMEFYLKRL...PDGISELTFLNLYLFRHNYKYQVT
  28 mdpM..T....DipgFpaaRPLFLA.DKPFFAAVFAEL...QPRVSELTFANLYLFREAHDYRLT
  29 ...Me.IpchpD...S...RPLALA.DKPLLDALFTEL...QPRVSELTFANLYLFRGIHDYRLT


        50              60             70              80             9
        |               |              |               |              
   1 VIDDFLVFK.F.W.A...GEQ..LAYMM.PVG..N.GD.LKAV.L...RKLIED..ADK.E..KH
   2 IINNFLVFK.F.W.A...GDE..LAYMM.PVG..E.GN.LEEV.L...NELIED..ARQ.E..GE
   3 IINNFLVFK.F.W.A...GDE..LAYMM.PVG..E.GN.LEEV.L...NELIED..ARQ.E..GE
   4 VIDDFLVFK.F.W.A...GEQ..LAYMM.PVG..N.GD.LKAV.L...RKLIED..ADK.E..KH
   5 QVEDYLVIK.G.R.L...GET..YYYFY.PAG..T.GD.VQPV.L...EAMKKD..AQE.N..GH
   6 RVSDYLVVK.G.RlQ...NGE..QYYFY.PAG..K.GD.PKSV.I...ETMKQD..AAD.C..GH
   7 YVNGNIIIS.G.T.T...GGI..TRFHP.PIG..P.RD.PE-L.M...RELIQL..AMK.V..SD
   8 VIRDCLVIQ.T.T.Y...ENQk.PFYFY.PIG..K.-R.PHEC.V...KELLK-..---.L..EK
   9 VIRDCLVIQ.T.T.Y...ENQk.PFYFY.PIG..K.NA.FE-C.V...KELLK-..---.L..EK
  10 YVNGNVIIS.C.T.T...EGV..TRFHP.PIG..P.RN.PE-L.M...RELIRL..ALD.V..SD
  11 VIRDCLVIQ.T.T.Y...ENQk.PFYFY.PIG..K.-R.PHEC.V...KELLE-..---.L..EK
  12 VIKDCLVIQ.T.T.Y...ENQq.PFYFY.PIG..K.-R.AHAC.V...KELLK-..---.L..EK
  13 EHEGCLIIK.G.E.T...ENY..HSYRF.PIG..P.VK.PD-V.F...HATIKL..AQN.L..GE
  14 YVKGNVILA.C.T.A...AGV..TRLHP.PVG..P.RD.PE-L.M...KEVIRL..ALD.M..GN
  15 IIEDLLCIKtQ.Y.H...GEH..PFLFF.PLG..K.GE.KRGV.I...ERLMEC..FES.R..AI
  16 IVEGCLIIR.F.K.P...KSRshPVYLF.PVG..-.AD.PEQV.VaaaHRLKAE..VVH.E..DY
  17 IGEDFAVLV.G.E.Y...EGD..SFSIL.PLA..K.KDkLPEV.V...DFVLEY..FSK.N..NK
  18 FLQEHLIVQ.T.R.Y...PHQn.PFVFY.PLG..A.GD.KKPI.I...ESLIQF..YKD.L..SL
  19 ILNDVLIIK.K.VdY...DGT..TQFTQ.PIGyeK.EN.LKEI.V...DELIKY..RQK.H..NM
  20 FEHGLCWLR.Q.T.L...PEV..-RYWA.PVG..PwGD.IDWAsC...TCLGKG..MEF.I..RV
  21 IVDDTIVIK.KrT.A...NNG..TYFMQ.PIG..-.AD.KSKI.A...DITLKLntLRK.N..NP
  22 IENDVLTIRsV.Y.M...GDV..YYYM-.PIP..K.ND.TPKN.I...EKMKEK..IREiL..KE
  23 IENDVLTIRsV.Y.M...GEV..YYYM-.PIP..K.ND.TPEN.I...EKMKEK..IREiL..KE
  24 EEDGFLLIM.A.K.P...YNQ..PPFLHgPVGvdT.NK.LPIV.I...EKAKKY..FET.Q..GY
  25 RTPNLFWIR.Q.T.R...PEV..-RYWA.PVG..-.-D.WNAV.A...DWANCP..MMT.A..GR
  26 FESGLCWIR.Q.T.RhvdGAD..YIFWA.PIG..DwNS.IDWVnL...PLFKRG..LHM.Q..RV
  27 KTEKLLIII.G.E.Y...KGE..SFFIT.PCC..T.VD.----.V...EITKEL..LAK.Y..KK
  28 RVGDSPVVL.G.KgY...DGE..EYFLP.PLG..-.GD.VAGA.L...RVL---..---.L..DA
  29 RLGDALVVL.G.RgY...GGE..AYALP.PL-..S.GD.VTGA.L...RTLLAD..GFT.IygAD


      0          100         110         120     
     |            |           |           |     
   1 NF.CM.LG.VCSNMR.ADLE.AILPERFIFTED.R.AYAD...
   2 PF.CM.LG.VCSCMR.EDLE.AIMPGQFGFTVD.R.DYADyiy
   3 PF.CM.LG.VCSCMR.EDLE.AIMPGQFGFTVD.R.DYADyiy
   4 NF.CM.LG.VCSNMR.ADLE.AILPERFIFTED.R.AYADyiy
   5 EF.IV.LG.ISPENM.ATLK.ELYPEHFEYEEM.R.DSFDyvy
   6 KF.IM.LG.VSPENI.IVLN.SLFPESFEYKEM.R.DSFDyvy
   7 NT.PL.IF.IDPDTA.LWIR.ELEPD-LELVPD.R.DNFEyvy
   8 NL.RF.HS.LTLGQK.DDLK.DNFVGVFDFTYN.R.DRSDyvy
   9 NL.RF.HS.LTLEQK.DDLK.DNFVGVFDFTYN.R.DRSDyvy
  10 ET.PI.EL.IDPDTA.QWLQ.ELDPE-LALMPD.R.NNFEyvy
  11 NL.RF.HS.LTLEQK.DDLK.DNFVGVFDFTYN.R.DRSDyvy
  12 NL.KF.HS.LTSEQK.DDLR.DNFVGVFDFTYN.R.DRSDyiy
  13 EA.PL.LI.LEPWQY.SWMR.EHYP-TLKLKPD.R.EFFDyvy
  14 NNkPL.ML.IDPETA.KCMK.EIDPD-LILVPD.L.NHFEyvy
  15 PF.TM.RS.LGEEMK.DELE.RLMPEKFEFIYN.R.DRSDyvy
  16 PL.IF.MG.VTPDIH.RCIE.EHCSAEYYFIED.E.AYCDyiy
  17 KI.YL.RG.ITTEVV.EFLK.EKYPGRFEYIEE.R.DLFDyiy
  18 PL.EL.HS.LQSNEV.EELE.SYFPHTFEITQR.R.DRFDyvy
  19 DY.LF.KD.AEEEFV.KDFK.ELYDNNFTIEED.R.DNADyiy
  20 PE.EL.AS.LWREVLgDRVTvQETPGQWDYLYDsA.DLADlkg
  21 DFkYL.YGdVETPFL.EQLH.ENFGNLVTSHED.K.NNFDyif
  22 NV.AI.HY.FTEYWY.EKLK.----DDFNLQEK.R.DYEDyiy
  23 NV.AI.NY.FTEYWY.EKLK.----DDFNLQEK.R.DYEDyiy
  24 KF.ML.KR.ASQKTI.DMLT.Q-CGMKFESLLE.R.DLSDyvy
  25 TF.I-.-R.VPQQLA.DLWQ.AALGDGVQVQED.R.DQWDyly
  26 PE.ML.CS.LLQEILpRKINiEETPGQWEYIYStK.DLTTlsg
  27 WM.ILsKS.FLDNNT.NVFN.LPFLKELKIEED.R.DNFDyvy
  28 GM.TL.YG.ADEPFV.SRY-.-LAVGGVAVEED.R.DAFDylh
  29 DT.FL.ER.HGADAA.ITVE.E-DRDGFDYLYL.RsDLADlpg