# List of top-scoring protein chains for T0372.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wa3A 205 1.86e+00 1vlwA 217 1.90e+00 c.1.10.1 108868 1wr2A 238 3.99e+00 1avbA 226 4.19e+00 1led b.29.1.1 24158 1ryaA 160 4.44e+00 d.113.1.5 105122 1qqdB 99 4.66e+00 1agdB b.1.1.2 20770 3fruB 99 5.11e+00 1agdB b.1.1.2 20658 1kjvB 100 5.15e+00 b.1.1.2 77423 1hlaM 97 6.65e+00 1agdB b.1.1.2 20669 1x7qB 99 6.69e+00 1k5nB 100 6.75e+00 b.1.1.2 77268 1ypzB 102 6.91e+00 1ao7B 100 6.99e+00 1agdB b.1.1.2 20697 2f53B 100 7.06e+00 1ce6B 108 7.52e+00 1agdB b.1.1.2 20820 1py4A 100 7.57e+00 b.1.1.2 95323 1vhoA 346 8.57e+00 b.49.3.1,c.56.5.4 100694,100695 1lk2B 99 9.67e+00 b.1.1.2 91058 1rjyB 100 9.75e+00 1ddhB 99 9.79e+00 1agdB b.1.1.2 20846 2fikB 99 9.80e+00 1qo3B 100 9.89e+00 1agdB b.1.1.2 20842 2f8oA 100 1.03e+01 1m56C 266 1.05e+01 f.25.1.1 74474 2fafA 608 1.05e+01 1biiB 119 1.08e+01 1agdB b.1.1.2 20844 1xzh 214 1.30e+01 1cex c.69.1.30 31293 2cuyA 305 1.40e+01 1tolA 222 1.76e+01 1g3p b.37.1.1,d.212.1.1 24790,39587 1fgp 70 1.76e+01 1g3p b.37.1.1 24795 1yelA 104 1.83e+01 2a9uA 144 1.95e+01 1g3p 217 2.11e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 2f1xA 161 2.18e+01 1xnd 190 2.22e+01 1axkA b.29.1.11 24321 2fiqA 420 2.26e+01 2fojA 155 2.35e+01 2f1wA 158 2.35e+01 2f1yA 159 2.47e+01 2g3pA 225 2.74e+01 1g3p b.37.1.1,b.37.1.1 24791,24792 1zvdA 380 2.90e+01 1f3uA 118 3.07e+01 1f3uA b.65.1.1 27521 2btoA 473 3.28e+01 1sh7A 284 3.43e+01 1i51B 105 4.18e+01 1x64A 89 4.27e+01 2gfoA 396 4.35e+01 1xypA 190 4.42e+01 1axkA b.29.1.11 24327 1cqa 133 4.44e+01 3nul d.110.1.1 40890 2bvdA 283 4.49e+01 2bv9A 290 4.50e+01 1hixA 190 4.55e+01 b.29.1.11 65839 1cfr 285 4.58e+01 1cfr c.52.1.7 33312 2f84A 323 4.65e+01 1z81A 229 4.76e+01 2bkwA 385 5.17e+01 1a0p 290 5.18e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1bbpA 173 5.23e+01 1bbpA b.60.1.1 27147 1meeA 275 5.54e+01 1gci c.41.1.1 32540 1mfaH 120 5.61e+01 2c4nA 250 5.80e+01 1scjA 275 5.80e+01 1gci c.41.1.1 32486 1vpqA 273 6.29e+01 1ybyA 215 6.59e+01 1vhmA 195 6.67e+01 d.110.2.1 100691 1m4wA 197 6.81e+01 b.29.1.11 84801 2bzvA 181 7.17e+01 2citA 282 7.29e+01 1dj0A 264 7.66e+01 1dj0A d.265.1.1 90337 1hfx 123 7.80e+01 3lzt d.2.1.2 36600 1y5iA 1246 7.84e+01 1q16A 1247 7.84e+01 b.52.2.2,c.81.1.1 95546,95547 1f9aA 168 7.89e+01 1f9aA c.26.1.3 31602 2hgf 97 8.26e+01 1bhtA g.10.1.1 44607 1wekA 217 8.30e+01 1shlA 245 8.35e+01 c.17.1.1 105556 1qlmA 316 8.59e+01 1qlmA d.147.1.1 41765 1vk1A 242 8.76e+01 d.268.1.2 108634 1m5zA 91 8.86e+01 b.36.1.1 78676 1b7gO 340 8.91e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 2prd 174 8.94e+01 2prd b.40.5.1 25435 1tyyA 339 8.99e+01