# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d4pA 141 3.31e-01 1vjeA 166 1.15e+00 d.185.1.2 100807 1innA 166 1.15e+00 1j98A d.185.1.2 62608 1zbfA 142 1.44e+00 1oj4A 283 2.33e+00 d.14.1.5,d.58.26.5 93083,93084 1zvdA 380 2.51e+00 1pjcA 361 2.86e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 1vk8A 106 3.50e+00 d.58.48.1 108636 1gw5S 142 3.60e+00 d.110.4.2 70633 1h6zA 913 3.92e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1vhmA 195 4.84e+00 d.110.2.1 100691 1lx7A 253 4.99e+00 c.56.2.1 74329 1p3dA 475 5.40e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1rxyA 253 5.96e+00 c.56.2.1 98065 1vhsA 175 7.42e+00 d.108.1.1 100698 1ujmA 342 7.52e+00 1zo0A 126 7.55e+00 1z5nA 242 7.56e+00 1t4oA 117 7.72e+00 d.50.1.1 106425 1g3p 217 7.89e+00 1g3p b.37.1.1,b.37.1.1 24788,24789 1y1pA 342 8.03e+00 1vj1A 363 8.62e+00 b.35.1.2,c.2.1.1 100794,100795 1hi9A 274 8.64e+00 1hi9A c.99.1.1 61063 1z5oA 242 8.70e+00 1z4rA 168 9.92e+00 1vefA 395 9.92e+00 1ryaA 160 9.93e+00 d.113.1.5 105122 1o0xA 262 1.03e+01 d.127.1.1 80755 1zejA 293 1.03e+01 1jysA 242 1.06e+01 c.56.2.1 77216 1vc1A 110 1.06e+01 c.13.2.1 108493 1s62A 106 1.10e+01 2a1iA 146 1.10e+01 1id1A 153 1.11e+01 1id1A c.2.1.9 62286 1cliA 345 1.17e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2c3zA 222 1.20e+01 1khtA 192 1.21e+01 c.37.1.1 84401 1a8s 273 1.21e+01 1brt c.69.1.12 34710 1kblA 873 1.24e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2c0cA 362 1.33e+01 1xm7A 195 1.35e+01 1lxjA 104 1.46e+01 d.58.48.1 84736 1dik 874 1.51e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1th0A 226 1.52e+01 d.3.1.7 106903 1dj0A 264 1.56e+01 1dj0A d.265.1.1 90337 1ec7A 446 1.59e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1ki9A 192 1.60e+01 c.37.1.1 84404 1hyvA 166 1.64e+01 1b9dA c.55.3.2 61424 1a53 247 1.73e+01 1a53 c.1.2.4 28564 1up7A 417 1.73e+01 1igs 248 1.79e+01 1a53 c.1.2.4 28565 1qlmA 316 1.85e+01 1qlmA d.147.1.1 41765 2bswA 146 1.85e+01 1q1gA 276 1.86e+01 c.56.2.1 95574 1sjdA 368 1.87e+01 c.1.11.2,d.54.1.1 105632,105633 1up6A 416 1.88e+01 c.2.1.5,d.162.1.2 107976,107977 1o8uA 257 1.88e+01 c.14.1.3 81194 1atiA 505 1.89e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 1lucA 355 1.89e+01 1lucA c.1.16.1 29547 1je0A 236 1.90e+01 c.56.2.1 66581 1xo7A 166 2.01e+01 1t6aA 126 2.01e+01 d.129.8.1 106555 2bkaA 242 2.03e+01 1mgtA 174 2.05e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1jxhA 288 2.08e+01 c.72.1.2 67415 1jf8A 131 2.11e+01 c.44.1.1 66621 1szoA 257 2.14e+01 c.14.1.3 106164 1zyeA 220 2.14e+01 2plc 274 2.14e+01 2plc c.1.18.2 29614 2bh1X 96 2.14e+01 1j8mF 297 2.21e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1srqA 341 2.29e+01 e.55.1.1 105967 1kyhA 276 2.30e+01 c.72.1.4 73222 1o20A 427 2.34e+01 c.82.1.1 86556 2bsxA 253 2.42e+01 1xt8A 292 2.51e+01 1k8kF 168 2.55e+01 d.198.2.1 68312 2afcA 168 2.59e+01 2fg1A 158 2.60e+01 1v37A 177 2.60e+01 1i1dA 161 2.60e+01 1i21A d.108.1.1 61526 1qtwA 285 2.61e+01 1qumA c.1.15.1 29392 1xtoA 311 2.66e+01 1j8yF 297 2.74e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1uh5A 329 2.75e+01 c.2.1.2 107840 1t4nA 94 2.75e+01 d.50.1.1 106424 2akaB 299 2.76e+01 1usyA 275 2.83e+01 1l2uA 245 2.88e+01 c.1.2.3 73516 1bl3A 160 2.95e+01 1b9dA c.55.3.2 33655 1q6zA 528 3.05e+01 2ptd 298 3.11e+01 2plc c.1.18.2 29605 1wu7A 434 3.13e+01 1r5jA 337 3.16e+01 c.77.1.5 97097 1u55A 188 3.19e+01 d.278.1.1 107677 1pkp 150 3.23e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1pv9A 348 3.25e+01 c.55.2.1,d.127.1.1 95157,95158 1x8gA 227 3.30e+01 1x8hA 228 3.32e+01 1poiB 260 3.37e+01 1poiB c.124.1.3 34155 1y1nA 291 3.42e+01 1h3qA 140 3.53e+01 d.110.4.3 76652 1kdj 102 3.54e+01 1plc b.6.1.1 22864 1bfd 528 3.58e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 2g3aA 152 3.64e+01 1n6zA 105 3.66e+01 d.263.1.1 85369 1xewX 182 3.71e+01 1ik9A 213 3.72e+01 b.59.1.1,h.1.11.1 66176,66177 1qmvA 197 3.78e+01 1qq2A c.47.1.10 33066 1khiA 176 3.89e+01 b.34.5.2,b.40.4.5 77408,77409 1on0A 158 3.90e+01 d.108.1.1 87095 1v6tA 255 3.91e+01 2fg9A 178 3.94e+01 1irsA 112 3.97e+01 1qqgA b.55.1.2 26991 1l6rA 227 4.01e+01 c.108.1.10 77768 1crb 134 4.03e+01 1hmt b.60.1.2 27220 1a41 234 4.04e+01 1a41 d.163.1.2 42174 1ecpA 238 4.06e+01 1ecpA c.56.2.1 33775 1x9zA 188 4.10e+01 1m2xA 223 4.17e+01 d.157.1.1 84764 1lssA 140 4.19e+01 c.2.1.9 74246 1rf6A 427 4.23e+01 d.68.2.2 97366 1p99A 295 4.28e+01 c.94.1.1 94384 1z85A 234 4.28e+01 1g2rA 100 4.32e+01 1g2rA d.192.1.1 60231 1itwA 741 4.34e+01 c.77.1.2 76793 1k8kB 394 4.37e+01 c.55.1.1 68307 1nksA 194 4.44e+01 1nksA c.37.1.1 31886 1wduA 245 4.58e+01 d.151.1.1 109286 1p1cA 199 4.73e+01 c.66.1.16 87669 1q67A 231 4.77e+01 b.55.1.7 95960 1ml8A 134 4.93e+01 d.227.1.2 85013 1wl9A 440 4.95e+01 1nv8A 284 4.95e+01 c.66.1.30 86224 2bwvA 440 4.95e+01 1ktgA 138 4.98e+01 d.113.1.1 72972 2fl4A 149 5.00e+01 1omwA 689 5.00e+01 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1v2dA 381 5.11e+01 c.67.1.1 108281 1j98A 157 5.16e+01 1j98A d.185.1.2 62755 1w7jB 151 5.20e+01 1mvoA 136 5.29e+01 c.23.1.1 79513 1yw4A 341 5.33e+01 1yqdA 366 5.33e+01 2awpA 198 5.34e+01 1va4A 279 5.42e+01 c.69.1.12 108458 16pk 415 5.43e+01 16pk c.86.1.1 35454 2bzpA 226 5.46e+01 1uteA 313 5.47e+01 1uteA d.159.1.1 42078 1h2bA 359 5.47e+01 b.35.1.2,c.2.1.1 90543,90544 1vk1A 242 5.47e+01 d.268.1.2 108634 1yqhA 109 5.48e+01 1w6tA 444 5.53e+01 1ypfA 336 5.58e+01 1l8bA 190 5.60e+01 d.86.1.1 73683 1sl4A 155 5.67e+01 d.169.1.1 105710 1uyjA 296 5.71e+01 f.8.1.2 108143 1l8aA 886 5.82e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1j6wA 175 5.82e+01 1j98A d.185.1.2 62663 2gx9A 129 5.83e+01 1az9 457 5.83e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 2fymA 431 5.84e+01 1b93A 152 5.86e+01 1b93A c.24.1.2 31507 1ulyA 192 5.99e+01 3cla 213 6.01e+01 3cla c.43.1.1 32610 2arzA 247 6.08e+01 1tt7A 330 6.16e+01 2aefA 234 6.30e+01 1ej1A 190 6.31e+01 1ejhA d.86.1.1 40144 1yt3A 375 6.46e+01 2hvm 273 6.50e+01 1cnv c.1.8.5 28985 1mtyD 512 6.55e+01 1mhyD a.25.1.2 16742 1itg 166 6.56e+01 1b9dA c.55.3.2 33661 2fz4A 237 6.70e+01 1rjdA 334 6.73e+01 c.66.1.37 97558 1hw7A 255 6.75e+01 1i7fA d.193.1.1 61297 1dzkA 157 6.77e+01 1obpA b.60.1.1 27096 1j24A 143 6.79e+01 c.52.1.20 84008 1xc3A 302 6.81e+01 1iqoA 88 6.88e+01 d.214.1.1 71277 1d1qA 161 7.02e+01 1dg9A c.44.1.1 32642 1knqA 175 7.09e+01 c.37.1.17 72786 1v4pA 157 7.10e+01 1vl2A 421 7.17e+01 c.26.2.1,d.210.1.1 108708,108709 1d1gA 168 7.21e+01 1d1gA c.71.1.1 34889 1onrA 316 7.24e+01 1onrA c.1.10.1 29169 1esiA 262 7.38e+01 1skf e.3.1.1 42682 1exqA 154 7.41e+01 1b9dA c.55.3.2 33646 1v3vA 333 7.56e+01 b.35.1.2,c.2.1.1 108345,108346 1z82A 335 7.71e+01 1qstA 160 7.82e+01 1yghA d.108.1.1 40804 1tu1A 148 7.83e+01 d.107.1.3 107316 1ad2 228 7.85e+01 1ad2 e.24.1.1 43353 1zccA 248 7.90e+01 1yw3A 208 7.90e+01 1fpzA 212 8.00e+01 1fpzA c.45.1.1 59976 1pb7A 292 8.00e+01 c.94.1.1 88025 1mwpA 96 8.09e+01 1mwpA d.170.2.1 42453 1y5eA 169 8.17e+01 1o5oA 221 8.22e+01 c.61.1.1 92509 1dqaA 467 8.23e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1prxA 224 8.28e+01 1prxA c.47.1.10 33076 1jljA 189 8.39e+01 c.57.1.1 63169 1wsrA 375 8.65e+01 1ihcA 188 8.66e+01 1di6A c.57.1.1 62379 2bydA 323 8.74e+01 1xfjA 261 8.75e+01 d.194.1.2 109585 1i12A 160 8.83e+01 1i21A d.108.1.1 61515 2c5qA 240 8.84e+01 1tp9A 162 8.85e+01 1fecA 490 8.89e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1cnv 299 8.96e+01 1cnv c.1.8.5 28989 2bhuA 602 8.96e+01 1fu1A 203 8.97e+01 1fu1B b.59.1.1,h.1.11.1 27076,45630 1bu6O 501 8.98e+01 1glcG c.55.1.4,c.55.1.4 33499,33500