# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fjgM 126 9.35e-01 1fjfM a.156.1.1 16293 2fg9A 178 1.34e+00 1pjcA 361 1.75e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 1lqtA 456 2.01e+00 c.3.1.1,c.4.1.1 74198,74199 1vc1A 110 2.17e+00 c.13.2.1 108493 4pfk 319 2.32e+00 3pfk c.89.1.1 35582 1wr2A 238 2.89e+00 1tyyA 339 2.98e+00 2plc 274 3.13e+00 2plc c.1.18.2 29614 1bykA 255 3.77e+00 1bykA c.93.1.1 35706 1eljA 381 3.86e+00 4mbp c.94.1.1 35791 2a1iA 146 4.31e+00 1z4rA 168 4.41e+00 1vk1A 242 4.83e+00 d.268.1.2 108634 1qstA 160 5.46e+00 1yghA d.108.1.1 40804 1xt8A 292 5.62e+00 1xypA 190 5.88e+00 1axkA b.29.1.11 24327 1ygmA 118 6.12e+00 1nksA 194 6.13e+00 1nksA c.37.1.1 31886 1vk8A 106 6.23e+00 d.58.48.1 108636 1ve9A 347 6.41e+00 c.4.1.2,d.16.1.3 100571,100572 1nstA 325 7.12e+00 1nstA c.37.1.5 31951 1a9nA 176 7.58e+00 1a9nA c.10.2.4 30875 1pkp 150 7.73e+00 1pkp d.14.1.1,d.50.1.2 37551,38787 1evlA 401 7.74e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 1dgnA 89 8.28e+00 1dgnA a.77.1.3 18436 1vhsA 175 8.42e+00 d.108.1.1 100698 1go3F 107 8.73e+00 a.60.8.2 65407 1wekA 217 9.17e+00 1lk9A 448 9.34e+00 c.67.1.1 78057 1ad2 228 9.96e+00 1ad2 e.24.1.1 43353 2g0qA 173 1.09e+01 1cfr 285 1.27e+01 1cfr c.52.1.7 33312 1h75A 81 1.29e+01 1h75A c.47.1.1 60716 1t0qA 498 1.34e+01 a.25.1.2 106220 2au3A 407 1.37e+01 1w1kA 560 1.38e+01 d.58.32.1,d.145.1.1 109059,109060 1m5q1 130 1.38e+01 1g3p 217 1.39e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 2f1wA 158 1.44e+01 1xauA 122 1.48e+01 2c8mA 262 1.51e+01 1ki9A 192 1.56e+01 c.37.1.1 84404 1vqzA 341 1.59e+01 1odoA 408 1.59e+01 a.104.1.1 92783 1sqgA 429 1.60e+01 a.79.1.3,c.66.1.38 105912,105913 1e8gA 560 1.61e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1m2xA 223 1.64e+01 d.157.1.1 84764 2d4pA 141 1.69e+01 1vjeA 166 1.71e+01 d.185.1.2 100807 1l3iA 192 1.72e+01 c.66.1.22 77676 1dj0A 264 1.73e+01 1dj0A d.265.1.1 90337 1lucA 355 1.76e+01 1lucA c.1.16.1 29547 1innA 166 1.79e+01 1j98A d.185.1.2 62608 1zk8A 183 1.84e+01 1p3dA 475 1.86e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1lssA 140 1.86e+01 c.2.1.9 74246 2bmfA 451 2.02e+01 1yt3A 375 2.03e+01 2c0cA 362 2.07e+01 1vlwA 217 2.20e+01 c.1.10.1 108868 2aq5A 402 2.21e+01 1t6gC 184 2.25e+01 b.29.1.11 106569 1fr2A 86 2.26e+01 a.28.2.1 83256 1pzxA 289 2.29e+01 c.119.1.1 95484 1r77A 103 2.31e+01 1aa8A 347 2.35e+01 1an9A 1kb9A 431 2.35e+01 d.185.1.1,d.185.1.1 77311,77312 2fojA 155 2.42e+01 1ghhA 81 2.45e+01 1ghhA d.57.1.1 38940 1r5lA 262 2.49e+01 a.5.3.1,c.13.1.1 97099,97100 1f8fA 371 2.49e+01 b.35.1.2,c.2.1.1 83246,83247 1x9zA 188 2.58e+01 2c31A 568 2.61e+01 1pvxA 194 2.61e+01 1axkA b.29.1.11 24341 1zyeA 220 2.65e+01 1yy6A 155 2.69e+01 1oj4A 283 2.69e+01 d.14.1.5,d.58.26.5 93083,93084 2fymA 431 2.74e+01 1an9A 340 2.84e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1wrmA 165 2.84e+01 1pfkA 320 2.86e+01 3pfk c.89.1.1 35575 1bk1 184 2.91e+01 1axkA b.29.1.11 24340 1yqhA 109 2.91e+01 1yiiA 320 2.96e+01 1kqpA 271 3.01e+01 c.26.2.1 72883 1gc5A 467 3.02e+01 1gc5A c.72.1.3 60429 2a7yA 83 3.08e+01 1fxd 58 3.09e+01 1fxd d.58.1.4 38941 1th0A 226 3.17e+01 d.3.1.7 106903 1l2tA 235 3.18e+01 c.37.1.12 73514 1ih8A 271 3.19e+01 2nsyA c.26.2.1 62377 1eexB 224 3.20e+01 1dioB c.51.3.1 33213 1xm7A 195 3.25e+01 1v7wA 807 3.25e+01 a.102.1.4,b.30.5.3 108411,108412 1u6tA 121 3.26e+01 2ewcA 126 3.26e+01 1zczA 464 3.29e+01 1wcgA 464 3.39e+01 1huxA 270 3.41e+01 1huxA c.55.1.5 61278 1qc7A 101 3.45e+01 1qc7A a.118.14.1 18456 1zxxA 319 3.55e+01 1pvdA 537 3.63e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1yz7A 188 3.67e+01 1v7zA 260 3.73e+01 c.125.1.1 100488 1sauA 115 3.74e+01 1emvA 86 3.76e+01 1cei a.28.2.1 16944 1u55A 188 3.77e+01 d.278.1.1 107677 1eueA 86 3.78e+01 1cyo d.120.1.1 59504 1ezwA 349 3.79e+01 1ezwA c.1.16.3 29558 1mod 154 3.81e+01 1a6m a.1.1.2 15107 1jjtA 228 4.05e+01 1a7tA d.157.1.1 63139 2fg1A 158 4.06e+01 2pfkA 320 4.09e+01 3pfk c.89.1.1 35577 2cunA 410 4.11e+01 1sbzA 197 4.32e+01 1ia9A 280 4.32e+01 1ia9A d.144.1.5 62113 1jjeA 222 4.33e+01 1a7tA d.157.1.1 63117 1ro0A 216 4.35e+01 d.264.1.2 97664 2fafA 608 4.43e+01 1t6sA 162 4.45e+01 1xw4X 110 4.46e+01 1xo7A 166 4.46e+01 1i1dA 161 4.49e+01 1i21A d.108.1.1 61526 1q7zA 566 4.52e+01 c.1.21.2,c.1.26.1 96090,96091 2arsA 262 4.53e+01 1k2eA 156 4.75e+01 d.113.1.1 72010 1ro2A 216 4.75e+01 d.264.1.2 97665 2ng1 293 4.76e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 2c3zA 222 4.78e+01 1xqiA 195 4.82e+01 2bkyX 89 4.82e+01 1sg7A 96 4.85e+01 1q2wA 308 4.89e+01 b.47.1.4 88355 2bv9A 290 4.92e+01 2gx9A 129 4.95e+01 1cnv 299 4.96e+01 1cnv c.1.8.5 28989 2azjA 289 4.99e+01 1wryA 121 5.01e+01 1wt4A 73 5.04e+01 1yna 194 5.05e+01 1axkA b.29.1.11 24335 2ftrA 108 5.07e+01 1vp8A 201 5.17e+01 1tfjA 219 5.20e+01 1khyA 148 5.21e+01 a.174.1.1 77410 1c4kA 730 5.26e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1e8aA 91 5.27e+01 1b4cA a.39.1.2 17188 1w6tA 444 5.28e+01 1ws6A 171 5.42e+01 2blfB 81 5.42e+01 1wtjA 343 5.44e+01 1s2oA 244 5.48e+01 1odkA 235 5.49e+01 c.56.2.1 86863 1njrA 284 5.52e+01 c.50.1.2 103858 1zccA 248 5.56e+01 1wy1A 172 5.57e+01 1r5jA 337 5.59e+01 c.77.1.5 97097 2fiqA 420 5.60e+01 1wa3A 205 5.63e+01 1zzmA 259 5.64e+01 1qmhA 347 5.67e+01 1qmhA c.47.2.1,d.68.2.1 33082,39568 1ezvA 430 5.73e+01 1be3A d.185.1.1,d.185.1.1 59541,59542 1z2kA 109 5.76e+01 2ptd 298 5.82e+01 2plc c.1.18.2 29605 1yvoA 172 5.89e+01 1un8A 552 5.93e+01 c.119.1.2,a.208.1.1 103806,99661 1te2A 226 5.95e+01 c.108.1.6 106792 2bswA 146 5.96e+01 1ta9A 450 5.99e+01 1o0xA 262 6.01e+01 d.127.1.1 80755 1zbfA 142 6.02e+01 1q2yA 140 6.03e+01 d.108.1.1 95655 1lxjA 104 6.03e+01 d.58.48.1 84736 2citA 282 6.07e+01 1bjaA 95 6.11e+01 1bjaA a.4.5.9 16122 2iv2X 715 6.14e+01 1a53 247 6.15e+01 1a53 c.1.2.4 28564 1kjvB 100 6.16e+01 b.1.1.2 77423 1vls 146 6.16e+01 1vls a.24.2.1 16532 1cei 94 6.21e+01 1cei a.28.2.1 16939 1hr6B 443 6.24e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1o69A 394 6.26e+01 c.67.1.4 92560 1ls1A 295 6.33e+01 a.24.13.1,c.37.1.10 78170,78171 1nv8A 284 6.34e+01 c.66.1.30 86224 2f5xA 312 6.35e+01 1mtyG 162 6.38e+01 1mtyG a.23.3.1 16498 1d1qA 161 6.38e+01 1dg9A c.44.1.1 32642 1mrzA 293 6.38e+01 b.43.5.1,c.26.1.3 91452,91453 1zx8A 136 6.39e+01 2bx6A 350 6.46e+01 2biiA 424 6.48e+01 1kao 167 6.49e+01 1ctqA c.37.1.8 32014 3thiA 371 6.54e+01 2thiA c.94.1.1 35792 1om2A 95 6.55e+01 1om2A a.23.4.1 16520 1qorA 327 6.56e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1dbxA 158 6.61e+01 1dbuA d.116.1.1 40928 1d2nA 272 6.80e+01 1d2nA c.37.1.20 32428 1qj2B 809 6.84e+01 1qj2B 1ed8A 449 6.86e+01 1b8jA c.76.1.1 34988 2hvm 273 6.87e+01 1cnv c.1.8.5 28985 2bl1A 172 6.95e+01 1yr0A 175 6.96e+01 1bby 69 7.00e+01 2bby a.4.5.15 16149 4xis 387 7.00e+01 4xis c.1.15.3 29421 1hs6A 611 7.10e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1x7oA 287 7.11e+01 1vflA 356 7.13e+01 1muwA 386 7.17e+01 c.1.15.3 79495 7a3hA 303 7.20e+01 7a3hA c.1.8.3 28817 1e5kA 201 7.22e+01 1fr9A c.68.1.8 34578 1wjgA 137 7.24e+01 1t4nA 94 7.31e+01 d.50.1.1 106424 1n62B 809 7.32e+01 d.41.1.1,d.133.1.1 80092,80093 1igs 248 7.38e+01 1a53 c.1.2.4 28565 1que 303 7.42e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1zxiB 809 7.45e+01 1udvA 89 7.47e+01 d.68.6.1 99224 1xw3A 110 7.48e+01 1gtkA 313 7.49e+01 c.94.1.1,d.50.2.1 76346,76347 1yv5A 374 7.52e+01 2dcyA 185 7.58e+01 1t4oA 117 7.65e+01 d.50.1.1 106425 1h1dA 221 7.71e+01 c.66.1.1 83452 1j8mF 297 7.75e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1yq7A 374 7.75e+01 1riqA 465 7.79e+01 a.203.1.1,d.104.1.1 97516,97517 1d9tA 289 7.88e+01 1deaA 1wbeA 209 7.92e+01 1q7lA 198 7.94e+01 c.56.5.4 96044 1jt6A 188 8.03e+01 a.4.1.9,a.121.1.1 67247,67248 1xhdA 173 8.04e+01 1np6A 174 8.06e+01 c.37.1.10 85954 3xis 387 8.06e+01 4xis c.1.15.3 29423 1swxA 209 8.10e+01 a.224.1.1 106075 1m7bA 184 8.19e+01 c.37.1.8 74572 1yhlA 362 8.24e+01 1zarA 282 8.24e+01 1a4mA 349 8.24e+01 1a4mA c.1.9.1 29014 1vjzA 341 8.24e+01 c.1.8.3 100838 2pspA 106 8.28e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1dt9A 437 8.29e+01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1bzpA 153 8.29e+01 1a6m a.1.1.2 15020 1uz3A 102 8.36e+01 1nsf 273 8.40e+01 1d2nA c.37.1.20 32429 1ne7A 289 8.47e+01 c.124.1.1 91833 1x67A 146 8.54e+01 1xnb 185 8.59e+01 1axkA b.29.1.11 24308 1vm7A 311 8.60e+01 c.72.1.1 108884 1utuA 108 8.66e+01 1wvcA 259 8.75e+01 1aru 344 8.79e+01 1arv a.93.1.1 18589 1ykiA 217 8.79e+01 2bzpA 226 8.88e+01 1w34A 304 8.90e+01 1whuA 104 8.90e+01 1i12A 160 8.97e+01 1i21A d.108.1.1 61515 1xxnA 185 8.99e+01