# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h6zA 913 2.88e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2d4pA 141 2.88e+00 1zbfA 142 4.33e+00 1gw5S 142 4.66e+00 d.110.4.2 70633 1oj4A 283 4.72e+00 d.14.1.5,d.58.26.5 93083,93084 1a8s 273 4.86e+00 1brt c.69.1.12 34710 1innA 166 6.13e+00 1j98A d.185.1.2 62608 1vjeA 166 6.13e+00 d.185.1.2 100807 1zvdA 380 6.18e+00 1wu7A 434 6.27e+00 1rxyA 253 7.53e+00 c.56.2.1 98065 1zo0A 126 7.56e+00 1atiA 505 8.29e+00 1atiA c.51.1.1,d.104.1.1 33196,40745 1y1nA 291 8.44e+00 1lx7A 253 8.51e+00 c.56.2.1 74329 1v6tA 255 8.90e+00 1z4rA 168 8.95e+00 1o0xA 262 9.49e+00 d.127.1.1 80755 1vk8A 106 1.13e+01 d.58.48.1 108636 2plc 274 1.18e+01 2plc c.1.18.2 29614 1uh5A 329 1.36e+01 c.2.1.2 107840 2bh1X 96 1.38e+01 1vefA 395 1.40e+01 1xm7A 195 1.51e+01 1g3p 217 1.52e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 1vhsA 175 1.53e+01 d.108.1.1 100698 2c3zA 222 1.69e+01 1vhmA 195 1.70e+01 d.110.2.1 100691 1k8kF 168 1.86e+01 d.198.2.1 68312 1je0A 236 1.86e+01 c.56.2.1 66581 1ec7A 446 1.91e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2c0cA 362 1.95e+01 1v37A 177 1.99e+01 1zyeA 220 2.04e+01 1xo7A 166 2.10e+01 1vj1A 363 2.16e+01 b.35.1.2,c.2.1.1 100794,100795 1zejA 293 2.20e+01 1hi9A 274 2.23e+01 1hi9A c.99.1.1 61063 2ptd 298 2.33e+01 2plc c.1.18.2 29605 1t4oA 117 2.33e+01 d.50.1.1 106425 1kblA 873 2.42e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1z5nA 242 2.47e+01 2a2nA 176 2.48e+01 2fg1A 158 2.49e+01 1up7A 417 2.49e+01 1ujmA 342 2.56e+01 1y1pA 342 2.57e+01 1ecpA 238 2.58e+01 1ecpA c.56.2.1 33775 1knqA 175 2.58e+01 c.37.1.17 72786 1xtoA 311 2.60e+01 2bsxA 253 2.68e+01 1z5oA 242 2.78e+01 1jf8A 131 2.81e+01 c.44.1.1 66621 1rf6A 427 2.82e+01 d.68.2.2 97366 1lfdA 87 2.84e+01 1lfdA d.15.1.5 37622 2a1iA 146 2.88e+01 1jysA 242 2.88e+01 c.56.2.1 77216 2afcA 168 2.94e+01 2gd9A 189 2.96e+01 1p3dA 475 2.96e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1a53 247 2.98e+01 1a53 c.1.2.4 28564 1up6A 416 3.00e+01 c.2.1.5,d.162.1.2 107976,107977 1zzoA 136 3.06e+01 1xt8A 292 3.12e+01 1vc1A 110 3.13e+01 c.13.2.1 108493 2fz4A 237 3.17e+01 1s62A 106 3.17e+01 1ik9A 213 3.18e+01 b.59.1.1,h.1.11.1 66176,66177 1t4nA 94 3.21e+01 d.50.1.1 106424 1i1dA 161 3.22e+01 1i21A d.108.1.1 61526 1k8kB 394 3.23e+01 c.55.1.1 68307 1q67A 231 3.25e+01 b.55.1.7 95960 1th0A 226 3.46e+01 d.3.1.7 106903 1sjdA 368 3.49e+01 c.1.11.2,d.54.1.1 105632,105633 1va4A 279 3.50e+01 c.69.1.12 108458 1f9aA 168 3.60e+01 1f9aA c.26.1.3 31602 1qmvA 197 3.60e+01 1qq2A c.47.1.10 33066 1igs 248 3.74e+01 1a53 c.1.2.4 28565 1qlmA 316 3.86e+01 1qlmA d.147.1.1 41765 1i12A 160 4.00e+01 1i21A d.108.1.1 61515 1ryp2 233 4.04e+01 1ryp2 1t6aA 126 4.12e+01 d.129.8.1 106555 1w6tA 444 4.21e+01 1rjdA 334 4.26e+01 c.66.1.37 97558 2fg9A 178 4.28e+01 1ryaA 160 4.32e+01 d.113.1.5 105122 1q8iA 783 4.32e+01 c.55.3.5,e.8.1.1 96208,96209 1t95A 240 4.35e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1n6zA 105 4.48e+01 d.263.1.1 85369 1ezm 301 4.51e+01 1hyt d.92.1.2 58980 1earA 147 4.51e+01 b.107.1.1,d.58.38.1 64875,64876 1ouoA 210 4.57e+01 d.4.1.6 93554 1ki9A 192 4.60e+01 c.37.1.1 84404 1r5jA 337 4.60e+01 c.77.1.5 97097 1stzA 338 4.62e+01 a.4.5.51,d.110.2.3 106009,106010 1khtA 192 4.71e+01 c.37.1.1 84401 2bl1A 172 4.76e+01 1xewX 182 4.76e+01 1u55A 188 4.80e+01 d.278.1.1 107677 1h75A 81 4.81e+01 1h75A c.47.1.1 60716 1li5B 461 4.83e+01 a.27.1.1,c.26.1.1 73914,73915 1chd 203 4.90e+01 1chd c.40.1.1 32478 1nv8A 284 4.92e+01 c.66.1.30 86224 1g2rA 100 4.98e+01 1g2rA d.192.1.1 60231 1p4cA 380 4.99e+01 c.1.4.1 94100 1dik 874 5.01e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 2bwvA 440 5.20e+01 1wl9A 440 5.20e+01 1b93A 152 5.20e+01 1b93A c.24.1.2 31507 1q2yA 140 5.24e+01 d.108.1.1 95655 2bswA 146 5.26e+01 1lssA 140 5.28e+01 c.2.1.9 74246 1j6wA 175 5.29e+01 1j98A d.185.1.2 62663 1z85A 234 5.29e+01 1cliA 345 5.30e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2bhuA 602 5.35e+01 1qorA 327 5.35e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1ws6A 171 5.37e+01 1yqdA 366 5.38e+01 1ixcA 294 5.40e+01 a.4.5.37,c.94.1.1 83764,83765 1hw7A 255 5.43e+01 1i7fA d.193.1.1 61297 2arzA 247 5.46e+01 1akz 223 5.49e+01 3eugA c.18.1.1 31007 1m2xA 223 5.52e+01 d.157.1.1 84764 1kdj 102 5.59e+01 1plc b.6.1.1 22864 1srqA 341 5.63e+01 e.55.1.1 105967 1v4pA 157 5.66e+01 1v7oA 165 5.72e+01 d.67.1.2 100480 1ift 263 5.74e+01 1mrj d.165.1.1 42211 1f8fA 371 5.84e+01 b.35.1.2,c.2.1.1 83246,83247 2bkaA 242 5.93e+01 1o8uA 257 6.00e+01 c.14.1.3 81194 1a0p 290 6.00e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1z5rA 306 6.02e+01 2d2eA 250 6.24e+01 1ulyA 192 6.25e+01 1y1uA 585 6.31e+01 1on0A 158 6.34e+01 d.108.1.1 87095 3nul 130 6.35e+01 3nul d.110.1.1 40891 1tfuA 157 6.35e+01 c.26.1.3 106859 1lxjA 104 6.40e+01 d.58.48.1 84736 1z08A 170 6.43e+01 1az9 457 6.48e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1jykA 254 6.65e+01 c.68.1.13 67458 1li5A 461 6.71e+01 a.27.1.1,c.26.1.1 73912,73913 1mjfA 281 6.82e+01 c.66.1.17 79198 1hyvA 166 6.92e+01 1b9dA c.55.3.2 61424 1hr6A 475 6.97e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1yw3A 208 6.99e+01 1bfd 528 7.15e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1u4gA 301 7.25e+01 d.92.1.2 107670 1q1gA 276 7.29e+01 c.56.2.1 95574 1lucA 355 7.38e+01 1lucA c.1.16.1 29547 1dj0A 264 7.38e+01 1dj0A d.265.1.1 90337 1kamA 194 7.45e+01 c.26.1.3 72254 2gx9A 129 7.60e+01 2ftxA 90 7.62e+01 1ygmA 118 7.67e+01 1zxoA 291 7.71e+01 2g3aA 152 7.73e+01 1yt3A 375 7.83e+01 1ekfA 365 7.84e+01 1ekfA e.17.1.1 59445 2coiA 386 7.91e+01 1v6fA 151 7.96e+01 d.109.1.2 108395 1ep3A 311 7.96e+01 2dorA c.1.4.1 28597 2fymA 431 7.97e+01 1wnaA 131 8.00e+01 1mjuH 227 8.02e+01 b.1.1.1,b.1.1.2 91302,91303 1q6zA 528 8.10e+01 1szoA 257 8.10e+01 c.14.1.3 106164 1i4wA 353 8.13e+01 c.66.1.24 66028 2cxcA 144 8.26e+01 1iibA 106 8.33e+01 1iibA c.44.2.1 32648 1e79G 272 8.36e+01 1e79G c.49.2.1 33158 2dddA 225 8.37e+01 8tlnE 316 8.45e+01 1hyt d.92.1.2 59075 2tmnE 316 8.48e+01 1hyt d.92.1.2 59055 1jxhA 288 8.48e+01 c.72.1.2 67415 7a3hA 303 8.48e+01 7a3hA c.1.8.3 28817 1h2bA 359 8.58e+01 b.35.1.2,c.2.1.1 90543,90544 1lwdA 413 8.62e+01 c.77.1.1 78265 1xmxA 385 8.64e+01 1rz3A 201 8.74e+01 c.37.1.6 98132 1qd9A 124 8.83e+01 1qu9A d.79.1.1 39758 1itwA 741 8.83e+01 c.77.1.2 76793 1yvoA 172 8.84e+01 1rcuA 195 8.87e+01 c.129.1.1 97295 1xclA 235 8.89e+01 1z82A 335 8.89e+01 1pkp 150 8.94e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1yghA 164 8.94e+01 1yghA d.108.1.1 40802