# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wekA 217 1.99e+00 1vhsA 175 2.16e+00 d.108.1.1 100698 1bykA 255 2.32e+00 1bykA c.93.1.1 35706 1vc1A 110 2.56e+00 c.13.2.1 108493 1wr2A 238 3.88e+00 1z4rA 168 4.12e+00 2bswA 146 5.77e+00 2fg9A 178 5.83e+00 1qstA 160 6.39e+00 1yghA d.108.1.1 40804 2bl1A 172 6.92e+00 1swxA 209 7.15e+00 a.224.1.1 106075 1nv8A 284 7.43e+00 c.66.1.30 86224 1lssA 140 7.45e+00 c.2.1.9 74246 1wjgA 137 8.10e+00 1umkA 275 9.01e+00 1lk9A 448 9.17e+00 c.67.1.1 78057 1q77A 138 9.26e+00 c.26.2.4 96023 1vk1A 242 9.34e+00 d.268.1.2 108634 1q2yA 140 9.64e+00 d.108.1.1 95655 1yvoA 172 1.06e+01 1nksA 194 1.20e+01 1nksA c.37.1.1 31886 1jykA 254 1.21e+01 c.68.1.13 67458 1e8gA 560 1.29e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1wbeA 209 1.33e+01 1yiiA 320 1.56e+01 1an9A 340 1.65e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1rz3A 201 1.67e+01 c.37.1.6 98132 1w1kA 560 1.81e+01 d.58.32.1,d.145.1.1 109059,109060 1odkA 235 1.82e+01 c.56.2.1 86863 1xt8A 292 1.86e+01 1i7pA 274 1.87e+01 b.43.4.2,c.25.1.1 66048,66049 2g1uA 155 1.91e+01 1xypA 190 1.99e+01 1axkA b.29.1.11 24327 1yr0A 175 2.01e+01 1tyyA 339 2.09e+01 1kepA 348 2.10e+01 c.2.1.2 68536 4pfk 319 2.14e+01 3pfk c.89.1.1 35582 1ve9A 347 2.17e+01 c.4.1.2,d.16.1.3 100571,100572 1tfjA 219 2.18e+01 1hs6A 611 2.24e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1aa8A 347 2.40e+01 1an9A 1oc2A 348 2.48e+01 c.2.1.2 92765 2ewcA 126 2.48e+01 1q1gA 276 2.49e+01 c.56.2.1 95574 2byjA 439 2.60e+01 1s6yA 450 2.63e+01 c.2.1.5,d.162.1.2 105314,105315 3thiA 371 2.63e+01 2thiA c.94.1.1 35792 1e5kA 201 2.90e+01 1fr9A c.68.1.8 34578 2plc 274 2.91e+01 2plc c.1.18.2 29614 2bsxA 253 2.99e+01 1ryaA 160 3.06e+01 d.113.1.5 105122 2bv9A 290 3.06e+01 1uwzA 136 3.13e+01 c.97.1.1 108081 1h1dA 221 3.19e+01 c.66.1.1 83452 2bylA 439 3.20e+01 1e79G 272 3.20e+01 1e79G c.49.2.1 33158 1s4nA 348 3.23e+01 c.68.1.16 98501 1qx4A 274 3.35e+01 b.43.4.2,c.25.1.1 104624,104625 2g0qA 173 3.36e+01 1vid 221 3.36e+01 1vid c.66.1.1 34178 1gtkA 313 3.38e+01 c.94.1.1,d.50.2.1 76346,76347 1chuA 540 3.43e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2d4pA 141 3.46e+01 1tiqA 180 3.47e+01 d.108.1.1 107010 1va0A 239 3.52e+01 1wosA 364 3.66e+01 b.44.2.1,d.250.1.1 109468,109469 2bzpA 226 3.79e+01 1eljA 381 3.94e+01 4mbp c.94.1.1 35791 2as0A 396 3.94e+01 2oatA 439 4.03e+01 2dkb c.67.1.4 34452 1u55A 188 4.10e+01 d.278.1.1 107677 1khtA 192 4.19e+01 c.37.1.1 84401 1yx0A 159 4.34e+01 1wviA 257 4.35e+01 1vefA 395 4.37e+01 1ec7A 446 4.43e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1sxjE 354 4.64e+01 a.80.1.1,c.37.1.20 106089,106090 1jtkA 136 4.76e+01 c.97.1.1 71862 1rktA 205 4.85e+01 a.4.1.9,a.121.1.1 97623,97624 1l3iA 192 4.89e+01 c.66.1.22 77676 1yarH 217 4.99e+01 2citA 282 5.09e+01 1tluA 130 5.14e+01 d.156.1.2 107139 1aqcA 172 5.14e+01 1x11A b.55.1.2 26983 1pkp 150 5.24e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1aru 344 5.25e+01 1arv a.93.1.1 18589 2bsaA 303 5.26e+01 1oatA 439 5.28e+01 2dkb c.67.1.4 34461 2bhuA 602 5.37e+01 2bmwA 304 5.44e+01 1vm7A 311 5.49e+01 c.72.1.1 108884 1sqgA 429 5.51e+01 a.79.1.3,c.66.1.38 105912,105913 1w6tA 444 5.77e+01 1wd5A 208 5.83e+01 1lycA 343 5.87e+01 a.93.1.1 74344 1d1qA 161 5.89e+01 1dg9A c.44.1.1 32642 1g3p 217 5.95e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 2a7yA 83 5.98e+01 1rcuA 195 5.99e+01 c.129.1.1 97295 1ukuA 102 6.00e+01 d.58.5.2 99533 1w34A 304 6.02e+01 1que 303 6.03e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1xm7A 195 6.08e+01 2biiA 424 6.13e+01 2cxxA 190 6.14e+01 1r5tA 142 6.14e+01 c.97.1.1 104812 1zk8A 183 6.16e+01 1h6zA 913 6.21e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1f37A 110 6.23e+01 1f37A c.47.1.11 33088 1repC 251 6.23e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ogiA 303 6.28e+01 b.43.4.2,c.25.1.1 92914,92915 1ad2 228 6.30e+01 1ad2 e.24.1.1 43353 1umuA 116 6.31e+01 1umuA b.87.1.1 28382 1l2tA 235 6.32e+01 c.37.1.12 73514 1zxxA 319 6.45e+01 1o97C 264 6.57e+01 c.26.2.3 81232 1muwA 386 6.71e+01 c.1.15.3 79495 1m2xA 223 6.74e+01 d.157.1.1 84764 1lqtA 456 6.76e+01 c.3.1.1,c.4.1.1 74198,74199 2f1wA 158 6.81e+01 1wgkA 114 6.82e+01 1ki9A 192 6.86e+01 c.37.1.1 84404 1uh5A 329 6.97e+01 c.2.1.2 107840 2c4wA 176 7.01e+01 1nstA 325 7.03e+01 1nstA c.37.1.5 31951 1m5q1 130 7.07e+01 2bmfA 451 7.10e+01 2fafA 608 7.12e+01 1sjiA 350 7.13e+01 1yb2A 275 7.15e+01 1ct5A 256 7.16e+01 1ct5A c.1.6.2 28663 3xis 387 7.19e+01 4xis c.1.15.3 29423 1ndh 272 7.22e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1vr7A 142 7.27e+01 1u8zA 168 7.39e+01 1wcgA 464 7.45e+01 1zbfA 142 7.46e+01 1go2A 304 7.47e+01 b.43.4.2,c.25.1.1 76243,76244 1vk8A 106 7.60e+01 d.58.48.1 108636 1fxd 58 7.65e+01 1fxd d.58.1.4 38941 2fiqA 420 7.65e+01 4xis 387 7.73e+01 4xis c.1.15.3 29421 1zczA 464 7.76e+01 2occH 85 7.80e+01 2occH a.51.1.1 17796 1m2dA 110 7.86e+01 c.47.1.11 78476 1un8A 552 7.89e+01 c.119.1.2,a.208.1.1 103806,99661 1qh8B 519 7.97e+01 1qguB c.92.2.3 35634 1yvkA 163 8.02e+01 1kskA 234 8.03e+01 d.66.1.5,d.265.1.3 72920,90389 1on0A 158 8.15e+01 d.108.1.1 87095 1ycoA 279 8.19e+01 1ccwA 137 8.19e+01 1be1 c.23.6.1 31238 1x79A 98 8.31e+01 1zsxA 347 8.33e+01 1yghA 164 8.38e+01 1yghA d.108.1.1 40802 1z08A 170 8.39e+01 2d9rA 104 8.41e+01 1kqpA 271 8.42e+01 c.26.2.1 72883 2aq5A 402 8.51e+01 2evwX 166 8.54e+01 1vls 146 8.55e+01 1vls a.24.2.1 16532 1v54H 85 8.60e+01 a.51.1.1 100329 2gyqA 175 8.67e+01 1jl0A 334 8.68e+01 1jenA d.156.1.1 63155 1xauA 122 8.73e+01 1xo7A 166 8.88e+01 1f8fA 371 8.90e+01 b.35.1.2,c.2.1.1 83246,83247 2b1xA 470 8.93e+01