# List of top-scoring protein chains for T0371.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zjjA 263 6.65e-42 1yv9A 264 1.23e-40 1ys9A 254 4.50e-40 1vjrA 271 1.54e-39 c.108.1.14 100832 1wviA 257 5.88e-39 1ydfA 257 6.93e-39 1pw5A 253 9.78e-39 c.108.1.14 95199 2c4nA 250 3.47e-36 2gfhA 260 8.60e-27 1x42A 232 4.22e-21 2ah5A 210 3.62e-17 1jud 232 4.02e-16 1qq5A c.108.1.1 43325 1zrn 232 5.34e-16 1qq5A c.108.1.1 43323 2go7A 207 3.37e-14 1o08A 221 4.13e-13 c.108.1.6 86525 2fdrA 229 5.22e-13 1aq6A 253 1.72e-12 1qq5A c.108.1.1 43331 1te2A 226 1.79e-12 c.108.1.6 106792 1qq5A 253 2.20e-12 1qq5A c.108.1.1 43327 2fi1A 190 3.26e-12 2b0cA 206 1.15e-11 1qq7A 253 1.37e-11 1qq5A c.108.1.1 43329 1qyiA 384 4.08e-11 c.108.1.13 96595 1rdfA 267 1.75e-09 c.108.1.3 104884 1rqlA 267 2.14e-09 c.108.1.3 97750 1fezA 256 2.17e-09 1fezA c.108.1.3 43343 1swvA 267 1.00e-08 1cr6A 554 1.05e-08 1cr6B c.69.1.11,c.108.1.2 34687,43337 1l7mA 211 2.85e-08 c.108.1.4 73664 1zd3A 555 1.10e-07 1j97A 211 2.14e-07 1f5sA c.108.1.4 62753 1l7pA 211 3.55e-07 c.108.1.4 73670 1wr8A 231 4.34e-06 1rkqA 282 7.56e-05 c.108.1.10 97621 1nnlA 225 3.88e-04 c.108.1.4 85906 1l8lA 225 4.18e-04 c.108.1.4 84562 1nf2A 268 1.38e-03 c.108.1.10 91849 1ymqA 261 1.99e-03 2b8eA 273 4.52e-03 2b30A 301 6.14e-03 2feaA 236 6.18e-03 1k1eA 180 1.12e-02 c.108.1.5 67995 1u7pA 164 1.30e-02 2bdeA 470 1.33e-02 1xviA 275 1.66e-02 1nrwA 288 2.57e-02 c.108.1.10 86128 1rlmA 271 3.03e-02 1yj5A 383 3.46e-02 2g80A 253 8.86e-02 1wzcA 249 1.15e-01 1wpgA 994 1.47e-01 1xbtA 193 2.58e-01 1w4rA 195 2.64e-01 1rloA 271 3.29e-01 1vrdA 494 3.31e-01 1xpjA 126 4.93e-01 2anuA 255 6.97e-01 1z5gA 214 8.16e-01 1zs9A 261 8.22e-01 1z88A 214 8.44e-01 2amyA 246 9.33e-01 1eejA 216 1.10e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 3gbp 307 1.11e+00 1gca c.93.1.1 35661 1gca 309 1.12e+00 1gca c.93.1.1 35659 1jzoA 216 1.13e+00 c.47.1.9,d.17.3.1 84267,84268 1jzdA 220 1.15e+00 c.47.1.9,d.17.3.1 84257,84258 1wy7A 207 1.22e+00 2ctzA 421 1.91e+00 1xx6A 191 2.14e+00 1s2oA 244 2.48e+00 1ylhA 560 2.61e+00 1cfzA 162 2.92e+00 1cfzA c.56.1.1 33754 1xvxA 312 3.36e+00 2g8lA 299 3.54e+00 2gbp 309 3.80e+00 1gca c.93.1.1 35657 1ltqA 301 4.19e+00 c.108.1.9,c.37.1.1 78208,78209 1q7gA 359 4.45e+00 c.2.1.3,d.81.1.2 96038,96039 1ebfA 358 4.45e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 2briA 225 4.93e+00 2bmuA 226 5.01e+00 1orrA 347 5.21e+00 c.2.1.2 93460 2brxA 244 5.55e+00 2g07A 297 5.96e+00 1wv2A 265 5.97e+00 1l6rA 227 6.26e+00 c.108.1.10 77768 1ps6A 328 6.73e+00 c.77.1.3 95070 1ptmA 329 6.74e+00 c.77.1.3 95104 2fueA 262 6.98e+00 2b20A 403 7.28e+00 2g09A 297 7.31e+00 1jk0B 345 7.38e+00 a.25.1.2 63143 2b82A 211 7.50e+00 1rmtA 212 7.66e+00 1ly1A 181 7.83e+00 c.37.1.1 74334 1hg3A 225 7.84e+00 1hg3A c.1.1.1 61025 1gs5A 258 8.16e+00 c.73.1.2 70395 1r8kA 329 9.44e+00 c.77.1.3 97240 2a74A 643 1.01e+01 1sjpA 504 1.01e+01 1r7mA 235 1.04e+01 1xi9A 406 1.13e+01 1kvs 338 1.22e+01 1xel c.2.1.2 29799 1kvu 338 1.27e+01 1xel c.2.1.2 29794 1kvt 338 1.28e+01 1xel c.2.1.2 29798 1q3kA 259 1.30e+01 c.125.1.1 95693 1udc 338 1.32e+01 1xel c.2.1.2 29785 1a9y 338 1.35e+01 1xel c.2.1.2 29789 1qw0A 309 1.36e+01 c.94.1.1 96455 1kvr 338 1.43e+01 1xel c.2.1.2 29793 1udb 338 1.44e+01 1xel c.2.1.2 29787 1lrkA 338 1.46e+01 c.2.1.2 74225 1a9z 338 1.47e+01 1xel c.2.1.2 29795 1pdiA 278 1.47e+01 i.19.1.1 94536 1vyhC 410 1.47e+01 2iv2X 715 1.48e+01 1dglA 237 1.49e+01 1nls b.29.1.1 24133 1e08A 371 1.49e+01 i.4.1.1 45914 2b94A 267 1.54e+01 1kvq 338 1.55e+01 1xel c.2.1.2 29797 1wyuA 438 1.58e+01 2ffeA 311 1.68e+01 1lrtA 376 1.70e+01 c.1.5.1 84685 1zyqA 698 1.75e+01 1jr6A 142 1.80e+01 c.37.1.14 71821 1x9mA 698 1.81e+01 1ocyA 198 1.84e+01 d.231.1.1 86817 1kijA 390 1.87e+01 d.14.1.3,d.122.1.2 72514,72515 2gshA 414 1.88e+01 1ma3A 253 1.92e+01 c.31.1.5 78883 1hfeL 421 2.00e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1pvnA 376 2.00e+01 c.1.5.1 88312 1ecfA 504 2.01e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1q92A 197 2.06e+01 c.108.1.8 96250 1nr6A 473 2.07e+01 a.104.1.1 92085 1v7zA 260 2.11e+01 c.125.1.1 100488 1h9wA 237 2.15e+01 1nls b.29.1.1 60853 1rkuA 206 2.19e+01 c.108.1.11 97627 1sqgA 429 2.20e+01 a.79.1.3,c.66.1.38 105912,105913 1mrp 309 2.21e+01 1mrp c.94.1.1 35796 1hdgO 332 2.24e+01 1dssG c.2.1.3,d.81.1.1 29990,39905 1kbvA 327 2.34e+01 b.6.1.3,b.6.1.3 68395,68396 2d5cA 263 2.34e+01 2mev2 256 2.38e+01 1aym2 1ve1A 304 2.38e+01 1alkA 449 2.39e+01 1b8jA c.76.1.1 34994 1c3uA 431 2.40e+01 1c3cA a.127.1.1 19427 1r6vA 671 2.40e+01 1h9pA 237 2.42e+01 1nls b.29.1.1 60838 1mvqA 236 2.47e+01 b.29.1.1 91473 1c3cA 429 2.50e+01 1c3cA a.127.1.1 19425 1zo1I 501 2.56e+01 1q7zA 566 2.58e+01 c.1.21.2,c.1.26.1 96090,96091 1nnfA 309 2.67e+01 c.94.1.1 85903 1qvsA 309 2.81e+01 c.94.1.1 96441 1zzhA 328 2.83e+01 1sauA 115 2.89e+01 2a5yB 549 2.89e+01 1ja9A 274 2.90e+01 c.2.1.2 62817 1x7gA 261 2.92e+01 1rgvA 80 2.94e+01 d.58.1.1 97454 1op2A 234 2.96e+01 b.47.1.2 104020 1w4zA 281 2.98e+01 1o4wA 147 3.09e+01 c.120.1.1 86629 2aamA 309 3.11e+01 1irzA 64 3.18e+01 a.4.1.11 76772 1p6bA 336 3.24e+01 c.1.9.3 94163 1bf5A 575 3.29e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2pspA 106 3.31e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1xvyA 309 3.33e+01 1pcp 106 3.34e+01 2pspA g.16.1.1,g.16.1.1 44742,44743 2dkaA 544 3.35e+01 1op0A 234 3.45e+01 b.47.1.2 104019 1qba 858 3.46e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21810,22406,29009,40408 1smqA 399 3.50e+01 a.25.1.2 105766 1jk0A 419 3.52e+01 a.25.1.2 63142 1gcuA 295 3.53e+01 1gcuA c.2.1.3,d.81.1.4 30063,39978 1lc0A 294 3.56e+01 c.2.1.3,d.81.1.4 73823,73824 1yeyA 444 3.56e+01 1kjs 74 3.56e+01 1kjs a.50.1.1 17792 1jq5A 370 3.57e+01 e.22.1.2 67084 1ybvA 283 3.59e+01 1ybvA c.2.1.2 29948 1g0oA 283 3.59e+01 1ybvA c.2.1.2 60181 2g2cA 167 3.70e+01 1v4vA 376 3.71e+01 c.87.1.3 100313 1z4eA 153 3.75e+01 1c7sA 858 4.02e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1lngA 87 4.09e+01 d.201.1.1 74045 1xrhA 351 4.11e+01 1jv0A 260 4.18e+01 b.74.1.1 63303 1xmpA 170 4.23e+01 1l9aA 87 4.28e+01 d.201.1.1 73710 1kh7A 449 4.29e+01 c.76.1.1 72477 1tjyA 316 4.40e+01 c.93.1.1 107062 1khjA 449 4.45e+01 c.76.1.1 72481 1s1iB 253 4.45e+01 i.1.1.1 105176 1kh5A 449 4.47e+01 c.76.1.1 72475 1d6iA 388 4.48e+01 1bi5A c.95.1.2,c.95.1.2 36001,36002 1ajaA 449 4.65e+01 1b8jA c.76.1.1 35010 1c7tA 858 4.69e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21813,22409,29012,40411 2fd4A 122 4.84e+01 2aciA 418 4.84e+01 1jykA 254 4.87e+01 c.68.1.13 67458 2d3pA 236 4.91e+01 2d87A 128 4.99e+01 1zfjA 491 5.08e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1nsqA 153 5.10e+01 1npk d.58.6.1 39135 1b74A 254 5.11e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1y88A 199 5.16e+01 1ub3A 220 5.20e+01 c.1.10.1 88395 1gqpA 221 5.20e+01 b.18.1.9 70372 1yvlA 683 5.21e+01 1u0vA 393 5.22e+01 1yf3A 259 5.23e+01 1xr4A 509 5.25e+01 1dctA 324 5.29e+01 6mhtA c.66.1.26 34244 1xqwA 293 5.29e+01 1vbuA 328 5.29e+01 1ff9A 450 5.35e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2foyA 260 5.41e+01 1crm 260 5.42e+01 2cba b.74.1.1 27816 2cab 261 5.43e+01 2cba b.74.1.1 27906 1qlmA 316 5.44e+01 1qlmA d.147.1.1 41765 1un7A 400 5.44e+01 b.92.1.5,c.1.9.10 99657,99658 1xkfA 133 5.45e+01 1fnhA 271 5.48e+01 1fnhA b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1zpuA 534 5.49e+01 1y5hA 133 5.54e+01 1nbaA 264 5.55e+01 1nbaA c.33.1.3 31753 1bc5A 269 5.65e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1vdmA 153 5.71e+01 1af7 274 5.72e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1xr6A 460 5.75e+01 1ybaA 410 5.80e+01 1tk9A 188 5.84e+01 c.80.1.3 107082 1y7aA 449 5.86e+01 1xzpA 482 5.86e+01 1xrlA 293 5.87e+01 1b3qA 379 5.89e+01 1b3qA a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 2anhA 446 5.91e+01 1b8jA c.76.1.1 35004 1y6vA 449 5.91e+01 1uraA 446 5.92e+01 1b8jA c.76.1.1 35002 1elzA 449 5.95e+01 1b8jA c.76.1.1 35022 1anjA 446 6.02e+01 1b8jA c.76.1.1 35008 1aniA 446 6.03e+01 1b8jA c.76.1.1 35018 2cs4A 95 6.03e+01 1elyA 449 6.04e+01 1b8jA c.76.1.1 35028 1elxA 449 6.05e+01 1b8jA c.76.1.1 35026 1xroA 293 6.05e+01 1o9hA 250 6.08e+01 c.66.1.29 86693 2esnA 310 6.11e+01 1p4sA 181 6.13e+01 c.37.1.1 94117 1psdA 409 6.15e+01 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2cf2E 226 6.16e+01 1g9tA 182 6.19e+01 c.61.1.1 70166 2gsfA 373 6.25e+01 1kktA 511 6.31e+01 a.102.2.1 68687 1hqaA 449 6.31e+01 1b8jA c.76.1.1 34998 1o6bA 169 6.37e+01 c.26.1.3 92564 1n4aA 252 6.37e+01 c.92.2.2 85317 1o17A 345 6.37e+01 a.46.2.1,c.27.1.1 80765,80766 1wp9A 494 6.38e+01 1v71A 323 6.38e+01 7timA 247 6.41e+01 1amk c.1.1.1 28457 1hroA 106 6.46e+01 1ycc a.3.1.1 15897 1b4aA 149 6.47e+01 1b4aA a.4.5.3,d.74.2.1 16088,39721 1hjkA 449 6.49e+01 1b8jA c.76.1.1 35006 1aliA 449 6.52e+01 1b8jA c.76.1.1 34996 2cn1A 292 6.57e+01 1id1A 153 6.57e+01 1id1A c.2.1.9 62286 3ypiA 247 6.57e+01 1amk c.1.1.1 28463 1xrrA 293 6.61e+01 1a5iA 265 6.62e+01 5ptp b.47.1.2 26331 1xqvA 293 6.67e+01 1mtzA 293 6.71e+01 c.69.1.7 79467 1yqdA 366 6.74e+01 1ye8A 178 6.80e+01 1vpqA 273 6.86e+01 2cdnA 201 6.93e+01 1yfjA 259 6.93e+01 1wqaA 455 7.06e+01 2bgiA 272 7.07e+01 1sk1A 140 7.08e+01 1qxnA 137 7.10e+01 c.46.1.3 96537 1ztcA 221 7.12e+01 1sjdA 368 7.12e+01 c.1.11.2,d.54.1.1 105632,105633 1ohtA 215 7.43e+01 d.118.1.1 87036 2ab1A 122 7.47e+01 1n82A 331 7.54e+01 c.1.8.3 91703 1h6fA 193 7.54e+01 b.2.5.4 70901 1vpe 398 7.60e+01 16pk c.86.1.1 35453 1kqzA 273 7.62e+01 c.1.8.5 68844 2cu0A 486 7.63e+01 1t9zA 197 7.67e+01 c.108.1.16 106728 1r46A 398 7.70e+01 b.71.1.1,c.1.8.1 96973,96974 1txgA 335 7.70e+01 1os5A 576 7.72e+01 e.8.1.4 93475 1o9gA 250 7.73e+01 c.66.1.29 86692 1kr1A 273 7.74e+01 c.1.8.5 68846 1j9bA 141 7.79e+01 c.47.1.12 66459 1heiA 451 7.82e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1jzwA 140 7.87e+01 c.47.1.12 67883 1zmrA 387 7.89e+01 2c30A 321 7.91e+01 1x10A 208 7.97e+01 1exzA 141 7.97e+01 1exzA a.26.1.2 16877 1i45A 248 7.99e+01 1amk c.1.1.1 61665 1ja1A 622 8.09e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1sd8A 141 8.13e+01 1vcnA 550 8.19e+01 c.23.16.1,c.37.1.10 108506,108507 1neyA 247 8.21e+01 c.1.1.1 80449 1wlsA 328 8.28e+01 2fj0A 551 8.35e+01 1x12A 208 8.36e+01 1c2pA 576 8.42e+01 1quvA e.8.1.4 43117 1z8xA 208 8.43e+01 1z8tA 208 8.44e+01 1ex4A 239 8.45e+01 1b9dA b.34.7.1,c.55.3.2 24627,33670 1ioiA 208 8.45e+01 1a2zA c.56.4.1 62629 1ojqA 212 8.47e+01 d.166.1.1 93146 1z8wA 208 8.59e+01 1v02E 565 8.68e+01 c.1.8.4 108198 1kr0A 273 8.75e+01 c.1.8.5 68845 1wekA 217 8.82e+01 1nekB 238 8.84e+01 a.1.2.1,d.15.4.2 80429,80430 1oh4A 179 8.97e+01 b.18.1.18 92978