# List of top-scoring protein chains for T0371.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zjjA 263 1.00e-30 1yv9A 264 1.85e-29 1ys9A 254 6.55e-29 1ydfA 257 1.29e-28 1wviA 257 1.32e-28 1vjrA 271 2.16e-28 c.108.1.14 100832 1pw5A 253 7.00e-28 c.108.1.14 95199 2c4nA 250 8.78e-25 1rkqA 282 9.26e-25 c.108.1.10 97621 1nrwA 288 2.57e-22 c.108.1.10 86128 2gfhA 260 5.77e-22 2fdrA 229 4.55e-21 2ah5A 210 1.83e-20 1ymqA 261 8.15e-20 1x42A 232 8.15e-20 1te2A 226 9.85e-20 c.108.1.6 106792 1nf2A 268 1.62e-19 c.108.1.10 91849 1zrn 232 9.44e-19 1qq5A c.108.1.1 43323 1jud 232 9.93e-19 1qq5A c.108.1.1 43325 1o08A 221 5.83e-18 c.108.1.6 86525 2go7A 207 7.94e-16 1aq6A 253 1.19e-15 1qq5A c.108.1.1 43331 1qq5A 253 2.06e-15 1qq5A c.108.1.1 43327 1qq7A 253 9.75e-15 1qq5A c.108.1.1 43329 1rlmA 271 2.52e-14 2b30A 301 5.55e-14 1rloA 271 1.26e-13 1wr8A 231 2.95e-13 1l7mA 211 4.10e-13 c.108.1.4 73664 1j97A 211 1.96e-12 1f5sA c.108.1.4 62753 1l7pA 211 2.33e-12 c.108.1.4 73670 2fi1A 190 2.93e-12 1rqlA 267 3.35e-12 c.108.1.3 97750 1rdfA 267 8.15e-12 c.108.1.3 104884 1fezA 256 1.18e-11 1fezA c.108.1.3 43343 1qyiA 384 3.30e-11 c.108.1.13 96595 1swvA 267 4.45e-11 2b0cA 206 4.90e-11 1xviA 275 3.41e-09 1zd3A 555 1.59e-08 1l6rA 227 3.57e-08 c.108.1.10 77768 1cr6A 554 3.60e-08 1cr6B c.69.1.11,c.108.1.2 34687,43337 1s2oA 244 5.10e-07 1wzcA 249 3.39e-06 2b8eA 273 6.38e-06 1l8lA 225 8.43e-06 c.108.1.4 84562 1nnlA 225 8.51e-06 c.108.1.4 85906 1u7pA 164 2.28e-04 2bdeA 470 2.48e-04 2amyA 246 8.18e-04 2feaA 236 1.04e-03 1k1eA 180 1.66e-03 c.108.1.5 67995 1yj5A 383 2.77e-03 1rkuA 206 4.44e-03 c.108.1.11 97627 1z88A 214 2.46e-02 1z5gA 214 2.80e-02 2fueA 262 2.97e-02 1zs9A 261 3.60e-02 2g80A 253 3.70e-02 1u02A 239 7.78e-02 c.108.1.15 107538 1rmtA 212 9.48e-02 2b82A 211 9.63e-02 1xpjA 126 1.34e-01 1wpgA 994 1.58e-01 1wv2A 265 2.67e-01 1y8aA 332 4.67e-01 1pz1A 333 1.05e+00 c.1.7.1 95390 1zo1I 501 1.18e+00 1hg3A 225 1.19e+00 1hg3A c.1.1.1 61025 2g07A 297 1.21e+00 2g09A 297 1.22e+00 2brxA 244 1.37e+00 1v71A 323 1.41e+00 2bmuA 226 1.71e+00 1gs5A 258 1.71e+00 c.73.1.2 70395 2briA 225 1.73e+00 2anuA 255 2.13e+00 1im5A 180 4.36e+00 c.33.1.3 66211 1q92A 197 4.52e+00 c.108.1.8 96250 1vlpA 441 4.88e+00 d.41.2.2,d.41.2.3 108840,108841 1zxoA 291 4.94e+00 1vpe 398 5.50e+00 16pk c.86.1.1 35453 1j3nA 408 5.63e+00 c.95.1.1,c.95.1.1 84074,84075 1oc2A 348 5.76e+00 c.2.1.2 92765 1xbtA 193 6.06e+00 1w4rA 195 6.90e+00 1wcwA 261 6.94e+00 1wcxA 261 7.06e+00 1ltqA 301 7.18e+00 c.108.1.9,c.37.1.1 78208,78209 1tk9A 188 7.43e+00 c.80.1.3 107082 1zorA 399 7.44e+00 2cn1A 292 7.47e+00 1xq6A 253 7.55e+00 1bf6A 291 7.91e+00 1pscA c.1.9.3 29065 1konA 249 7.99e+00 e.39.1.1 72823 2avnA 260 8.41e+00 1hgxA 183 8.42e+00 1tc1A c.61.1.1 34027 1uekA 275 9.19e+00 d.14.1.5,d.58.26.5 88483,88484 2fliA 220 9.58e+00 1b35A 260 1.01e+01 1b35A b.121.4.1 23333 1tjyA 316 1.11e+01 c.93.1.1 107062 1zuwA 272 1.24e+01 1l0wA 580 1.29e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2d5cA 263 1.35e+01 1smqA 399 1.36e+01 a.25.1.2 105766 1jk0A 419 1.44e+01 a.25.1.2 63142 1g5tA 196 1.46e+01 1g5rA c.37.1.11 32366 1vp8A 201 1.46e+01 2fbiA 142 1.51e+01 1yixA 265 1.63e+01 1i2qA 316 1.65e+01 1onrA c.1.10.1 61578 1m41A 380 1.66e+01 c.1.16.4 78595 1nqkA 381 1.66e+01 c.1.16.4 92050 2bkxA 242 1.83e+01 1kmiZ 214 1.84e+01 h.4.11.1 72752 1ptmA 329 1.84e+01 c.77.1.3 95104 1ps6A 328 1.84e+01 c.77.1.3 95070 1q7hA 153 1.96e+01 b.122.1.1,d.17.6.2 96042,96043 1i2rA 316 1.98e+01 1onrA c.1.10.1 61580 1rymA 212 1.99e+01 c.56.3.1 98106 1tkjA 284 2.02e+01 2cvhA 220 2.11e+01 1i2oA 316 2.12e+01 1onrA c.1.10.1 61574 1ly1A 181 2.14e+01 c.37.1.1 74334 1a8l 226 2.16e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1i2pA 316 2.17e+01 1onrA c.1.10.1 61576 1x13A 401 2.24e+01 1onrA 316 2.24e+01 1onrA c.1.10.1 29169 1ucwA 317 2.26e+01 1onrA c.1.10.1 29171 1gveB 327 2.26e+01 c.1.7.1 70598 1gveA 327 2.28e+01 c.1.7.1 70597 1v8gA 329 2.29e+01 a.46.2.1,c.27.1.1 100505,100506 1i2nA 316 2.31e+01 1onrA c.1.10.1 61572 1ztpA 251 2.33e+01 1rynA 202 2.36e+01 c.56.3.1 98107 1x3lA 440 2.41e+01 1lf1A 308 2.42e+01 c.1.8.3 73877 1fmjA 351 2.55e+01 c.37.1.5 59879 2bgsA 344 2.60e+01 2bisA 440 2.61e+01 1v4vA 376 2.63e+01 c.87.1.3 100313 1q3qA 548 2.65e+01 a.129.1.2,c.8.5.2,d.56.1.2 95704,95705,95706 1gpjA 404 2.68e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1l5wA 796 2.69e+01 c.87.1.4 73605 1qm5A 796 2.75e+01 1a8i c.87.1.4 35542 1q3rA 548 2.90e+01 a.129.1.2,c.8.5.2,d.56.1.2 95716,95717,95718 1xm6A 398 2.90e+01 1tb5A 381 2.90e+01 a.211.1.2 106735 1evyA 366 2.96e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1r6xA 395 3.02e+01 b.122.1.3,c.26.1.5 97167,97168 1xuuA 349 3.04e+01 1sqiA 393 3.08e+01 d.32.1.3,d.32.1.3 105914,105915 1sozA 314 3.11e+01 b.36.1.4,b.47.1.1 105859,105860 1a3h 300 3.12e+01 7a3hA c.1.8.3 28819 1jjfA 268 3.13e+01 c.69.1.2 66765 1sotA 320 3.16e+01 b.36.1.4,b.47.1.1 105852,105853 7a3hA 303 3.19e+01 7a3hA c.1.8.3 28817 1lrkA 338 3.19e+01 c.2.1.2 74225 1qi2A 305 3.22e+01 7a3hA c.1.8.3 28824 1uok 558 3.22e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1v2xA 194 3.23e+01 c.116.1.1 100274 1r8kA 329 3.23e+01 c.77.1.3 97240 1h5vA 304 3.24e+01 c.1.8.3 70898 1i3kA 348 3.25e+01 1xel c.2.1.2 61595 1jt2A 268 3.26e+01 c.69.1.2 71858 1j96A 323 3.33e+01 c.1.7.1 71616 1ihiA 323 3.35e+01 c.1.7.1 66142 1pyfA 312 3.36e+01 c.1.7.1 95334 1a9y 338 3.36e+01 1xel c.2.1.2 29789 1qw0A 309 3.36e+01 c.94.1.1 96455 1hzjA 348 3.40e+01 1xel c.2.1.2 61450 1vyhC 410 3.40e+01 1ek6A 348 3.40e+01 1xel c.2.1.2 29800 1xn4A 192 3.41e+01 1xjbA 325 3.45e+01 1kvu 338 3.46e+01 1xel c.2.1.2 29794 1kvr 338 3.49e+01 1xel c.2.1.2 29793 1n7kA 234 3.51e+01 c.1.10.1 85374 1kvs 338 3.52e+01 1xel c.2.1.2 29799 1kvt 338 3.53e+01 1xel c.2.1.2 29798 1a9z 338 3.57e+01 1xel c.2.1.2 29795 1mjiA 182 3.60e+01 d.77.1.1 79208 1udc 338 3.64e+01 1xel c.2.1.2 29785 1l7bA 92 3.64e+01 c.15.1.2 91053 1mrp 309 3.66e+01 1mrp c.94.1.1 35796 1kvq 338 3.67e+01 1xel c.2.1.2 29797 1t3hA 214 3.68e+01 c.37.1.1 99117 1n3bA 216 3.69e+01 c.37.1.1 79959 1t82A 155 3.69e+01 d.38.1.5 106639 1sur 215 3.70e+01 1sur c.26.2.2 31620 1lfpA 249 3.73e+01 e.39.1.1 73885 1xx6A 191 3.76e+01 1udb 338 3.79e+01 1xel c.2.1.2 29787 1sauA 115 3.79e+01 1ww8A 439 3.84e+01 1tygA 253 3.87e+01 c.1.31.1 107454 1xm3A 264 3.89e+01 1uzdC 134 3.90e+01 3pgmA 244 3.91e+01 1vgaA 248 3.94e+01 2f02A 323 4.00e+01 1cs0A 1073 4.06e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1seiA 130 4.12e+01 1seiA d.140.1.1 41463 1epuA 591 4.15e+01 1dn1A e.25.1.1 43358 1iirA 415 4.22e+01 1iirA c.87.1.5 62453 1vhtA 218 4.24e+01 c.37.1.1 100700 1g0dA 695 4.28e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2ce3A 200 4.31e+01 1o5xA 248 4.34e+01 c.1.1.1 92528 1o1zA 234 4.36e+01 c.1.18.3 86555 1nnhA 294 4.37e+01 d.104.1.1 92005 1z4mA 197 4.41e+01 1x10A 208 4.46e+01 1miwA 404 4.50e+01 a.173.1.1,d.218.1.4 79162,79163 2cbyA 208 4.52e+01 1bap 306 4.56e+01 8abp c.93.1.1 35654 2g5cA 281 4.61e+01 1aorA 605 4.62e+01 1b25A a.110.1.1,d.152.1.1 19042,41794 1h32B 138 4.70e+01 a.3.1.1 76620 1s8nA 205 4.73e+01 c.23.1.1 105374 1gerA 450 4.79e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170 2gdnA 267 4.80e+01 2cunA 410 4.82e+01 1vorG 178 4.83e+01 1p9rA 418 4.83e+01 c.37.1.11 94399 1fnhA 271 4.84e+01 1fnhA b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1x12A 208 4.84e+01 1z8xA 208 4.98e+01 1wvfA 520 5.01e+01 1su8A 636 5.02e+01 e.26.1.2 98999 1nkwD 180 5.07e+01 i.1.1.2 80589 1diiA 521 5.08e+01 1qltA d.58.32.1,d.145.1.1 39481,41744 1hskA 326 5.11e+01 2mbr d.145.1.2,d.146.1.1 61241,61242 1z8wA 208 5.18e+01 1k7dA 209 5.25e+01 d.153.1.2 90946 1jul 248 5.32e+01 1a53 c.1.2.4 28566 1gm9A 209 5.41e+01 d.153.1.2 65304 1a5iA 265 5.41e+01 5ptp b.47.1.2 26331 1nnfA 309 5.48e+01 c.94.1.1 85903 2bkcA 156 5.48e+01 1gm7A 209 5.50e+01 d.153.1.2 65302 1xrlA 293 5.56e+01 1ioiA 208 5.57e+01 1a2zA c.56.4.1 62629 1a53 247 5.59e+01 1a53 c.1.2.4 28564 2cvjA 180 5.60e+01 1q6uA 245 5.61e+01 d.26.1.1 95998 1kecA 209 5.62e+01 d.153.1.2 90957 1z8tA 208 5.65e+01 5pgmA 246 5.79e+01 1qhfA c.60.1.1 33962 1xknA 355 5.86e+01 1qhfA 240 5.87e+01 1qhfA c.60.1.1 33960 1gk9A 260 5.91e+01 d.153.1.2 65246 1tqjA 230 5.98e+01 c.1.2.2 107228 2clpA 347 6.00e+01 1a4sA 503 6.01e+01 1bpwA c.82.1.1 35361 1qvsA 309 6.07e+01 c.94.1.1 96441 1xhcA 367 6.14e+01 1iofA 208 6.19e+01 1a2zA c.56.4.1 62625 1ssmA 242 6.25e+01 b.81.1.6 105987 1nezA 274 6.27e+01 b.1.1.2,d.19.1.1 85589,85590 1zt2B 212 6.29e+01 1tkbA 678 6.32e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31807,31808,33092 1f9nA 149 6.33e+01 a.4.5.3,d.74.2.1 64990,64991 1gpuA 680 6.33e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1glv 303 6.38e+01 1gsa c.30.1.3,d.142.1.1 31721,41480 1nb2A 150 6.40e+01 d.58.6.1 85508 1ay0A 680 6.42e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 1w78A 422 6.53e+01 1x7oA 287 6.58e+01 1xd8A 289 6.64e+01 1xdwA 331 6.71e+01 1rybA 212 6.74e+01 c.56.3.1 98098 2ecpA 796 6.75e+01 1a8i c.87.1.4 35546 1gkuB 1054 6.76e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 1dlaA 314 6.78e+01 1frb c.1.7.1 28690 1s70B 299 6.82e+01 d.211.1.1 105317 1ynpA 317 6.83e+01 1ah4 315 6.86e+01 1frb c.1.7.1 28684 1ahpA 797 6.88e+01 1a8i c.87.1.4 35544 1jf5A 585 6.88e+01 b.1.18.2,b.71.1.1,c.1.8.1 71644,71645,71646 1ah0 316 6.94e+01 1frb c.1.7.1 28685 1vl6A 388 7.07e+01 c.2.1.7,c.58.1.3 108724,108725 1iugA 352 7.12e+01 c.67.1.3 90699 2ffeA 311 7.12e+01 1gsa 316 7.15e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1ocp 67 7.24e+01 1au7A a.4.1.1 15999 1efuA 385 7.36e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1nm5A 384 7.39e+01 c.2.1.4,c.23.12.2 91968,91969 1l5zA 155 7.42e+01 c.23.1.1 77722 1fnoA 417 7.50e+01 d.58.19.1,c.56.5.4 70145,75841 1efcA 393 7.52e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1ob2A 393 7.52e+01 b.43.3.1,b.44.1.1,c.37.1.8 103900,103901,103902 1xdbA 289 7.53e+01 1dg1G 394 7.53e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25684,25724,32117 1de0A 289 7.56e+01 1cp2A c.37.1.10 32255 2afhE 289 7.57e+01 1y4tA 322 7.64e+01 2fr8A 384 7.70e+01 1sstA 267 7.71e+01 b.81.1.6 105995 2c8vA 288 7.74e+01 1xqvA 293 7.75e+01 1xf9A 283 7.75e+01 1uw4B 248 7.84e+01 a.118.1.14 100072 1xfaA 283 7.85e+01 1ssqA 267 7.87e+01 b.81.1.6 105993 1xrrA 293 7.87e+01 2bjyA 156 7.87e+01 1uzhC 122 7.89e+01 1d8tA 393 7.93e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25686,25726,32119 1dp4A 435 7.94e+01 1dp4A c.93.1.1 35710 1l2lA 457 7.94e+01 c.72.1.3 77656 1g20E 289 7.99e+01 1cp2A c.37.1.10 32247 2gcaA 428 7.99e+01 1oh4A 179 8.00e+01 b.18.1.18 92978 1mrqA 323 8.13e+01 c.1.7.1 91445 1r0wA 286 8.16e+01 c.37.1.12 96754 1ptjA 381 8.24e+01 c.2.1.4,c.23.12.2 95099,95100 1j0hA 588 8.35e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1cp2A 269 8.37e+01 1cp2A c.37.1.10 32269 1efm 393 8.43e+01 1efcA c.37.1.8 64732 1vpqA 273 8.44e+01 2fheA 216 8.53e+01 1b8xA a.45.1.1,c.47.1.5 17724,33018 1l7dA 384 8.56e+01 c.2.1.4,c.23.12.2 77774,77775 1j0jA 588 8.63e+01 b.1.18.2,b.71.1.1,c.1.8.1 77039,77040,77041 1mtzA 293 8.63e+01 c.69.1.7 79467 1y6hA 177 8.67e+01 1vkyA 347 8.79e+01 e.53.1.1 108696 2dayA 128 8.81e+01 1s80A 278 8.81e+01 b.81.1.6 105358 1njgA 250 8.84e+01 c.37.1.20 85785 1jciA 294 8.85e+01 a.93.1.1 71632 1i19A 561 8.86e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1pca 403 8.89e+01 1aye c.56.5.1,d.58.3.1 33822,39063 1etu 394 8.97e+01 1efcA c.37.1.8 64737 1te0A 318 8.97e+01