CreatePredAlphaCost pred_alpha2k alpha11 T0370.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0370.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0370.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 25 dry6.5 30 dry8 25 dry12 15 \ phobic_fit 4 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 50 backbone_clashes 2 \ break 100 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 3 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 20 \ hbond_geom_beta_pair 50 \ missing_atoms 1 # from decoys/try44-opt2.helices HelixConstraint T3 D23 1 HelixConstraint S60 T69 1 HelixConstraint G100 T109 1 HelixConstraint N137 D154 1 # from decoys/try44-opt2.sheets SheetConstraint A26 A33 S44 A37 hbond W27 1 SheetConstraint W27 A31 I76 V72 hbond V28 1 SheetConstraint Y45 D48 V54 T51 hbond L46 1 SheetConstraint T51 A58 S126 S119 hbond F52 1 SheetConstraint G70 I76 A89 V83 hbond V72 1 SheetConstraint R80 G87 E135 R128 hbond L82 1 SheetConstraint E86 L92 R128 Y122 hbond L90 1