# List of top-scoring protein chains for T0370.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rfeA 162 1.55e-12 2asfA 137 9.09e-11 2fg9A 178 8.01e-09 2aq6A 147 1.40e-08 2fhqA 141 2.82e-07 2furA 209 2.62e-06 1dnlA 199 7.92e-06 1ci0A b.45.1.1 25753 1g79A 218 8.25e-06 1ci0A b.45.1.1 25752 1t9mA 214 7.61e-05 1w3oA 216 1.73e-03 1ty9A 222 2.34e-03 1nrgA 261 2.51e-03 b.45.1.1 80694 1vl7A 157 4.42e-03 b.45.1.1 108732 2arzA 247 6.96e-03 1wllA 122 1.52e-02 1wlkA 122 1.52e-02 1flmA 122 1.52e-02 1axj b.45.1.1 25747 1wliA 122 1.52e-02 1ejeA 192 7.98e-02 1ejeA b.45.1.2 25757 1wvbA 322 5.75e-01 2aebA 322 5.78e-01 2a2jA 246 6.30e-01 2d7mA 115 1.13e+00 1ci0A 228 1.33e+00 1ci0A b.45.1.1 25750 1pvtA 238 1.70e+00 c.74.1.1 95189 1qo6A 101 5.23e+00 g.14.1.2,g.27.1.1 44673,44954 1fobA 334 5.49e+00 c.1.8.3 83255 1z7hA 447 5.74e+00 1yvgA 468 5.88e+00 1yknB 238 6.88e+00 1e88A 160 8.46e+00 g.14.1.2,g.14.1.2,g.27.1.1 44669,44670,44950 3pcgM 238 1.03e+01 3pchM b.3.6.1 22742 1cmxA 236 1.06e+01 1uch d.3.1.6 37130 1fp3A 402 1.09e+01 1fp3A a.102.1.3 18842 3pcdM 238 1.18e+01 3pchM b.3.6.1 22778 1tuaA 191 1.36e+01 d.51.1.1,d.51.1.1 107321,107322 1fr1A 361 1.47e+01 1gceA e.3.1.1 42734 1ykpB 238 1.54e+01 1al3 324 1.66e+01 1al3 c.94.1.1 35835 2fo3A 125 1.76e+01 2fsqA 243 1.80e+01 2d93A 134 1.80e+01 1nk2P 77 1.86e+01 1akhB a.4.1.1 16015 1rgyA 360 1.89e+01 e.3.1.1 97456 1ykkB 238 1.93e+01 1qryA 80 1.96e+01 2hddA a.4.1.1 16016 1zatA 250 1.98e+01 1iqdC 156 2.28e+01 1cztA b.18.1.2 62648 1d7pM 159 2.29e+01 1cztA b.18.1.2 23718 1ob8A 135 2.33e+01 1nekB 238 2.34e+01 a.1.2.1,d.15.4.2 80429,80430 1q5rH 294 2.70e+01 d.153.1.4 95925 1xrhA 351 2.77e+01 1zc2A 361 2.78e+01 2cohA 202 3.22e+01 1zp6A 191 3.63e+01 1fjgK 129 3.78e+01 1fjfK c.55.4.1 33733 1j7mA 72 3.79e+01 1e8bA g.14.1.2 62699 1q9jA 422 3.79e+01 c.43.1.2,c.43.1.2 104590,104591 1i94K 128 3.82e+01 1fjfK c.55.4.1 62002 2fvgA 340 3.84e+01 1zx8A 136 3.85e+01 2cquA 116 3.91e+01 1xhnA 184 3.91e+01 1pbuA 162 3.95e+01 d.58.46.1 88030 1r2uA 89 4.08e+01 a.39.1.5 104783 1v0jA 399 4.11e+01 1izdA 323 4.11e+01 b.50.1.2 83839 2bw2A 140 4.35e+01 1x4gA 109 4.47e+01 1fybA 111 4.58e+01 4sgbI g.69.1.1,g.69.1.1 44726,44727 1p3y1 194 4.64e+01 1kmjA 406 4.83e+01 c.67.1.3 68695 1ovxA 67 4.84e+01 g.39.1.11 93622 1jf9A 408 4.84e+01 1c0nA c.67.1.3 62931 1h54A 754 4.86e+01 a.102.1.4,b.30.5.3 60634,60635 1kmkA 406 4.88e+01 c.67.1.3 68696 1r3hA 260 4.93e+01 b.1.1.2,d.19.1.1 96911,96912 1ap4 89 4.99e+01 1ncx a.39.1.5 17253 1ko3A 230 5.03e+01 d.157.1.1 90974 1uizA 115 5.11e+01 d.80.1.3 107884 2ey4A 333 5.43e+01 1qczA 169 5.47e+01 1qczA c.23.8.1 31276 1zrtD 258 5.52e+01 1wh0A 134 5.61e+01 1ar72 272 5.65e+01 1aym2 1aquA 297 5.71e+01 1aquA c.37.1.5 31942 2bsxA 253 5.84e+01 2greA 349 5.91e+01 1sq6A 253 5.98e+01 c.56.2.1 98964 1y3hA 307 6.02e+01 1ss4A 153 6.21e+01 d.32.1.6 105976 1tmf2 267 6.30e+01 1aym2 1q1gA 276 6.34e+01 c.56.2.1 95574 1yqdA 366 6.36e+01 1a6cA 513 6.42e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1j5kA 89 6.53e+01 d.51.1.1 71565 1zarA 282 6.62e+01 1xyr2 237 6.62e+01 1yymG 313 6.69e+01 1dgi2 268 6.70e+01 1hxs2 272 6.72e+01 3ezaA 249 6.79e+01 1zymA a.60.10.1,c.8.1.2 18112,30707 1nukA 183 6.81e+01 1nukA b.18.1.4 23721 1zymA 258 6.82e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1eza 259 6.82e+01 1zymA a.60.10.1,c.8.1.2 18113,30708 1qfgA 725 6.83e+01 1by5A f.4.3.3 43803 1fi1A 707 6.83e+01 1by5A f.4.3.3 59844 1fcpA 705 6.87e+01 1by5A f.4.3.3 43805 2fcpA 723 6.87e+01 1by5A f.4.3.3 43802 2b5oA 402 6.99e+01 1u0tA 307 7.15e+01 e.52.1.1 107567 2ax8A 256 7.33e+01 1qa1A 554 7.37e+01 1tyv b.80.1.6 28047 1clwA 554 7.37e+01 1tyv b.80.1.6 28043 1tyv 554 7.37e+01 1tyv b.80.1.6 28038 1pov0 341 7.40e+01 1kgyA 181 7.48e+01 b.18.1.4 72449 1shwB 181 7.48e+01 b.18.1.4 105563 1zzkA 82 7.49e+01 1qa2A 554 7.51e+01 1tyv b.80.1.6 28048 1qa3A 554 7.53e+01 1tyv b.80.1.6 28046 1jo8A 58 7.59e+01 b.34.2.1 71774 1z95A 246 7.63e+01 2etvA 346 7.65e+01 1qrcA 559 7.73e+01 1tyv b.80.1.6 28045 1amuA 563 7.76e+01 1amuA e.23.1.1 43351 1ay0A 680 7.89e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 1gpuA 680 7.89e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1tkbA 678 7.89e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31807,31808,33092 1tsp 559 7.93e+01 1tyv b.80.1.6 28044 1qq1A 559 7.96e+01 1tyv b.80.1.6 28041 1qrbA 559 7.97e+01 1tyv b.80.1.6 28042 1rgzA 363 7.99e+01 e.3.1.1 97457 1onhA 364 8.00e+01 e.3.1.1 93357 1xv2A 237 8.08e+01 1efxA 278 8.58e+01 1agdA b.1.1.2,d.19.1.1 20767,38273 1d7aA 161 8.70e+01 1qczA c.23.8.1 31277 2f9dP 43 8.82e+01 1e3gA 263 8.95e+01 1a28A a.123.1.1 59192 2ax6A 256 8.96e+01 1ohvA 472 8.97e+01 c.67.1.4 93031 1i38A 260 8.98e+01 1a28A a.123.1.1 61584 1xj7A 257 8.98e+01 2ax9A 256 8.99e+01