# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rfeA 162 3.04e-14 2asfA 137 6.11e-12 2fg9A 178 1.19e-10 2aq6A 147 2.94e-09 1w9aA 147 3.29e-09 1xxoA 147 4.75e-09 2fhqA 141 2.30e-08 1dnlA 199 4.39e-08 1ci0A b.45.1.1 25753 2furA 209 4.96e-08 1g79A 218 1.39e-07 1ci0A b.45.1.1 25752 1t9mA 214 5.05e-06 1nrgA 261 2.29e-05 b.45.1.1 80694 1vl7A 157 7.77e-05 b.45.1.1 108732 1w3oA 216 8.01e-05 1ty9A 222 1.28e-04 1ejeA 192 2.64e-04 1ejeA b.45.1.2 25757 1flmA 122 3.50e-04 1axj b.45.1.1 25747 1axj 122 1.04e-03 1axj b.45.1.1 25749 2arzA 247 1.12e-03 1ci0A 228 2.22e-03 1ci0A b.45.1.1 25750 1xhnA 184 1.16e-01 1pvtA 238 8.97e-01 c.74.1.1 95189 1qryA 80 1.36e+00 2hddA a.4.1.1 16016 2fywA 267 1.55e+00 1fqgA 263 1.78e+00 1btl e.3.1.1 42699 1m40A 263 1.80e+00 e.3.1.1 74437 1ko3A 230 1.98e+00 d.157.1.1 90974 2fsqA 243 2.36e+00 2d93A 134 2.60e+00 1sdjA 310 2.74e+00 d.21.1.2,d.21.1.2 98807,98808 1ermA 263 3.13e+00 1btl e.3.1.1 42690 1btl 263 3.15e+00 1btl e.3.1.1 42691 1amuA 563 4.33e+00 1amuA e.23.1.1 43351 1fobA 334 4.50e+00 c.1.8.3 83255 1qyaA 307 4.91e+00 d.21.1.2,d.21.1.2 104653,104654 1zzkA 82 5.70e+00 1gc1G 321 5.72e+00 1gc1G d.172.1.1 42493 2gukA 120 5.75e+00 1aquA 297 6.41e+00 1aquA c.37.1.5 31942 1r6xA 395 6.47e+00 b.122.1.3,c.26.1.5 97167,97168 1bdb 277 7.14e+00 1bdb c.2.1.2 29874 1j5kA 89 8.33e+00 d.51.1.1 71565 2aebA 322 8.51e+00 1erjA 393 1.04e+01 1erjA b.69.4.1 27660 1yifA 533 1.06e+01 2gptA 523 1.09e+01 1ftt 68 1.19e+01 2hddA a.4.1.1 15997 2pcdM 238 1.25e+01 3pchM b.3.6.1 22760 1eza 259 1.26e+01 1zymA a.60.10.1,c.8.1.2 18113,30708 1gifA 115 1.37e+01 1dptA d.80.1.3 39837 3pcgM 238 1.41e+01 3pchM b.3.6.1 22742 1xv2A 237 1.61e+01 3pchM 238 1.66e+01 3pchM b.3.6.1 22748 1rm6B 324 1.66e+01 1yemA 179 1.72e+01 1g9mG 321 1.75e+01 1gc1G d.172.1.1 42492 1cmxA 236 1.86e+01 1uch d.3.1.6 37130 1dgrN 79 1.87e+01 1caxB 2bw2A 140 1.92e+01 1g8fA 511 1.96e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1dgrV 79 2.00e+01 1caxB b.82.1.2 28099 1i9yA 347 2.03e+01 1i9yA d.151.1.2 62101 1e2wA 251 2.05e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 2ga9A 297 2.06e+01 1rgs 288 2.08e+01 1rgs b.82.3.2,b.82.3.2 28146,28147 1jlyA 304 2.19e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1hbp 183 2.23e+01 1aqb b.60.1.1 27079 2fauA 341 2.24e+01 1gd0A 122 2.26e+01 1dptA d.80.1.3 39834 1c0aA 585 2.26e+01 1c0aA b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1rzjG 321 2.27e+01 d.172.1.1 98200 1zo2A 129 2.28e+01 1lk9A 448 2.30e+01 c.67.1.1 78057 1dgwX 79 2.31e+01 1caxB b.82.1.2 28091 1r5mA 425 2.32e+01 1vs0A 310 2.39e+01 1zymA 258 2.41e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1t5bA 201 2.42e+01 c.23.5.3 106433 2es9A 115 2.45e+01 2apoA 357 2.45e+01 2etvA 346 2.48e+01 1enp 312 2.48e+01 1enp c.2.1.2 29906 1jlxA 304 2.51e+01 1jlyA b.42.3.1,b.42.3.1 25583,25584 1r6lA 239 2.58e+01 d.14.1.4,d.101.1.1 97153,97154 1chrA 370 2.58e+01 1mucA c.1.11.2,d.54.1.1 29252,38896 1o5uA 101 2.59e+01 b.82.1.8 92518 1widA 130 2.75e+01 1wywA 230 2.84e+01 1yqdA 366 2.89e+01 1s1pA 331 2.95e+01 c.1.7.1 98350 1h54A 754 2.95e+01 a.102.1.4,b.30.5.3 60634,60635 1lki 180 2.99e+01 1lki a.26.1.1 16829 1i9zA 347 3.03e+01 1i9yA d.151.1.2 62102 1ne6A 283 3.06e+01 b.82.3.2,b.82.3.2 91831,91832 1yymG 313 3.22e+01 1vpkA 378 3.28e+01 1oe4A 247 3.40e+01 c.18.1.3 86895 1vk8A 106 3.50e+01 d.58.48.1 108636 1h54B 754 3.51e+01 a.102.1.4,b.30.5.3 60636,60637 1tmcA 175 3.59e+01 1agdA d.19.1.1 38258 1aoqA 567 3.80e+01 1qksA a.3.1.2,b.70.2.1 15934,27692 1k5dC 386 3.87e+01 c.10.1.2 68170 2awaA 390 3.88e+01 1yrgA 385 3.89e+01 1yrgA c.10.1.2 30854 1av6A 289 3.90e+01 3mag c.66.1.25 34218 1ff9A 450 3.93e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1xhfA 123 3.95e+01 1xt8A 292 3.95e+01 1qksA 567 4.00e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2cavA 445 4.09e+01 1dgwA b.82.1.2,b.82.1.2 28094,28095 1vp9 322 4.18e+01 3mag c.66.1.25 34210 3mag 307 4.18e+01 3mag c.66.1.25 34205 1zboA 210 4.22e+01 1n0wA 243 4.24e+01 c.37.1.11 79772 1ohvA 472 4.26e+01 c.67.1.4 93031 1nglA 179 4.33e+01 1nglA b.60.1.1 27146 1sap 66 4.34e+01 1azpA b.34.13.1 37472 1duzA 275 4.37e+01 1agdA b.1.1.2,d.19.1.1 20670,38224 1k8kE 178 4.50e+01 a.148.1.1 68311 1i4fA 275 4.61e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1fr1A 361 4.63e+01 1gceA e.3.1.1 42734 1kt6A 183 4.64e+01 b.60.1.1 84466 1agjA 242 4.82e+01 1agjA b.47.1.1 25827 1x4tA 92 4.82e+01 1m6nA 802 4.83e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1tuaA 191 4.84e+01 d.51.1.1,d.51.1.1 107321,107322 1ap4 89 4.87e+01 1ncx a.39.1.5 17253 1ytaA 180 4.91e+01 1mg4A 113 4.93e+01 d.15.11.1 84953 1gtxA 472 4.95e+01 1gtxA 1yrgB 385 5.00e+01 1yrgA c.10.1.2 30855 2cxaA 256 5.06e+01 1tyv 542 5.13e+01 1tyv b.80.1.6 28038 1wlxA 129 5.14e+01 1tyu 543 5.17e+01 1tyv b.80.1.6 28037 1qq1A 559 5.17e+01 1tyv b.80.1.6 28041 1fivA 113 5.17e+01 1fmb b.50.1.1 26764 1v39 322 5.21e+01 3mag c.66.1.25 34206 1omhA 293 5.26e+01 d.89.1.5 93348 2a1vA 144 5.39e+01 1a35A 538 5.41e+01 1a36A d.163.1.2,e.15.1.1 42171,43264 1f80D 81 5.42e+01 1acp a.28.1.1 59686 1vpt 348 5.52e+01 3mag c.66.1.25 34207 2ca6A 386 5.65e+01 1rbp 182 5.66e+01 1aqb b.60.1.1 27085 1zx8A 136 5.68e+01 1ksr 100 5.69e+01 1qfhA b.1.18.10 21897 1q74A 303 5.74e+01 c.134.1.1 96019 1wh0A 134 5.97e+01 1kgdA 180 6.08e+01 c.37.1.1 68582 1qw9A 502 6.09e+01 b.71.1.2,c.1.8.3 96466,96467 1pbuA 162 6.22e+01 d.58.46.1 88030 1eno 312 6.25e+01 1enp c.2.1.2 29905 2av7A 275 6.31e+01 4fiv 113 6.34e+01 1fmb b.50.1.1 26762 1aqb 183 6.49e+01 1aqb b.60.1.1 27084 1jsxA 207 6.56e+01 c.66.1.20 71846 1wwhA 119 6.58e+01 1tqmA 282 6.61e+01 a.4.5.56,d.144.1.9 107236,107237 1ov2A 99 6.69e+01 a.13.1.1 93580 1rlzA 369 6.71e+01 c.31.1.1 104989 1tikA 213 6.74e+01 c.23.5.3 107003 1ej9A 563 6.80e+01 1a36A d.163.1.2,e.15.1.1 42172,43265 1kv7A 488 6.81e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1k4tA 592 6.84e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1iqrA 420 7.03e+01 a.99.1.1,c.28.1.1 66275,66276 1zarA 282 7.07e+01 2bjrA 368 7.09e+01 1k9vF 201 7.17e+01 c.23.16.1 68365 1asyA 490 7.21e+01 1b8aA b.40.4.1,d.104.1.1 25242,40763 1o50A 157 7.22e+01 d.37.1.1,d.37.1.1 92478,92479 1j96A 323 7.26e+01 c.1.7.1 71616 1a31A 538 7.36e+01 1a36A d.163.1.2,e.15.1.1 42170,43263 2cxxA 190 7.67e+01 1e8bA 160 7.73e+01 1e8bA g.14.1.2,g.14.1.2,g.27.1.1 44671,44672,44951 1ufkA 254 7.76e+01 c.66.1.39 99340 2fivA 116 7.83e+01 1fmb b.50.1.1 26766 3fivA 116 7.87e+01 1fmb b.50.1.1 26768 1bbpA 173 7.88e+01 1bbpA b.60.1.1 27147 1tsp 559 7.93e+01 1tyv b.80.1.6 28044 1nrzA 164 8.04e+01 c.38.1.1 86131 1qa1A 554 8.06e+01 1tyv b.80.1.6 28047 1rg9A 383 8.06e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1fnmA 691 8.08e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 25709,32144,37546,39302,39303 2cx1A 187 8.24e+01 2guhA 214 8.24e+01 1v9yA 167 8.32e+01 d.110.3.2 108454 1h9sA 140 8.44e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1ldg 316 8.45e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1hsbA 270 8.48e+01 1agdA b.1.1.2,d.19.1.1 20736,38257 1ylqA 96 8.52e+01 1hr0W 71 8.60e+01 1ah9 b.40.4.5 25329 1lre 81 8.72e+01 1lre a.13.1.1 16376 1yagA 375 8.79e+01 1yagA c.55.1.1,c.55.1.1 33449,33450 1z3iX 644 8.96e+01 1h6oA 204 8.99e+01 a.146.1.1 60689 1vi1A 345 8.99e+01 c.77.1.4 100724