# List of top-scoring protein chains for T0370.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 5.89e-30 1ci0A b.45.1.1 25753 1g79A 218 1.06e-29 1ci0A b.45.1.1 25752 1nrgA 261 1.25e-26 b.45.1.1 80694 1t9mA 214 2.30e-22 1ci0A 228 1.70e-21 1ci0A b.45.1.1 25750 1ty9A 222 3.33e-21 2a2jA 246 5.90e-21 1rfeA 162 1.06e-20 2fhqA 141 5.96e-16 2asfA 137 2.59e-14 2aq6A 147 4.69e-13 1vl7A 157 5.34e-13 b.45.1.1 108732 2arzA 247 1.11e-12 2fg9A 178 4.20e-12 2furA 209 2.13e-09 1xhnA 184 1.66e-07 1w3oA 216 5.60e-05 1wlkA 122 4.48e-04 1wllA 122 4.49e-04 1wliA 122 4.51e-04 1flmA 122 4.54e-04 1axj b.45.1.1 25747 1ejeA 192 2.66e-01 1ejeA b.45.1.2 25757 2greA 349 2.78e-01 1cf3A 583 1.34e+00 1gpeA c.3.1.2,d.16.1.1 30385,37949 1q5xA 161 1.86e+00 c.8.7.1 95947 1wvbA 322 2.77e+00 2aebA 322 2.82e+00 1gu6A 452 4.23e+00 a.138.1.3 70575 2ctfA 102 6.69e+00 1pvtA 238 8.41e+00 c.74.1.1 95189 1regX 122 1.13e+01 1regX d.58.27.1 39406 1jkmA 358 1.24e+01 1jkmA c.69.1.2 34633 1yvhA 329 1.26e+01 1jkmB 361 1.27e+01 1jkmA c.69.1.2 34634 1tr8A 102 1.35e+01 2cuiA 112 1.50e+01 1aquA 297 1.67e+01 1aquA c.37.1.5 31942 1o07A 358 1.68e+01 e.3.1.1 92390 1b47A 304 1.72e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1ukgA 252 1.79e+01 b.29.1.1 99489 1pcfA 66 1.90e+01 1pcfA d.18.1.1 38142 2d93A 134 1.92e+01 2cblA 305 2.00e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1gt7A 274 2.01e+01 c.74.1.1 70398 1ojrA 274 2.02e+01 c.74.1.1 93147 1djuA 388 2.10e+01 1bjwA c.67.1.1 59116 1gdeA 389 2.23e+01 c.67.1.1 60456 1nd4A 264 2.30e+01 d.144.1.6 91815 1qdmA 478 2.68e+01 1smrA a.64.1.2,b.50.1.2 18141,26838 1bw3 125 2.74e+01 1bw4 b.52.1.2 26899 1llnA 262 2.78e+01 d.165.1.1 84625 1o54A 277 3.05e+01 c.66.1.13 92482 2c4nA 250 3.14e+01 2ffyA 358 3.18e+01 1rflA 172 3.21e+01 c.37.1.8 97384 1khbA 625 3.25e+01 c.91.1.1,c.109.1.1 68606,68607 1fp2A 352 3.28e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1l0eA 358 3.66e+01 e.3.1.1 73396 1ju3A 583 3.83e+01 b.18.1.13,c.69.1.21 67300,67301 1a34A 159 3.90e+01 1a34A b.121.7.1 23286 1x54A 434 3.93e+01 1fsyA 358 4.06e+01 1gceA e.3.1.1 60016 1my8A 358 4.15e+01 e.3.1.1 85236 1b8aA 438 4.18e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1q5rH 294 4.18e+01 d.153.1.4 95925 1x4nA 92 4.27e+01 1q2lA 939 4.34e+01 1z3yA 238 4.38e+01 1sbf 253 4.48e+01 1led b.29.1.1 24102 1z3xA 238 4.51e+01 1fp3A 402 4.53e+01 1fp3A a.102.1.3 18842 1l0gA 358 4.58e+01 e.3.1.1 73400 1jv0A 260 4.58e+01 b.74.1.1 63303 2foyA 260 4.58e+01 1rvgA 305 4.66e+01 c.1.10.2 97920 1tkeA 224 4.71e+01 1crm 260 4.73e+01 2cba b.74.1.1 27816 2cab 261 4.75e+01 2cba b.74.1.1 27906 2gs8A 317 4.82e+01 2a90A 240 4.98e+01 1l0dA 358 5.00e+01 e.3.1.1 73394 1x7dA 350 5.00e+01 1x3aA 100 5.03e+01 2etvA 346 5.13e+01 1txgA 335 5.34e+01 1j7mA 72 5.62e+01 1e8bA g.14.1.2 62699 1uehA 253 5.67e+01 c.101.1.1 99259 2bdpA 580 5.69e+01 1xwl c.55.3.5,e.8.1.1 33709,43002 1u4bA 580 5.76e+01 c.55.3.5,e.8.1.1 107664,107665 1nk4A 580 5.79e+01 c.55.3.5,e.8.1.1 91923,91924 1wy2A 351 5.96e+01 1g0cA 364 6.19e+01 7a3hA c.1.8.3 60165 1iy8A 267 6.31e+01 c.2.1.2 83774 2clsA 198 6.38e+01 1j5kA 89 6.42e+01 d.51.1.1 71565 1l7qA 574 6.45e+01 b.18.1.13,c.69.1.21 77791,77792 2h0vA 338 6.52e+01 2gukA 120 6.57e+01 2fw2A 260 6.70e+01 1khmA 89 6.72e+01 1dt4A d.51.1.1 38809 1kv9A 668 6.74e+01 a.3.1.6,b.70.1.1 73056,73057 1y3tA 337 6.99e+01 1ko3A 230 7.21e+01 d.157.1.1 90974 1o8uA 257 7.34e+01 c.14.1.3 81194 1z0mA 96 7.39e+01 1zdyA 307 7.59e+01 1vj7A 393 7.68e+01 a.211.1.1,d.218.1.8 100801,100802 1a7tA 232 7.74e+01 1a7tA d.157.1.1 42041 1l7rA 574 7.80e+01 b.18.1.13,c.69.1.21 77793,77794 1yowA 242 7.86e+01 2pelA 236 7.88e+01 1led b.29.1.1 24082 2f6uA 234 7.97e+01 1wgoA 123 7.99e+01 1nsf 273 8.00e+01 1d2nA c.37.1.20 32429 1tbbA 332 8.10e+01 a.211.1.2 106741 1zq1A 438 8.11e+01 1xrtA 467 8.11e+01 2d7mA 115 8.24e+01 2bllA 345 8.30e+01 1v6iA 232 8.34e+01 b.29.1.1 100383 1krhA 338 8.34e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1p3wA 404 8.38e+01 c.67.1.3 87752 1hlkA 227 8.47e+01 d.157.1.1 65848 1szoA 257 8.61e+01 c.14.1.3 106164 1hdmA 201 8.61e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 2b7uA 257 8.69e+01 1lv5A 580 8.73e+01 c.55.3.5,e.8.1.1 84719,84720 2culA 232 8.79e+01 2gp5A 349 8.89e+01 1vqoE 178 8.93e+01