# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 3.28e-22 1ci0A b.45.1.1 25753 1g79A 218 6.36e-22 1ci0A b.45.1.1 25752 1nrgA 261 1.46e-19 b.45.1.1 80694 1ty9A 222 1.57e-17 1rfeA 162 3.52e-16 2fhqA 141 6.83e-13 2arzA 247 1.20e-12 2asfA 137 6.49e-12 1vl7A 157 3.48e-11 b.45.1.1 108732 2aq6A 147 8.85e-11 1w9aA 147 2.39e-10 2fg9A 178 4.00e-09 2furA 209 1.40e-08 1xhnA 184 1.90e-07 1w3oA 216 2.06e-05 1flmA 122 5.33e-05 1axj b.45.1.1 25747 1ejeA 192 5.65e-02 1ejeA b.45.1.2 25757 1pvtA 238 3.91e-01 c.74.1.1 95189 1iwmA 186 6.66e-01 b.125.1.2 83758 1llnA 262 1.32e+00 d.165.1.1 84625 1i0rA 169 1.53e+00 1i0rA b.45.1.2 61489 1ojrA 274 1.55e+00 c.74.1.1 93147 2cw5A 255 1.84e+00 1vclA 432 2.09e+00 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2cbzA 237 2.16e+00 2bbsA 290 2.24e+00 1widA 130 3.65e+00 1b8aA 438 3.78e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1wsrA 375 3.86e+00 1zd7A 159 4.03e+00 1tr8A 102 5.17e+00 1k0iA 394 6.20e+00 c.3.1.2,d.16.1.2 67942,67943 1b25A 619 6.87e+00 1b25A a.110.1.1,d.152.1.1 19044,41796 1xdfA 157 7.32e+00 2bgiA 272 7.74e+00 1uwvA 433 8.80e+00 b.40.4.12,c.66.1.40 100128,100129 2a1kA 233 9.04e+00 1jvbA 347 9.14e+00 b.35.1.2,c.2.1.1 77181,77182 1w8oA 601 9.23e+00 1ykjA 394 9.92e+00 2f69A 261 1.10e+01 2gjgA 248 1.18e+01 2bllA 345 1.29e+01 1ep3B 262 1.56e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 2bswA 146 1.56e+01 1w6sA 599 1.58e+01 2ew0A 192 1.61e+01 1bupA 386 1.67e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1c8nA 276 1.73e+01 1smvA b.121.4.7 23308 1gpc 218 1.73e+01 1gpc b.40.4.7 25393 1x7dA 350 1.77e+01 1bqbA 301 1.78e+01 1hyt d.92.1.2 58962 1h3gA 601 1.81e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1aun 208 1.85e+01 1thv b.25.1.1 23900 2arpA 116 1.85e+01 1z5hA 780 1.91e+01 7ahlA 293 2.04e+01 7ahlA f.6.1.1 43812 1l0qA 391 2.04e+01 b.1.3.1,b.69.2.3 77644,77645 1yr2A 741 2.05e+01 1t6gC 184 2.06e+01 b.29.1.11 106569 1gtmA 419 2.07e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1o54A 277 2.14e+01 c.66.1.13 92482 1cjxA 357 2.15e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1hs6A 611 2.16e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1q2lA 939 2.22e+01 1t3yA 141 2.29e+01 1gwyA 175 2.36e+01 b.97.1.1 83356 1tkeA 224 2.51e+01 1hfuA 503 2.52e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1vzyA 291 2.58e+01 1mjfA 281 2.60e+01 c.66.1.17 79198 1n6aA 259 2.64e+01 b.76.2.1,b.85.7.1 80121,80122 1oa4A 222 2.74e+01 b.29.1.11 86731 1zkpA 268 2.74e+01 1qh5A 260 2.80e+01 1qh5A d.157.1.2 42057 1yeyA 444 2.83e+01 1ve6A 582 3.01e+01 2glfA 450 3.11e+01 1ir6A 424 3.18e+01 c.107.1.2 71342 1am2 199 3.24e+01 1am2 b.86.1.2 28381 1i39A 225 3.24e+01 1ekeA c.55.3.1 61585 1onwA 390 3.36e+01 b.92.1.7,c.1.9.13 87172,87173 1u9aA 160 3.38e+01 1u9aA d.20.1.1 38333 2b0aA 186 3.40e+01 2grrA 161 3.63e+01 2fvgA 340 3.64e+01 1k8qA 377 3.65e+01 c.69.1.6 72177 1rg9A 383 3.73e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1f00I 282 3.73e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1na6A 404 3.76e+01 b.142.1.1,c.52.1.22 91748,91749 2gokA 429 3.84e+01 2d37A 176 4.01e+01 1ooeA 236 4.05e+01 c.2.1.2 87196 2a8jA 420 4.06e+01 1y1pA 342 4.09e+01 1bywA 110 4.13e+01 1bywA d.110.3.6 40912 1msk 331 4.38e+01 1msk d.173.1.1 42495 1h6lA 353 4.39e+01 b.68.3.1 60687 1bvoA 175 4.40e+01 1a3qA b.2.5.3 22457 2cveA 191 4.54e+01 1yge 839 4.58e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1yqfA 203 4.86e+01 1m65A 245 4.90e+01 c.6.3.1 84847 1yqdA 366 4.90e+01 1s1dA 331 5.06e+01 b.67.3.1 98344 1ryaA 160 5.12e+01 d.113.1.5 105122 1vkbA 161 5.14e+01 d.269.1.1 108643 1b0uA 262 5.21e+01 1b0uA c.37.1.12 32370 1k32A 1045 5.23e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1v4sA 455 5.34e+01 c.55.1.3,c.55.1.3 100309,100310 1ut9A 609 5.37e+01 a.102.1.2,b.1.18.2 99912,99913 1fgyA 127 5.41e+01 1faoA b.55.1.1 26976 1k8kC 372 5.48e+01 b.69.4.1 68308 2gukA 120 5.51e+01 1vqoE 178 5.53e+01 1pbyA 489 5.55e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2bitX 165 5.61e+01 4bcl 366 5.67e+01 4bcl b.75.1.1 27968 1k0wA 231 5.68e+01 c.74.1.1 77220 2aq5A 402 5.69e+01 2bgcA 238 5.78e+01 1xqbA 247 5.83e+01 1at0 145 5.88e+01 1at0 b.86.1.1 28374 2choA 716 5.90e+01 2dexX 671 5.93e+01 2fo3A 125 5.99e+01 2c5uA 375 6.09e+01 1ixcA 294 6.16e+01 a.4.5.37,c.94.1.1 83764,83765 3eipA 84 6.17e+01 3eipA d.26.2.1 38434 2ai4A 119 6.24e+01 2g84A 197 6.27e+01 1ockA 412 6.36e+01 c.117.1.1 86802 1w07A 659 6.36e+01 1xkpC 143 6.39e+01 2d13A 227 6.50e+01 2czrA 226 6.53e+01 1lzlA 323 6.63e+01 c.69.1.2 78306 1rypK 198 6.67e+01 d.153.1.4 41879 1n67A 359 6.71e+01 b.2.3.4,b.2.3.4 85354,85355 1vplA 256 6.71e+01 1yt3A 375 6.84e+01 2f06A 144 6.88e+01 2ck3A 510 6.96e+01 1pl8A 356 6.97e+01 b.35.1.2,c.2.1.1 94878,94879 1fehA 574 7.02e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1yewA 382 7.05e+01 1ywxA 102 7.06e+01 1j0hA 588 7.09e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1a34A 159 7.11e+01 1a34A b.121.7.1 23286 1jwqA 179 7.15e+01 c.56.5.6 90921 1u4bA 580 7.19e+01 c.55.3.5,e.8.1.1 107664,107665 1bvyF 191 7.24e+01 1bvyF c.23.5.1 31207 1yna 194 7.28e+01 1axkA b.29.1.11 24335 1lbvA 252 7.29e+01 e.7.1.1 73813 2cqsA 842 7.34e+01 2gs8A 317 7.41e+01 1wrmA 165 7.45e+01 1ig8A 486 7.52e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1m7yA 435 7.53e+01 c.67.1.4 78761 1ukgA 252 7.55e+01 b.29.1.1 99489 1x88A 359 7.58e+01 1qg3A 195 7.68e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1rlmA 271 7.70e+01 1n9lA 109 7.72e+01 d.110.3.6 85468 2bjqA 345 7.76e+01 1ta9A 450 7.83e+01 1zghA 260 7.86e+01 2bjrA 368 7.88e+01 2a2cA 478 7.91e+01 1w7jA 795 7.93e+01 1a6cA 513 8.16e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1vqzA 341 8.20e+01 1cruA 454 8.24e+01 1c9uA b.68.2.1 27617 2aq9A 262 8.26e+01 2b8wA 328 8.26e+01 2f15A 96 8.27e+01 2dpkA 152 8.34e+01 1lgpA 116 8.35e+01 b.26.1.2 73890 1ryp1 222 8.39e+01 1ryp1 1zh1A 163 8.48e+01 1h7zA 194 8.54e+01 1qhvA b.21.1.1 60733 1xyiA 66 8.56e+01 1y0yA 353 8.59e+01 1p0fA 373 8.63e+01 b.35.1.2,c.2.1.1 87642,87643 2chnA 716 8.71e+01 1o22A 170 8.83e+01 d.238.1.1 86557 1i52A 236 8.99e+01 1i52A c.68.1.13 61767