# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 3.08e-32 1ci0A b.45.1.1 25753 1g79A 218 1.13e-31 1ci0A b.45.1.1 25752 1nrgA 261 4.58e-28 b.45.1.1 80694 1ty9A 222 1.78e-23 1rfeA 162 3.61e-22 2fhqA 141 1.58e-18 2asfA 137 1.75e-17 1vl7A 157 1.06e-15 b.45.1.1 108732 2arzA 247 1.82e-15 1w9aA 147 1.90e-15 2fg9A 178 2.83e-15 2aq6A 147 3.58e-15 2furA 209 6.52e-12 1xhnA 184 1.89e-09 1w3oA 216 2.07e-07 1flmA 122 2.85e-06 1axj b.45.1.1 25747 1ejeA 192 3.97e-03 1ejeA b.45.1.2 25757 2gs8A 317 3.38e-01 1x54A 434 4.41e-01 2bllA 345 1.07e+00 1h72C 296 1.11e+00 d.14.1.5,d.58.26.1 60712,60713 2etvA 346 1.36e+00 2bvfA 459 1.66e+00 1fn9A 365 1.93e+00 1fn9A d.196.1.1 59894 1aquA 297 2.31e+00 1aquA c.37.1.5 31942 2gukA 120 2.45e+00 1pvtA 238 2.88e+00 c.74.1.1 95189 1wv2A 265 3.24e+00 1fp2A 352 3.29e+00 1fpxA a.4.5.29,c.66.1.12 59941,59942 2gtqA 867 3.54e+00 1i8dA 213 3.63e+00 b.43.4.3,b.43.4.3 61953,61954 1g8aA 227 3.78e+00 c.66.1.3 90506 1jmtA 104 4.05e+00 d.58.7.3 63180 1o54A 277 4.37e+00 c.66.1.13 92482 1ko3A 230 4.73e+00 d.157.1.1 90974 1bdb 277 4.93e+00 1bdb c.2.1.2 29874 2aq9A 262 4.94e+00 1wsrA 375 4.96e+00 1ojrA 274 5.09e+00 c.74.1.1 93147 1bqbA 301 5.17e+00 1hyt d.92.1.2 58962 1qh5A 260 5.61e+00 1qh5A d.157.1.2 42057 2d93A 134 6.61e+00 1zzkA 82 6.63e+00 1ukgA 252 6.67e+00 b.29.1.1 99489 1tr8A 102 7.01e+00 1b8aA 438 7.21e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1r2zA 274 7.92e+00 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1iirA 415 8.06e+00 1iirA c.87.1.5 62453 1m40A 263 8.32e+00 e.3.1.1 74437 1q5xA 161 8.83e+00 c.8.7.1 95947 1h9mA 145 9.00e+00 1h9jA b.40.6.2,b.40.6.2 60833,60834 1rw7A 243 9.46e+00 c.23.16.2 97963 2cbzA 237 9.95e+00 1l0wA 580 1.02e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1q0eA 152 1.04e+01 b.1.8.1 95504 1umdB 324 1.05e+01 c.36.1.7,c.48.1.2 99600,99601 1r6xA 395 1.06e+01 b.122.1.3,c.26.1.5 97167,97168 1khtA 192 1.07e+01 c.37.1.1 84401 1k3xA 262 1.08e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1jjtA 228 1.09e+01 1a7tA d.157.1.1 63139 1n3lA 372 1.13e+01 c.26.1.1 79966 1e9pA 151 1.13e+01 1mfmA b.1.8.1 22215 1qvzA 237 1.13e+01 c.23.16.2 96453 1qfjA 232 1.18e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1bupA 386 1.26e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1v0dA 329 1.31e+01 d.4.1.7 108204 1b25A 619 1.35e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 2a1vA 144 1.36e+01 2bbsA 290 1.43e+01 1z5yE 149 1.53e+01 1xsoA 150 1.57e+01 1mfmA b.1.8.1 22273 1uwvA 433 1.67e+01 b.40.4.12,c.66.1.40 100128,100129 1ff9A 450 1.73e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2h0bA 184 1.78e+01 1zboA 210 1.82e+01 1wj9A 211 1.90e+01 1m5wA 243 1.91e+01 c.1.24.1 84836 1iwmA 186 1.93e+01 b.125.1.2 83758 1krhA 338 1.97e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1yvhA 329 1.99e+01 1xr4A 509 2.01e+01 1ki9A 192 2.05e+01 c.37.1.1 84404 2bgiA 272 2.05e+01 1yge 839 2.08e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1gd1O 334 2.17e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1fehA 574 2.26e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 2bjdA 101 2.27e+01 1bg6 359 2.38e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 2etjA 250 2.41e+01 2fswA 107 2.42e+01 1dqwA 267 2.46e+01 1dqwA c.1.2.3 28551 1b5qA 472 2.46e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1lc5A 364 2.47e+01 c.67.1.1 73827 1qf9A 194 2.48e+01 1zin c.37.1.1 31848 1ye8A 178 2.49e+01 1rg9A 383 2.58e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1otjA 283 2.61e+01 b.82.2.5 93517 1oj4A 283 2.88e+01 d.14.1.5,d.58.26.5 93083,93084 1zetA 388 2.89e+01 1txgA 335 3.02e+01 1xneA 113 3.13e+01 2fafA 608 3.15e+01 1zndA 174 3.18e+01 1uayA 242 3.23e+01 c.2.1.2 88390 2foyA 260 3.28e+01 1i0rA 169 3.29e+01 1i0rA b.45.1.2 61489 1q1rA 431 3.36e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1wb4A 297 3.43e+01 1xv2A 237 3.44e+01 1nlfA 279 3.45e+01 c.37.1.11 85850 1fgkA 310 3.45e+01 1fgkA d.144.1.7 41693 1e6uA 321 3.46e+01 1bsvA c.2.1.2 29805 1fp3A 402 3.47e+01 1fp3A a.102.1.3 18842 1ywxA 102 3.47e+01 2apr 325 3.53e+01 2er7E b.50.1.2 26819 1j8fA 323 3.57e+01 1j8fA c.31.1.5 62738 1n82A 331 3.59e+01 c.1.8.3 91703 1zx1A 231 3.61e+01 1vflA 356 3.62e+01 2f9dA 125 3.78e+01 1tif 78 3.78e+01 1tif d.15.8.1 37836 1vknA 351 3.79e+01 c.2.1.3,d.81.1.1 108676,108677 1qy1A 174 3.80e+01 b.60.1.1 96568 1oapA 109 3.87e+01 d.79.7.1 92706 1crzA 403 3.98e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1jgsA 138 4.03e+01 a.4.5.28 66683 1xp8A 366 4.04e+01 1uzmA 247 4.10e+01 1pgtA 210 4.16e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1ash 150 4.16e+01 1ash a.1.1.2 15622 1ut7A 171 4.16e+01 b.143.1.1 99906 1vc1A 110 4.18e+01 c.13.2.1 108493 1z0wA 207 4.32e+01 2bkyX 89 4.33e+01 1h8eA 510 4.35e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1h4aX 173 4.37e+01 b.11.1.1,b.11.1.1 83479,83480 1lbkA 208 4.38e+01 a.45.1.1,c.47.1.5 73809,73810 1dhkB 223 4.39e+01 1led b.29.1.1 24157 1chuA 540 4.46e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1gnwA 211 4.50e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1zgzA 122 4.59e+01 1h2cA 140 4.60e+01 b.31.1.1 83462 1b79A 119 4.62e+01 1b79A a.81.1.1 18451 1rm6B 324 4.63e+01 1w0dA 337 4.63e+01 1zirA 173 4.67e+01 1qhvA 195 4.73e+01 1qhvA b.21.1.1 23842 2ebn 289 4.75e+01 2ebn c.1.8.5 28990 2c46A 241 4.81e+01 1iugA 352 4.82e+01 c.67.1.3 90699 1z3xA 238 4.83e+01 1h32A 261 4.87e+01 a.3.1.8,a.3.1.8 76618,76619 2a2rA 210 4.95e+01 1vavA 222 4.97e+01 b.29.1.18 108472 1ho8A 480 4.98e+01 1ho8A a.118.1.9 61107 1uehA 253 4.98e+01 c.101.1.1 99259 1gzcA 239 5.01e+01 b.29.1.1 70803 1xgkA 352 5.03e+01 1sg0A 230 5.05e+01 2ew2A 316 5.11e+01 1t46A 313 5.12e+01 d.144.1.7 106397 1cydA 244 5.14e+01 1cydA c.2.1.2 29825 2ewtA 71 5.22e+01 1zxxA 319 5.23e+01 1khbA 625 5.25e+01 c.91.1.1,c.109.1.1 68606,68607 1h6fA 193 5.42e+01 b.2.5.4 70901 1wdtA 665 5.44e+01 1rwrA 301 5.51e+01 b.80.1.11 97990 1ytaA 180 5.52e+01 1kxlA 199 5.58e+01 b.40.4.3 73155 1gk9B 557 5.60e+01 1hfuA 503 5.61e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2fggA 101 5.63e+01 1kvkA 395 5.65e+01 d.14.1.5,d.58.26.3 73060,73061 1h3fA 432 5.69e+01 c.26.1.1,d.66.1.4 76631,76632 1j09A 468 5.71e+01 a.97.1.1,c.26.1.1 77025,77026 1hs6A 611 5.74e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1m8uA 173 5.86e+01 b.11.1.1,b.11.1.1 91233,91234 2bitX 165 5.88e+01 1gpmA 525 5.96e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2czvC 120 5.97e+01 1kl9A 182 6.09e+01 b.40.4.5 72681 1uozA 315 6.10e+01 2cr9A 139 6.12e+01 1xhdA 173 6.13e+01 1t4bA 367 6.18e+01 c.2.1.3,d.81.1.1 106406,106407 1gjjA 168 6.21e+01 a.140.1.1,a.140.1.1 83291,83292 2f31A 233 6.29e+01 1r7mA 235 6.31e+01 1p80A 753 6.38e+01 c.23.16.3,e.5.1.1 94337,94338 2c4nA 250 6.44e+01 2b2nA 344 6.59e+01 1zr6A 503 6.66e+01 2bbeA 108 6.72e+01 1llnA 262 6.79e+01 d.165.1.1 84625 2ew0A 192 6.80e+01 1fmcA 255 6.83e+01 1cydA c.2.1.2 29856 1tq4A 413 6.88e+01 c.37.1.8 107201 2c8vA 288 6.92e+01 1l3iA 192 6.96e+01 c.66.1.22 77676 1xnkA 196 7.02e+01 1zymA 258 7.10e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1z5hA 780 7.10e+01 1vqoE 178 7.16e+01 2ck3A 510 7.17e+01 1yb0A 159 7.19e+01 1qmeA 702 7.24e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1fpzA 212 7.34e+01 1fpzA c.45.1.1 59976 1winA 143 7.47e+01 1xewY 172 7.51e+01 1o66A 275 7.53e+01 c.1.12.8 92547 2ffeA 311 7.55e+01 1qd1A 325 7.55e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1ur1A 378 7.55e+01 c.1.8.3 99804 1a6cA 513 7.55e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1y2mA 716 7.63e+01 1xuvA 178 7.67e+01 1szoA 257 7.91e+01 c.14.1.3 106164 1h30A 422 7.92e+01 b.29.1.4,b.29.1.4 76604,76605 1eexB 224 7.96e+01 1dioB c.51.3.1 33213 1qpcA 279 7.97e+01 1fgkA d.144.1.7 41685 1wmmA 145 7.99e+01 2g09A 297 8.08e+01 2ahuA 531 8.11e+01 1w68A 390 8.13e+01 a.25.1.2 109216 1csn 298 8.13e+01 1csn d.144.1.7 41664 1u4bA 580 8.14e+01 c.55.3.5,e.8.1.1 107664,107665 1bg1A 722 8.19e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1ejfA 125 8.35e+01 1ejfA b.15.1.2 23683 1l1oC 181 8.38e+01 b.40.4.3 73480 1orrA 347 8.39e+01 c.2.1.2 93460 1k8kE 178 8.41e+01 a.148.1.1 68311 1bvyF 191 8.47e+01 1bvyF c.23.5.1 31207 1zdyA 307 8.53e+01 1dkuA 317 8.56e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1s2wA 295 8.62e+01 c.1.12.7 98407 1x7dA 350 8.84e+01 1dptA 117 8.92e+01 1dptA d.80.1.3 39862 1kcqA 104 8.98e+01 d.109.1.1 68449