# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 4.33e-23 1ci0A b.45.1.1 25753 1g79A 218 5.00e-23 1ci0A b.45.1.1 25752 1nrgA 261 2.23e-20 b.45.1.1 80694 1ty9A 222 4.81e-18 1rfeA 162 2.50e-16 2fhqA 141 8.49e-14 2asfA 137 3.65e-12 2arzA 247 4.40e-12 1vl7A 157 2.04e-11 b.45.1.1 108732 2aq6A 147 3.01e-11 1w9aA 147 5.44e-11 2fg9A 178 4.57e-10 2furA 209 2.95e-09 1xhnA 184 4.06e-07 1w3oA 216 2.82e-06 1flmA 122 4.59e-05 1axj b.45.1.1 25747 1ejeA 192 5.79e-02 1ejeA b.45.1.2 25757 1pvtA 238 2.13e-01 c.74.1.1 95189 1iwmA 186 8.14e-01 b.125.1.2 83758 1llnA 262 9.92e-01 d.165.1.1 84625 2cw5A 255 1.00e+00 2cbzA 237 2.23e+00 1i0rA 169 2.49e+00 1i0rA b.45.1.2 61489 1ojrA 274 2.84e+00 c.74.1.1 93147 1wsrA 375 3.50e+00 2bbsA 290 7.20e+00 1b8aA 438 7.23e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 2fvgA 340 7.92e+00 2glfA 450 8.01e+00 2bgiA 272 8.07e+00 1widA 130 8.08e+00 1b25A 619 8.39e+00 1b25A a.110.1.1,d.152.1.1 19044,41796 1vclA 432 8.89e+00 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1jkmB 361 9.21e+00 1jkmA c.69.1.2 34634 2cveA 191 1.10e+01 1l0qA 391 1.14e+01 b.1.3.1,b.69.2.3 77644,77645 2d13A 227 1.14e+01 2bllA 345 1.17e+01 1gwyA 175 1.20e+01 b.97.1.1 83356 1xdfA 157 1.22e+01 1bupA 386 1.24e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1zd7A 159 1.28e+01 1o54A 277 1.36e+01 c.66.1.13 92482 1xzwA 426 1.43e+01 1ty0A 211 1.44e+01 b.40.2.2,d.15.6.1 107440,107441 1ukgA 252 1.49e+01 b.29.1.1 99489 2arpA 116 1.50e+01 1ykjA 394 1.67e+01 1bqbA 301 1.68e+01 1hyt d.92.1.2 58962 1ko3A 230 1.72e+01 d.157.1.1 90974 1ixcA 294 1.77e+01 a.4.5.37,c.94.1.1 83764,83765 1am2 199 1.86e+01 1am2 b.86.1.2 28381 1w8oA 601 1.94e+01 1jvbA 347 2.02e+01 b.35.1.2,c.2.1.1 77181,77182 1k0iA 394 2.04e+01 c.3.1.2,d.16.1.2 67942,67943 1ep3B 262 2.09e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1n6aA 259 2.14e+01 b.76.2.1,b.85.7.1 80121,80122 1h7zA 194 2.18e+01 1qhvA b.21.1.1 60733 1tr8A 102 2.18e+01 2c4xA 260 2.19e+01 1mjfA 281 2.21e+01 c.66.1.17 79198 2a1kA 233 2.25e+01 1fehA 574 2.26e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1zkpA 268 2.30e+01 1s1dA 331 2.35e+01 b.67.3.1 98344 1z0nA 96 2.40e+01 7ahlA 293 2.45e+01 7ahlA f.6.1.1 43812 2f69A 261 2.52e+01 1yeyA 444 2.56e+01 1ywxA 102 2.58e+01 1aun 208 2.59e+01 1thv b.25.1.1 23900 1ockA 412 2.78e+01 c.117.1.1 86802 2etjA 250 2.82e+01 2bswA 146 2.83e+01 1gtmA 419 2.86e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1fi4A 416 2.87e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 2fe7A 166 3.06e+01 1vqzA 341 3.08e+01 1uwvA 433 3.12e+01 b.40.4.12,c.66.1.40 100128,100129 1z5hA 780 3.33e+01 2gjgA 248 3.38e+01 1twfK 120 3.39e+01 1yr2A 741 3.40e+01 1vkbA 161 3.42e+01 d.269.1.1 108643 1u9aA 160 3.45e+01 1u9aA d.20.1.1 38333 1gpc 218 3.46e+01 1gpc b.40.4.7 25393 1i39A 225 3.53e+01 1ekeA c.55.3.1 61585 1yqdA 366 3.56e+01 1oi0A 124 3.70e+01 c.97.3.1 93045 1umwA 237 3.77e+01 d.223.1.2,d.223.1.2 99631,99632 2grrA 161 3.82e+01 1w6sA 599 3.86e+01 1rg9A 383 3.87e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1h3gA 601 4.02e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1vqoE 178 4.05e+01 2f15A 96 4.07e+01 1c7sA 858 4.08e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1yb2A 275 4.16e+01 1ooeA 236 4.18e+01 c.2.1.2 87196 1a34A 159 4.27e+01 1a34A b.121.7.1 23286 1k0wA 231 4.27e+01 c.74.1.1 77220 1rypF 233 4.32e+01 1rypF d.153.1.4 41937 1t3yA 141 4.34e+01 1y1pA 342 4.35e+01 2dexX 671 4.39e+01 1zghA 260 4.40e+01 1oa4A 222 4.43e+01 b.29.1.11 86731 1nxuA 333 4.50e+01 c.122.1.1 86389 1yge 839 4.51e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1vzyA 291 4.52e+01 1edqA 540 4.68e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1mkaA 171 4.71e+01 1mkaA d.38.1.2 38543 1vj0A 380 4.72e+01 b.35.1.2,c.2.1.1 100786,100787 1msk 331 4.73e+01 1msk d.173.1.1 42495 1c8nA 276 4.85e+01 1smvA b.121.4.7 23308 1rypK 198 4.87e+01 d.153.1.4 41879 1wrmA 165 4.94e+01 1w66A 232 5.03e+01 2h0bA 184 5.05e+01 1u4bA 580 5.09e+01 c.55.3.5,e.8.1.1 107664,107665 1zt3A 80 5.17e+01 1yt3A 375 5.20e+01 2aq5A 402 5.33e+01 1g57A 217 5.35e+01 1g57A d.115.1.2 60253 2g84A 197 5.37e+01 1twyA 290 5.44e+01 2bjfA 329 5.59e+01 1rlmA 271 5.70e+01 1udzA 182 5.71e+01 b.51.1.1 99239 1s5jA 847 5.79e+01 1s2wA 295 5.90e+01 c.1.12.7 98407 1cg2A 393 6.17e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1tbd 134 6.24e+01 2tbd d.89.1.1 40240 1f6bA 198 6.43e+01 c.37.1.8 64986 2aexA 346 6.50e+01 1zm8A 259 6.55e+01 1lgpA 116 6.61e+01 b.26.1.2 73890 1xnkA 196 6.62e+01 1sa3A 262 6.73e+01 c.52.1.23 105400 1q8iA 783 6.85e+01 c.55.3.5,e.8.1.1 96208,96209 1cjxA 357 6.86e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1h9mA 145 6.87e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1z2iA 358 7.13e+01 2culA 232 7.15e+01 2ew2A 316 7.22e+01 1y0yA 353 7.25e+01 2bjrA 368 7.44e+01 2gibA 103 7.44e+01 1bywA 110 7.52e+01 1bywA d.110.3.6 40912 1s1fA 406 7.52e+01 1nuyA 337 7.54e+01 e.7.1.1 86213 2f6uA 234 7.55e+01 1chuA 540 7.65e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 2a2cA 478 7.66e+01 1ve6A 582 7.67e+01 2b8wA 328 7.73e+01 1zm7A 230 7.82e+01 1zsyA 357 7.85e+01 2gokA 429 7.86e+01 2ck3A 510 7.88e+01 1vjuA 309 7.91e+01 d.248.1.1 100835 2gukA 120 7.94e+01 1aquA 297 7.98e+01 1aquA c.37.1.5 31942 1lbvA 252 7.99e+01 e.7.1.1 73813 1wnyA 186 8.09e+01 1wj9A 211 8.19e+01 1t6gC 184 8.39e+01 b.29.1.11 106569 1pl8A 356 8.40e+01 b.35.1.2,c.2.1.1 94878,94879 1yovA 537 8.40e+01 1hr0W 71 8.52e+01 1ah9 b.40.4.5 25329 1qg3A 195 8.53e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 2fcjA 119 8.58e+01 1cruA 454 8.76e+01 1c9uA b.68.2.1 27617 1q0qA 406 8.79e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1obfO 335 8.85e+01 c.2.1.3,d.81.1.1 86768,86769 1b5qA 472 8.87e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1g8kB 133 8.89e+01 1g8jB b.33.1.1 24435 2aq9A 262 8.97e+01